RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	TRAV23DV6	A0A075B6W5	121 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	TRAV10	A0A0B4J240	114 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	hADV29S1	A0JD25	119 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	CCK	P06307	115 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	NHLRC4	P0CG21	123 aa	Predicted RBP	4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	DNAH10OS	P0CZ25	163 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	RPL18A	Q02543	176 aa	Known RBP	4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	ESRG	Q1W209	222 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	C15orf56	Q8N910	161 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	DIRC1	Q969H9	104 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	C1orf43	Q9BWL3	253 aa		4.17	□□□□□ -1.74
CLN3-223	ENST00000566472	NDUFC2-KCTD14	E9PQ53	114 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472		M0R378	163 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	SLPI	P03973	132 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	VPREB1	P12018	145 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	C9orf129	Q5T035	196 aa	Known RBP	4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	ATP5EP2	Q5VTU8	51 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	4.16	□□□□□ -1.74
CLN3-223	ENST00000566472		Q6ZRU5	148 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	JMJD1C	Q15652	2540 aa		4.16	□□□□□ -1.74
CLN3-223	ENST00000566472	HELZ2	Q9BYK8	2649 aa	Known RBP	4.15	□□□□□ -1.74
CLN3-223	ENST00000566472	LOC110117498	A0A087WWA1	95 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	TRBV10-3	A0A0K0K1G6	114 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	PDE6G	P18545	87 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	COX7B	P24311	80 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	ELOF1	P60002	83 aa	Known RBP	4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	HIGD2B	Q4VC39	106 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	RMI2	Q96E14	147 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	LINC00526	Q96FQ7	95 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	TM2D3	Q9BRN9	247 aa		4.15	□□□□□ -1.75
CLN3-223	ENST00000566472	IGKV2D-24	A0A075B6R9	120 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	FAM236A	A0A1B0GUQ0	79 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	FAM236B	A0A1B0GV22	79 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	ZNF73	O43830	326 aa	Predicted RBP	4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	TLX1NB	P0CAT3	122 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	SYCN	Q0VAF6	134 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	LINC00846	Q9NV44	126 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	PLA2G2D	Q9UNK4	145 aa		4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	MAP1A	P78559	2803 aa	Predicted RBP	4.14	□□□□□ -1.75
CLN3-223	ENST00000566472	HIST1H4A	P62805	103 aa	Known RBP	4.13	□□□□□ -1.75
CLN3-223	ENST00000566472	RBM3	P98179	157 aa	Known RBP	4.13	□□□□□ -1.75
CLN3-223	ENST00000566472	UPK3B	Q9BT76	320 aa		4.13	□□□□□ -1.75
CLN3-223	ENST00000566472	XAGE1A	Q9HD64	81 aa		4.13	□□□□□ -1.75
CLN3-223	ENST00000566472	ITPR2	Q14571	2701 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	NOTCH2	Q04721	2471 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	IGLV5-37	A0A075B6J1	123 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	ATOX1	O00244	68 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472		Q6ZQT0	140 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472		Q6ZQY7	126 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	MRAP	Q8TCY5	172 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	UBL5	Q9BZL1	73 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	NSD1	Q96L73	2696 aa	Predicted RBP	4.12	□□□□□ -1.75
CLN3-223	ENST00000566472	CUBN	O60494	3623 aa		4.12	□□□□□ -1.75
CLN3-223	ENST00000566472		K7EIL1	84 aa		4.11	□□□□□ -1.75
CLN3-223	ENST00000566472		Q6ZRP5	223 aa		4.11	□□□□□ -1.75
CLN3-223	ENST00000566472	LINC00528	Q8N1L1	170 aa		4.11	□□□□□ -1.75
CLN3-223	ENST00000566472	LAMTOR3	Q9UHA4	124 aa		4.11	□□□□□ -1.75
CLN3-223	ENST00000566472	LINC00588	Q9Y4M8	146 aa		4.11	□□□□□ -1.75
CLN3-223	ENST00000566472	CCDC179	H3BU77	68 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	PRY	O14603	147 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	UQCRQ	O14949	82 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	NKAPP1	Q8N9T2	125 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	DSCR8	Q96T75	97 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	KCNQ1DN	Q9H478	68 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	OTOG	Q6ZRI0	2925 aa		4.1	□□□□□ -1.75
CLN3-223	ENST00000566472	IGKV3D-7	A0A0C4DH55	119 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	TRBV7-4	A0A0J9YYF1	115 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	USP17L23	D6RBM5	183 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	COX7C	P15954	63 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	C3orf22	Q8N5N4	141 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	SETD2	Q9BYW2	2564 aa	Predicted RBP	4.09	□□□□□ -1.75
CLN3-223	ENST00000566472	HECTD1	Q9ULT8	2610 aa		4.09	□□□□□ -1.75
CLN3-223	ENST00000566472		B5MCH6	92 aa		4.08	□□□□□ -1.76
CLN3-223	ENST00000566472	BCE1	O60756	84 aa		4.08	□□□□□ -1.76
CLN3-223	ENST00000566472	NF1	P21359	2839 aa		4.08	□□□□□ -1.76
CLN3-223	ENST00000566472	C7orf33	Q8WU49	177 aa		4.08	□□□□□ -1.76
CLN3-223	ENST00000566472	LOC107984640	A0A0U1RRK4	108 aa		4.07	□□□□□ -1.76
CLN3-223	ENST00000566472	SPRR1A	P35321	89 aa		4.07	□□□□□ -1.76
CLN3-223	ENST00000566472	SERTAD4-AS1	Q5TG53	156 aa		4.07	□□□□□ -1.76
CLN3-223	ENST00000566472	DHRS4-AS1	Q9P1J3	65 aa		4.07	□□□□□ -1.76
CLN3-223	ENST00000566472	HIVEP1	P15822	2718 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472		A0A1B0GW54	56 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	CRYGA	P11844	174 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	CXCL6	P80162	114 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	C9orf153	Q5TBE3	101 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472		Q6ZVQ6	151 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	SERP2	Q8N6R1	65 aa		4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	GCN1	Q92616	2671 aa	Known RBP	4.06	□□□□□ -1.76
CLN3-223	ENST00000566472	IGLV1-50	A0A075B6I6	118 aa		4.05	□□□□□ -1.76
CLN3-223	ENST00000566472	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	4.05	□□□□□ -1.76
CLN3-223	ENST00000566472		Q6ZRX8	168 aa		4.05	□□□□□ -1.76
CLN3-223	ENST00000566472	PKIG	Q9Y2B9	76 aa		4.05	□□□□□ -1.76
CLN3-223	ENST00000566472		A0A087WVE0	104 aa		4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	ETDC	A0A1B0GVM5	59 aa		4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	LINC01547	P58512	204 aa	Predicted RBP	4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	CNBP	P62633	177 aa	Known RBP	4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	C14orf177	Q52M58	125 aa		4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	CASC10	Q5T4H9	136 aa		4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	SMIM20	Q8N5G0	67 aa		4.04	□□□□□ -1.76
CLN3-223	ENST00000566472	SS18L2	Q9UHA2	77 aa		4.04	□□□□□ -1.76

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