RNA–Protein interactions for RNA: ENST00000559873.5

USP3-216, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 5

Gene USP3, Length 584 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-216ENST00000559873 A0A1W2PNN7 141 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 FAM168BA1KXE4 195 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 TMEM238C9JI98 176 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 TIMM17BO60830 172 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 Q5VSD8 79 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 VAMP8Q9BV40 100 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 TP73-AS1Q9UF72 201 aa6.34□□□□□ -1.39
USP3-216ENST00000559873 RPL37AP61513 92 aaKnown RBP6.33□□□□□ -1.4
USP3-216ENST00000559873 UBE2BP63146 152 aa6.33□□□□□ -1.4
USP3-216ENST00000559873 COPS9Q8WXC6 57 aa6.33□□□□□ -1.4
USP3-216ENST00000559873 IGLV5-37A0A075B6J1 123 aa6.32□□□□□ -1.4
USP3-216ENST00000559873 SERTAD4-AS1Q5TG53 156 aa6.32□□□□□ -1.4
USP3-216ENST00000559873 PHF5AQ7RTV0 110 aaKnown RBP6.32□□□□□ -1.4
USP3-216ENST00000559873 MRPL55Q7Z7F7 128 aaKnown RBP6.32□□□□□ -1.4
USP3-216ENST00000559873 Q6ZVH6 145 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 PCP2Q8IVA1 136 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 BOD1L2Q8IYS8 172 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 DAND5Q8N907 189 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 TTTY13Q9BZ97 58 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 C22orf24Q9Y442 160 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 FAT1Q14517 4588 aa6.31□□□□□ -1.4
USP3-216ENST00000559873 VPREB1P12018 145 aa6.3□□□□□ -1.4
USP3-216ENST00000559873 SPATA45Q537H7 98 aa6.3□□□□□ -1.4
USP3-216ENST00000559873 PAM16Q9Y3D7 125 aa6.3□□□□□ -1.4
USP3-216ENST00000559873 LOC107984156A0A0G2JMH3 177 aa6.29□□□□□ -1.4
USP3-216ENST00000559873 PRR3P79522 188 aaKnown RBP6.29□□□□□ -1.4
USP3-216ENST00000559873 S100A12P80511 92 aa6.29□□□□□ -1.4
USP3-216ENST00000559873 PYY3Q5JQD4 70 aa6.29□□□□□ -1.4
USP3-216ENST00000559873 KRTAP7-1Q8IUC3 87 aa6.29□□□□□ -1.4
USP3-216ENST00000559873 ARL17AQ8IVW1 177 aa6.29□□□□□ -1.4
USP3-216ENST00000559873 COX8AP10176 69 aa6.28□□□□□ -1.4
USP3-216ENST00000559873 LITAFQ99732 161 aa6.28□□□□□ -1.4
USP3-216ENST00000559873 SPANXDQ9BXN6 97 aa6.28□□□□□ -1.4
USP3-216ENST00000559873 SPANXB1Q9NS25 103 aaPredicted RBP6.28□□□□□ -1.4
USP3-216ENST00000559873 SPANXCQ9NY87 97 aa6.28□□□□□ -1.4
USP3-216ENST00000559873 GAGE10A6NGK3 116 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 NDUFC2O95298 119 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 IFITM1P13164 125 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 NPC2P61916 151 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 ADAMTSL4-AS1Q5T5F5 129 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 LINC00308Q8TCZ7 52 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 PPDPFQ9H3Y8 114 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 VPS13BQ7Z7G8 4022 aa6.27□□□□□ -1.41
USP3-216ENST00000559873 TRBV10-2A0A0K0K1G8 114 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 M0R378 163 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 DLEU1O43261 78 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 C1orf137Q5JT78 98 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 SLC25A34Q6PIV7 304 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 LINC00167Q96N53 147 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 PSORS1C2Q9UIG4 136 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 CBY1Q9Y3M2 126 aa6.26□□□□□ -1.41
