RNA–Protein interactions for RNA: ENST00000561818.1

VPS39-204, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 537 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-204ENST00000561818 LINC00588Q9Y4M8 146 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 NOTCH1P46531 2555 aa5.05□□□□□ -1.6
VPS39-204ENST00000561818 NBEAL1Q6ZS30 2694 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 C9JAW5 83 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 INAFM2P0DMQ5 153 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 SYCNQ0VAF6 134 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 OR13C6PQ8NH95 151 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 PRO0461Q9UI25 63 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 PKD1L1Q8TDX9 2849 aa5.04□□□□□ -1.6
VPS39-204ENST00000561818 KRTAP26-1Q6PEX3 210 aa5.03□□□□□ -1.6
VPS39-204ENST00000561818 C2orf82Q6UX34 121 aa5.03□□□□□ -1.6
VPS39-204ENST00000561818 PLA2G2DQ9UNK4 145 aa5.03□□□□□ -1.6
VPS39-204ENST00000561818 IGKV2-28A0A075B6P5 120 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 FAM240AA0A1B0GVK7 77 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 IGKV2D-28P01615 120 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 ACYP1P07311 99 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 UNQ6190/PRO20217Q6UXQ8 127 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 LINC00337Q8N6G1 96 aa5.02□□□□□ -1.61
VPS39-204ENST00000561818 M0R378 163 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 PSCAO43653 123 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 EIF4EBP3O60516 100 aaPredicted RBP5.01□□□□□ -1.61
VPS39-204ENST00000561818 PRB2P02812 416 aaPredicted RBP5.01□□□□□ -1.61
VPS39-204ENST00000561818 WFDC2Q14508 124 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 ETDBQ3ZM63 59 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 C15orf56Q8N910 161 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 SMIM11BQ8TCY0 68 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 VPS25Q9BRG1 176 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 C6orf48Q9UBA6 75 aa5.01□□□□□ -1.61
VPS39-204ENST00000561818 JMJD7-PLA2G4BH0Y9G9 81 aa5□□□□□ -1.61
VPS39-204ENST00000561818 TMEM256-PLSCR3K7ERE1 68 aa5□□□□□ -1.61
VPS39-204ENST00000561818 IGLV6-57P01721 117 aa5□□□□□ -1.61
VPS39-204ENST00000561818 Q8N3U1 123 aa5□□□□□ -1.61
VPS39-204ENST00000561818 DIRC1Q969H9 104 aa5□□□□□ -1.61
VPS39-204ENST00000561818 Q9HAA7 133 aa5□□□□□ -1.61
VPS39-204ENST00000561818 ORMDL1Q9P0S3 153 aa5□□□□□ -1.61
VPS39-204ENST00000561818 LINC00474Q9P2X8 69 aa5□□□□□ -1.61
VPS39-204ENST00000561818 APLNQ9ULZ1 77 aa5□□□□□ -1.61
VPS39-204ENST00000561818 CMYA5Q8N3K9 4069 aa5□□□□□ -1.61
VPS39-204ENST00000561818 LOC107984640A0A0U1RRK4 108 aa4.99□□□□□ -1.61
VPS39-204ENST00000561818 CNBPP62633 177 aaKnown RBP4.99□□□□□ -1.61
VPS39-204ENST00000561818 NKAPP1Q8N9T2 125 aa4.99□□□□□ -1.61
VPS39-204ENST00000561818 IGLV5-37A0A075B6J1 123 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 TRAV23DV6A0A075B6W5 121 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 USP17L23D6RBM5 183 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 PDE6GP18545 87 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 HIGD2BQ4VC39 106 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 Q6ZRU5 148 aa4.98□□□□□ -1.61
VPS39-204ENST00000561818 C6orf223Q8N319 242 aa4.97□□□□□ -1.61
VPS39-204ENST00000561818 CLEC2BQ92478 149 aa4.97□□□□□ -1.61
