RNA–Protein interactions for RNA: ENST00000563343.5

HERPUD1-206, Transcript of homocysteine inducible ER protein with ubiquitin like domain 1, humanhuman

TSL 4

Gene HERPUD1, Length 567 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HERPUD1-206ENST00000563343 Q6ZN92 141 aa4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 FAM19A1Q7Z5A9 133 aa4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 C20orf78Q9BR46 151 aa4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 TMEM126AQ9H061 195 aa4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 PYGO1Q9Y3Y4 419 aa4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 SYNE2Q8WXH0 6885 aaKnown RBP4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 MACF1Q9UPN3 7388 aaKnown RBP4.17□□□□□ -1.74
HERPUD1-206ENST00000563343 HIGD1CA8MV81 97 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 TMEM250H0YL14 139 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 M0R378 163 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 RPS29P62273 56 aaKnown RBP4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 MRPL51Q4U2R6 128 aaKnown RBP4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 C6orf226Q5I0X4 101 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 BORCS7Q96B45 105 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 ALKBH7Q9BT30 221 aaPredicted RBP4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 SMIM2Q9BVW6 85 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 GNB1LQ9BYB4 327 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 KRTAP9-8Q9BYQ0 159 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 NDUFA12Q9UI09 145 aa4.16□□□□□ -1.74
HERPUD1-206ENST00000563343 TCAPO15273 167 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 FABP9Q0Z7S8 132 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 ZC2HC1BQ5TFG8 222 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 FAM19A3Q7Z5A8 133 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 FAM19A2Q8N3H0 131 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 NKAPP1Q8N9T2 125 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 TMEM141Q96I45 108 aa4.15□□□□□ -1.75
HERPUD1-206ENST00000563343 SRP19P09132 144 aaKnown RBP4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 IFI27P40305 119 aaPredicted RBP4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 SNRPEP62304 92 aaKnown RBP4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 FAM104BQ5XKR9 115 aa4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 YPEL4Q96NS1 127 aa4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 AMELXQ99217 191 aa4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 HIGD2AQ9BW72 106 aa4.14□□□□□ -1.75
HERPUD1-206ENST00000563343 TRAV9-1A0A075B6T8 112 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 PCP4L1A6NKN8 68 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 TSTD3H0UI37 97 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 VPREB1P12018 145 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 CXCL5P42830 114 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 NAT8Q9UHE5 227 aa4.13□□□□□ -1.75
HERPUD1-206ENST00000563343 C9JQL5 133 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 SLC25A20O43772 301 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 NPYP01303 97 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 RIGQ13278 110 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 COA6Q5JTJ3 125 aaKnown RBP4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 C2orf66Q6UXQ4 117 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 TEX43Q6ZNM6 134 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 Q8NDZ9 215 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 CDKN2A-AS1Q9UH64 79 aa4.12□□□□□ -1.75
HERPUD1-206ENST00000563343 CFC1P0CG37 223 aa4.11□□□□□ -1.75
HERPUD1-206ENST00000563343 CKS2P33552 79 aa4.11□□□□□ -1.75
HERPUD1-206ENST00000563343 COX19Q49B96 90 aa4.11□□□□□ -1.75
HERPUD1-206ENST00000563343 LINC00483Q53H64 154 aa4.11□□□□□ -1.75
HERPUD1-206ENST00000563343 COX6B2Q6YFQ2 88 aa4.11□□□□□ -1.75
HERPUD1-206ENST00000563343 SMIM1B2RUZ4 78 aa4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 SMIM7Q9BQ49 75 aa4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 C2orf88Q9BSF0 95 aa4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 OSTCQ9NRP0 149 aa4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 ZNF706Q9Y5V0 76 aaPredicted RBP4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 V9GYV3 84 aa4.1□□□□□ -1.75
HERPUD1-206ENST00000563343 D6R8Y8 96 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BKO60814 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BJP06899 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BOP23527 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BBP33778 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BDP58876 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BCP62807 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST2H2BEQ16778 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST2H2BFQ5QNW6 126 aaPredicted RBP4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 LINC01551Q86U37 167 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST3H2BBQ8N257 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BHQ93079 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BNQ99877 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 HIST1H2BMQ99879 126 aa4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 GEMIN7Q9H840 131 aaKnown RBP4.09□□□□□ -1.75
HERPUD1-206ENST00000563343 IGIPA6NJ69 53 aa4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 HERVK_113P63121 156 aa4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 MOBPQ13875 183 aa4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 JOSD1Q15040 202 aaPredicted RBP4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 SSBP3-AS1Q7Z2R9 100 aa4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 COX7B2Q8TF08 81 aa4.08□□□□□ -1.76
HERPUD1-206ENST00000563343 C9orf92A6NGG3 77 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 LINC00587B1AMM8 73 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 CEBPGP53567 150 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 NDUFA6P56556 154 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 ADIRFQ15847 76 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 KRTAP6-3Q3LI67 103 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 PYY3Q5JQD4 70 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 SMCR5Q8TEV8 140 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 VCX2Q9H322 139 aa4.07□□□□□ -1.76
HERPUD1-206ENST00000563343 TRGC2P03986 189 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 DDTP30046 118 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 RPL23P62829 140 aaKnown RBP4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 SEC11AP67812 179 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 PDZD11Q5EBL8 140 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 HIST1H2BLQ99880 126 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 SND1-IT1Q9HBX3 110 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 NAT8BQ9UHF3 227 aa4.06□□□□□ -1.76
HERPUD1-206ENST00000563343 IGLV5-45A0A087WSX0 123 aa4.05□□□□□ -1.76
HERPUD1-206ENST00000563343 IGLV9-49A0A0B4J1Y8 123 aa4.05□□□□□ -1.76
HERPUD1-206ENST00000563343 A0A1B0GXF2 115 aa4.05□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 89 ms