RNA–Protein interactions for RNA: ENST00000560637.5

VPS13C-209, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 1 (best)

Gene VPS13C, Length 3,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-209ENST00000560637 LINC00612Q8N6U2 182 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 AKAP9Q99996 3911 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 TRAV13-2A0A0B4J235 113 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 CSDC2Q9Y534 153 aaKnown RBP3.66□□□□□ -1.82
VPS13C-209ENST00000560637 FBN3Q75N90 2809 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 C6orf99Q4VX62 202 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 Q8IZM0 81 aa3.66□□□□□ -1.82
VPS13C-209ENST00000560637 C16orf90A8MZG2 172 aa3.65□□□□□ -1.82
VPS13C-209ENST00000560637 IBA57-AS1B1ANH7 110 aa3.65□□□□□ -1.82
VPS13C-209ENST00000560637 H3BNG1 76 aa3.65□□□□□ -1.83
VPS13C-209ENST00000560637 M0QXV9 152 aa3.65□□□□□ -1.83
VPS13C-209ENST00000560637 SMR3BP02814 79 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-209ENST00000560637 FLG2Q5D862 2391 aaPredicted RBP3.65□□□□□ -1.83
VPS13C-209ENST00000560637 F8WEM9 126 aa3.65□□□□□ -1.83
VPS13C-209ENST00000560637 SPANXCQ9NY87 97 aa3.65□□□□□ -1.83
VPS13C-209ENST00000560637 LOC107984640A0A0U1RRK4 108 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 WFDC2Q14508 124 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 ATXN8Q156A1 80 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 ETDBQ3ZM63 59 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 C2orf91Q6ZV80 131 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 C6orf48Q9UBA6 75 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 C3orf84H3BNL1 204 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 J3QR89 54 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 IFITM1P13164 125 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 LINC00476Q8WZB0 136 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 DIRC1Q969H9 104 aa3.64□□□□□ -1.83
VPS13C-209ENST00000560637 TRBV10-3A0A0K0K1G6 114 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 FAM168BA1KXE4 195 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 RTL8CO15255 209 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 GAGE2AQ6NT46 116 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 KRTAP1-5Q9BYS1 174 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 NDUFC2-KCTD14E9PQ53 114 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 PRLHP81277 87 aa3.63□□□□□ -1.83
VPS13C-209ENST00000560637 A0A0A0MQY5 61 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 C9orf153Q5TBE3 101 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 HRCT1Q6UXD1 115 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 C7orf33Q8WU49 177 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 C9orf118A6NHY6 69 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 SMCPP49901 116 aaPredicted RBP3.62□□□□□ -1.83
VPS13C-209ENST00000560637 C1orf137Q5JT78 98 aa3.62□□□□□ -1.83
VPS13C-209ENST00000560637 PHF5AQ7RTV0 110 aaKnown RBP3.62□□□□□ -1.83
VPS13C-209ENST00000560637 A0A1W2PPM0 123 aa3.61□□□□□ -1.83
VPS13C-209ENST00000560637 COX7BP24311 80 aa3.61□□□□□ -1.83
VPS13C-209ENST00000560637 TRAV23DV6A0A075B6W5 121 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 Q6ZRP5 223 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 HIGD1BQ9P298 99 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 IGLV9-49A0A0B4J1Y8 123 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 TRIAP1O43715 76 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 BAALC-AS2P0C853 105 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 SMIM11BQ8TCY0 68 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 NTN5Q8WTR8 489 aaPredicted RBP3.6□□□□□ -1.83
VPS13C-209ENST00000560637 A0A087WTM6 91 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 TAX1BP3O14907 124 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 SOSTDC1Q6X4U4 206 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 Q6ZQY7 126 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 C15orf56Q8N910 161 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 C22orf24Q9Y442 160 aa3.6□□□□□ -1.83
VPS13C-209ENST00000560637 COL7A1Q02388 2944 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 IGLV5-39A0A0G2JS06 123 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 TRBV30A0A0K0K1B3 111 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 NPSP0C0P6 89 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 SPANXB1Q9NS25 103 aaPredicted RBP3.59□□□□□ -1.83
VPS13C-209ENST00000560637 PRR34Q9NV39 138 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 DLEU1O43261 78 aa3.59□□□□□ -1.83
VPS13C-209ENST00000560637 A0A087WYN8 130 aa3.59□□□□□ -1.84
VPS13C-209ENST00000560637 M0R378 163 aa3.59□□□□□ -1.84
VPS13C-209ENST00000560637 ZNF73O43830 326 aaPredicted RBP3.59□□□□□ -1.84
VPS13C-209ENST00000560637 XGP55808 180 aa3.59□□□□□ -1.84
VPS13C-209ENST00000560637 LINC00337Q8N6G1 96 aa3.59□□□□□ -1.84
VPS13C-209ENST00000560637 MRPL55Q7Z7F7 128 aaKnown RBP3.58□□□□□ -1.84
VPS13C-209ENST00000560637 TCL1BO95988 128 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 C2orf48Q96LS8 159 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 CBY1Q9Y3M2 126 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 LINC00167Q96N53 147 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 SPANXDQ9BXN6 97 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 ORMDL1Q9P0S3 153 aa3.58□□□□□ -1.84
VPS13C-209ENST00000560637 hADV29S1A0JD25 119 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 LINC01546A6NGU7 62 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 PKIGQ9Y2B9 76 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 MEGF8Q7Z7M0 2845 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 K7ERU9 68 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 PRYO14603 147 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 SPINK6Q6UWN8 80 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 UBE2V1Q13404 147 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 DNHD1Q96M86 4753 aa3.57□□□□□ -1.84
VPS13C-209ENST00000560637 IGLV5-45A0A087WSX0 123 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 B5MCH6 92 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 SCGB1A1P11684 91 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 KIAA0087Q14695 138 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 FAM104AQ969W3 186 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 DSCR8Q96T75 97 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 UPK3BQ9BT76 320 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 TRBV20-1A0A075B6N2 111 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 H0YGX0 51 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 K7EP34 96 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 HIST1H4AP62805 103 aaKnown RBP3.56□□□□□ -1.84
VPS13C-209ENST00000560637 COX17Q14061 63 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 OCIAD2Q56VL3 154 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 C3orf22Q8N5N4 141 aa3.56□□□□□ -1.84
VPS13C-209ENST00000560637 Q8N814 137 aa3.56□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 64.3 ms