VPS39-204ENST00000561818 LINC00167Q96N53 147 aa4.97□□□□□ -1.61
VPS39-204ENST00000561818 BAALC-AS2P0C853 105 aa4.96□□□□□ -1.62
VPS39-204ENST00000561818 VPREB1P12018 145 aa4.96□□□□□ -1.62
VPS39-204ENST00000561818 PCP4P48539 62 aa4.96□□□□□ -1.62
VPS39-204ENST00000561818 C10orf25Q5T742 122 aa4.96□□□□□ -1.62
VPS39-204ENST00000561818 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP4.96□□□□□ -1.62
VPS39-204ENST00000561818 NBDYA0A0U1RRE5 68 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 hADV29S1A0JD25 119 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 PRYO14603 147 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 ZNF73O43830 326 aaPredicted RBP4.95□□□□□ -1.62
VPS39-204ENST00000561818 SCGB1A1P11684 91 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 RPL18AQ02543 176 aaKnown RBP4.95□□□□□ -1.62
VPS39-204ENST00000561818 C6orf99Q4VX62 202 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 C9orf116Q5BN46 136 aaPredicted RBP4.95□□□□□ -1.62
VPS39-204ENST00000561818 Q8N814 137 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 TENM3Q9P273 2699 aa4.95□□□□□ -1.62
VPS39-204ENST00000561818 STAB2Q8WWQ8 2551 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 NCR3O14931 201 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 LECT2O14960 151 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 COX7BP24311 80 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 ELOF1P60002 83 aaKnown RBP4.94□□□□□ -1.62
VPS39-204ENST00000561818 LINC00575Q6W349 94 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 DHRS4-AS1Q9P1J3 65 aa4.94□□□□□ -1.62
VPS39-204ENST00000561818 C16orf90A8MZG2 172 aa4.93□□□□□ -1.62
VPS39-204ENST00000561818 Q6ZRP5 223 aa4.93□□□□□ -1.62
VPS39-204ENST00000561818 SIGMAR1Q99720 223 aa4.93□□□□□ -1.62
VPS39-204ENST00000561818 KCNQ1DNQ9H478 68 aa4.93□□□□□ -1.62
VPS39-204ENST00000561818 TRBV10-3A0A0K0K1G6 114 aa4.92□□□□□ -1.62
VPS39-204ENST00000561818 GAGE2EQ4V326 116 aa4.92□□□□□ -1.62
VPS39-204ENST00000561818 MTURNQ8N3F0 131 aa4.92□□□□□ -1.62
VPS39-204ENST00000561818 XAGE1AQ9HD64 81 aa4.92□□□□□ -1.62
VPS39-204ENST00000561818 GAGE2DQ9UEU5 116 aa4.92□□□□□ -1.62
VPS39-204ENST00000561818 A0A087WYN8 130 aa4.91□□□□□ -1.62
VPS39-204ENST00000561818 A0A1B0GW54 56 aa4.91□□□□□ -1.62
VPS39-204ENST00000561818 LINC00526Q96FQ7 95 aa4.91□□□□□ -1.62
VPS39-204ENST00000561818 OBSCN-AS1Q96MR7 158 aa4.91□□□□□ -1.62
VPS39-204ENST00000561818 TEX49A0A1B0GTD5 131 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 C3orf84H3BNL1 204 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 XP32Q5T750 250 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 MRPL55Q7Z7F7 128 aaKnown RBP4.9□□□□□ -1.63
VPS39-204ENST00000561818 FAM218AQ96MZ4 157 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 WWC2-AS2Q96NR7 200 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 IMUPQ9GZP8 106 aa4.9□□□□□ -1.63
VPS39-204ENST00000561818 ETDCA0A1B0GVM5 59 aa4.89□□□□□ -1.63
VPS39-204ENST00000561818 FAM229AH3BQW9 127 aa4.89□□□□□ -1.63
VPS39-204ENST00000561818 ATP5EP2Q5VTU8 51 aa4.89□□□□□ -1.63
VPS39-204ENST00000561818 DSCR8Q96T75 97 aa4.89□□□□□ -1.63
VPS39-204ENST00000561818 HUWE1Q7Z6Z7 4374 aaKnown RBP4.89□□□□□ -1.63
VPS39-204ENST00000561818 LOC110117498A0A087WWA1 95 aa4.88□□□□□ -1.63
VPS39-204ENST00000561818 SPRR1AP35321 89 aa4.88□□□□□ -1.63
VPS39-204ENST00000561818 RBM3P98179 157 aaKnown RBP4.88□□□□□ -1.63
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms