RNA–Protein interactions for RNA: ENST00000564091.6

CLN3-211, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 790 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-211ENST00000564091 C11orf86A6NJI1 115 aa9.62□□□□□ -0.87
CLN3-211ENST00000564091 PMCHL1Q16048 86 aa9.62□□□□□ -0.87
CLN3-211ENST00000564091 COX19Q49B96 90 aa9.62□□□□□ -0.87
CLN3-211ENST00000564091 SPRR4Q96PI1 79 aa9.62□□□□□ -0.87
CLN3-211ENST00000564091 TMEM170BQ5T4T1 132 aa9.61□□□□□ -0.87
CLN3-211ENST00000564091 BAGE3Q86Y29 109 aa9.61□□□□□ -0.87
CLN3-211ENST00000564091 A0A0U1RRA0 63 aa9.6□□□□□ -0.87
CLN3-211ENST00000564091 LINC00614P0C842 121 aa9.6□□□□□ -0.87
CLN3-211ENST00000564091 LINC00158P58513 81 aa9.6□□□□□ -0.87
CLN3-211ENST00000564091 SPAG11AQ6PDA7 123 aa9.6□□□□□ -0.87
CLN3-211ENST00000564091 SEC11CQ9BY50 192 aa9.6□□□□□ -0.87
CLN3-211ENST00000564091 KRTAP9-6A0A140TA67 174 aa9.59□□□□□ -0.87
CLN3-211ENST00000564091 HBDP02042 147 aa9.59□□□□□ -0.87
CLN3-211ENST00000564091 DAND5Q8N907 189 aa9.58□□□□□ -0.88
CLN3-211ENST00000564091 C18orf32Q8TCD1 76 aa9.58□□□□□ -0.88
CLN3-211ENST00000564091 C4orf48Q5BLP8 95 aa9.57□□□□□ -0.88
CLN3-211ENST00000564091 SFTA2Q6UW10 78 aa9.57□□□□□ -0.88
CLN3-211ENST00000564091 Q8NBF4 154 aa9.56□□□□□ -0.88
CLN3-211ENST00000564091 FP248Q71RG6 208 aaPredicted RBP9.55□□□□□ -0.88
CLN3-211ENST00000564091 LINC00337Q8N6G1 96 aa9.55□□□□□ -0.88
CLN3-211ENST00000564091 RPS10P5Q9NQ39 176 aa9.55□□□□□ -0.88
CLN3-211ENST00000564091 CHTOPQ9Y3Y2 248 aaKnown RBP9.55□□□□□ -0.88
CLN3-211ENST00000564091 TRAPPC1Q9Y5R8 145 aa9.55□□□□□ -0.88
CLN3-211ENST00000564091 ZNF706Q9Y5V0 76 aaPredicted RBP9.55□□□□□ -0.88
CLN3-211ENST00000564091 KRTAP13-3Q3SY46 172 aa9.54□□□□□ -0.88
CLN3-211ENST00000564091 SMIM13P0DJ93 91 aa9.53□□□□□ -0.88
CLN3-211ENST00000564091 IFITM2Q01629 132 aa9.53□□□□□ -0.88
CLN3-211ENST00000564091 BOD1L2Q8IYS8 172 aa9.53□□□□□ -0.88
CLN3-211ENST00000564091 SMCR5Q8TEV8 140 aa9.53□□□□□ -0.88
CLN3-211ENST00000564091 TMEM223A0PJW6 202 aa9.52□□□□□ -0.89
CLN3-211ENST00000564091 PRYO14603 147 aa9.52□□□□□ -0.89
CLN3-211ENST00000564091 NCR3O14931 201 aa9.52□□□□□ -0.89
CLN3-211ENST00000564091 ATP6V1G1O75348 118 aa9.51□□□□□ -0.89
CLN3-211ENST00000564091 RHEBQ15382 184 aa9.51□□□□□ -0.89
CLN3-211ENST00000564091 COMMD7Q86VX2 200 aa9.51□□□□□ -0.89
CLN3-211ENST00000564091 SPRR1AP35321 89 aa9.5□□□□□ -0.89
CLN3-211ENST00000564091 C10orf91Q5T1B1 145 aa9.5□□□□□ -0.89
CLN3-211ENST00000564091 MIR7-3HGQ8N6C7 128 aa9.5□□□□□ -0.89
CLN3-211ENST00000564091 KCNQ1DNQ9H478 68 aa9.5□□□□□ -0.89
CLN3-211ENST00000564091 ASB16-AS1Q495Z4 193 aa9.49□□□□□ -0.89
CLN3-211ENST00000564091 MEIG1Q5JSS6 88 aa9.49□□□□□ -0.89
CLN3-211ENST00000564091 KRTAP4-1Q9BYQ7 146 aa9.49□□□□□ -0.89
CLN3-211ENST00000564091 ETDCA0A1B0GVM5 59 aa9.48□□□□□ -0.89
CLN3-211ENST00000564091 KRTAP4-16G5E9R7 235 aaPredicted RBP9.48□□□□□ -0.89
CLN3-211ENST00000564091 SPINK1P00995 79 aa9.48□□□□□ -0.89
CLN3-211ENST00000564091 TRBV10-3A0A0K0K1G6 114 aa9.47□□□□□ -0.89
CLN3-211ENST00000564091 GAGE2AQ6NT46 116 aa9.47□□□□□ -0.89
CLN3-211ENST00000564091 TRAV12-1A0A0B4J245 112 aa9.46□□□□□ -0.9
CLN3-211ENST00000564091 LINC00483Q53H64 154 aa9.46□□□□□ -0.9