USP3-216ENST00000559873 NCR3O14931 201 aa6.25□□□□□ -1.41
USP3-216ENST00000559873 SRSF9Q13242 221 aaKnown RBP eCLIP6.25□□□□□ -1.41
USP3-216ENST00000559873 IGKV2-28A0A075B6P5 120 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 RPL37AP8A6NKH3 93 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 IGKV2D-28P01615 120 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 SMIM6P0DI80 62 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 S100A7L2Q5SY68 101 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 SOSTDC1Q6X4U4 206 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 LINC00518Q8N0U6 118 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 C14orf144Q96I85 54 aa6.24□□□□□ -1.41
USP3-216ENST00000559873 IGLV1-50A0A075B6I6 118 aa6.23□□□□□ -1.41
USP3-216ENST00000559873 INAFM2P0DMQ5 153 aa6.23□□□□□ -1.41
USP3-216ENST00000559873 Q8NDZ9 215 aa6.23□□□□□ -1.41
USP3-216ENST00000559873 HIGD1BQ9P298 99 aa6.23□□□□□ -1.41
USP3-216ENST00000559873 ABCA13Q86UQ4 5058 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 PRYO14603 147 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 BCE1O60756 84 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 IGLV7-43P04211 117 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 DDTP30046 118 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 KRTAP10-4P60372 401 aaPredicted RBP6.22□□□□□ -1.41
USP3-216ENST00000559873 REG3GQ6UW15 175 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 HIST1H4GQ99525 98 aa6.22□□□□□ -1.41
USP3-216ENST00000559873 TRBV10-3A0A0K0K1G6 114 aa6.21□□□□□ -1.42
USP3-216ENST00000559873 RPL28P46779 137 aaKnown RBP6.21□□□□□ -1.42
USP3-216ENST00000559873 MUSTN1Q8IVN3 82 aa6.21□□□□□ -1.42
USP3-216ENST00000559873 TMEM126AQ9H061 195 aa6.21□□□□□ -1.42
USP3-216ENST00000559873 EIF4EBP3O60516 100 aaPredicted RBP6.2□□□□□ -1.42
USP3-216ENST00000559873 UBE2AP49459 152 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 SPINK6Q6UWN8 80 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 KRTAP11-1Q8IUC1 163 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 OR13C6PQ8NH95 151 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 KRTAP17-1Q9BYP8 105 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 KCNQ1DNQ9H478 68 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 UQCR10Q9UDW1 63 aa6.2□□□□□ -1.42
USP3-216ENST00000559873 TRAV23DV6A0A075B6W5 121 aa6.19□□□□□ -1.42
USP3-216ENST00000559873 IGLV6-57P01721 117 aa6.19□□□□□ -1.42
USP3-216ENST00000559873 FAM19A1Q7Z5A9 133 aa6.19□□□□□ -1.42
USP3-216ENST00000559873 DIRC1Q969H9 104 aa6.19□□□□□ -1.42
USP3-216ENST00000559873 KRTAP4-5Q9BYR2 181 aa6.19□□□□□ -1.42
USP3-216ENST00000559873 SRRM2Q9UQ35 2752 aaKnown RBP6.18□□□□□ -1.42
USP3-216ENST00000559873 TRAV13-2A0A0B4J235 113 aa6.18□□□□□ -1.42
USP3-216ENST00000559873 ETDCA0A1B0GVM5 59 aa6.18□□□□□ -1.42
USP3-216ENST00000559873 ZNF861PO60384 105 aa6.18□□□□□ -1.42
USP3-216ENST00000559873 HNRNPA3P51991 378 aaKnown RBP6.18□□□□□ -1.42
USP3-216ENST00000559873 TAL2Q16559 108 aa6.18□□□□□ -1.42
USP3-216ENST00000559873 LINC00337Q8N6G1 96 aa6.18□□□□□ -1.42
USP3-216ENST00000559873 FLG2Q5D862 2391 aaPredicted RBP6.17□□□□□ -1.42
USP3-216ENST00000559873 TMEM238LA0A1B0GVL6 79 aa6.17□□□□□ -1.42
USP3-216ENST00000559873 A6NDN8 102 aa6.17□□□□□ -1.42
Retrieved 100 of 20,778 RNA–protein pairs in 15.6 ms