CLN3-211ENST00000564091 FSIP2Q5CZC0 6907 aa9.46□□□□□ -0.9
CLN3-211ENST00000564091 ERC2-IT1O76042 136 aa9.45□□□□□ -0.9
CLN3-211ENST00000564091 IFI27L1Q96BM0 104 aa9.45□□□□□ -0.9
CLN3-211ENST00000564091 IGLV9-49A0A0B4J1Y8 123 aa9.44□□□□□ -0.9
CLN3-211ENST00000564091 LINC01547P58512 204 aaPredicted RBP9.44□□□□□ -0.9
CLN3-211ENST00000564091 MOBPQ13875 183 aa9.44□□□□□ -0.9
CLN3-211ENST00000564091 HERV-K104P63124 156 aa9.43□□□□□ -0.9
CLN3-211ENST00000564091 NDUFA12Q9UI09 145 aa9.43□□□□□ -0.9
CLN3-211ENST00000564091 B5MCH6 92 aa9.42□□□□□ -0.9
CLN3-211ENST00000564091 SEC61BP60468 96 aaKnown RBP9.42□□□□□ -0.9
CLN3-211ENST00000564091 LINC00587B1AMM8 73 aa9.4□□□□□ -0.9
CLN3-211ENST00000564091 Q8N377 158 aa9.4□□□□□ -0.9
CLN3-211ENST00000564091 CHCHD1Q96BP2 118 aaKnown RBP9.4□□□□□ -0.9
CLN3-211ENST00000564091 MYMXA0A1B0GTQ4 84 aa9.39□□□□□ -0.91
CLN3-211ENST00000564091 S100A12P80511 92 aa9.39□□□□□ -0.91
CLN3-211ENST00000564091 SSBP3-AS1Q7Z2R9 100 aa9.39□□□□□ -0.91
CLN3-211ENST00000564091 Q9BRP9 147 aa9.39□□□□□ -0.91
CLN3-211ENST00000564091 MAP1LC3CQ9BXW4 147 aa9.39□□□□□ -0.91
CLN3-211ENST00000564091 APOC3P02656 99 aa9.38□□□□□ -0.91
CLN3-211ENST00000564091 DDTP30046 118 aa9.38□□□□□ -0.91
CLN3-211ENST00000564091 TSPEAR-AS2P59090 65 aa9.38□□□□□ -0.91
CLN3-211ENST00000564091 H0Y8G0 127 aa9.37□□□□□ -0.91
CLN3-211ENST00000564091 RPS29P62273 56 aaKnown RBP9.37□□□□□ -0.91
CLN3-211ENST00000564091 FAM19A2Q8N3H0 131 aa9.37□□□□□ -0.91
CLN3-211ENST00000564091 SLC25A20O43772 301 aa9.36□□□□□ -0.91
CLN3-211ENST00000564091 LOC107984156A0A0G2JMH3 177 aa9.35□□□□□ -0.91
CLN3-211ENST00000564091 ARL17AQ8IVW1 177 aa9.35□□□□□ -0.91
CLN3-211ENST00000564091 TRBV10-2A0A0K0K1G8 114 aa9.34□□□□□ -0.91
CLN3-211ENST00000564091 LCE2DQ5TA82 110 aaPredicted RBP9.34□□□□□ -0.91
CLN3-211ENST00000564091 Q6ZRX8 168 aa9.34□□□□□ -0.91
CLN3-211ENST00000564091 LEPROTO15243 131 aa9.33□□□□□ -0.92
CLN3-211ENST00000564091 HSBP1O75506 76 aa9.33□□□□□ -0.92
CLN3-211ENST00000564091 XP32Q5T750 250 aa9.33□□□□□ -0.92
CLN3-211ENST00000564091 YPEL4Q96NS1 127 aa9.33□□□□□ -0.92
CLN3-211ENST00000564091 SNAPINO95295 136 aa9.32□□□□□ -0.92
CLN3-211ENST00000564091 C9orf153Q5TBE3 101 aa9.32□□□□□ -0.92
CLN3-211ENST00000564091 SPANXB1Q9NS25 103 aaPredicted RBP9.32□□□□□ -0.92
CLN3-211ENST00000564091 SVBPQ8N300 66 aa9.31□□□□□ -0.92
CLN3-211ENST00000564091 IGLV6-57P01721 117 aa9.3□□□□□ -0.92
CLN3-211ENST00000564091 S100A7L2Q5SY68 101 aa9.3□□□□□ -0.92
CLN3-211ENST00000564091 ST20-AS1Q8NBB2 130 aa9.3□□□□□ -0.92
CLN3-211ENST00000564091 J3QQQ9 107 aa9.29□□□□□ -0.92
CLN3-211ENST00000564091 MIEN1Q9BRT3 115 aa9.29□□□□□ -0.92
CLN3-211ENST00000564091 TRAV23DV6A0A075B6W5 121 aa9.28□□□□□ -0.92
CLN3-211ENST00000564091 NDUFA5Q16718 116 aa9.28□□□□□ -0.92
CLN3-211ENST00000564091 LCE2CQ5TA81 110 aa9.28□□□□□ -0.92
CLN3-211ENST00000564091 PMCHL2Q9BQD1 86 aa9.28□□□□□ -0.92
CLN3-211ENST00000564091 EIF4EBP3O60516 100 aaPredicted RBP9.27□□□□□ -0.93
CLN3-211ENST00000564091 LEPROTL1O95214 131 aa9.27□□□□□ -0.93
CLN3-211ENST00000564091 NDUFC2O95298 119 aa9.27□□□□□ -0.93
CLN3-211ENST00000564091 NPC2P61916 151 aa9.27□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 44.8 ms