RNA–Protein interactions for RNA: ENST00000559834.1

HDDC3-204, Transcript of HD domain containing 3, humanhuman

TSL 2

Gene HDDC3, Length 1,076 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDDC3-204ENST00000559834 TSTD3H0UI37 97 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 FAM229BQ4G0N7 80 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 NKAPP1Q8N9T2 125 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 COX7B2Q8TF08 81 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 KRTAP9-2Q9BYQ4 174 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 ANAPC11Q9NYG5 84 aa5.37□□□□□ -1.55
HDDC3-204ENST00000559834 IGLV5-37A0A075B6J1 123 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 IGKV2D-26A0A0A0MRZ7 120 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 TINCRA0A1B0GVN0 87 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 SMIM1B2RUZ4 78 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 LINC00304Q8N9R0 145 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 CDIP1Q9H305 208 aa5.36□□□□□ -1.55
HDDC3-204ENST00000559834 ATP5LO75964 103 aa5.35□□□□□ -1.55
HDDC3-204ENST00000559834 SCGB1D1O95968 90 aa5.35□□□□□ -1.55
HDDC3-204ENST00000559834 DDTP30046 118 aa5.35□□□□□ -1.55
HDDC3-204ENST00000559834 C18orf32Q8TCD1 76 aa5.35□□□□□ -1.55
HDDC3-204ENST00000559834 IGLV7-46A0A075B6I9 117 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 IGLV5-45A0A087WSX0 123 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 H3BRM9 83 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 KRTAP13-2Q52LG2 175 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 KRTAP13-1Q8IUC0 172 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 CST9LQ9H4G1 147 aa5.34□□□□□ -1.55
HDDC3-204ENST00000559834 TPRXLQ17RH7 258 aa5.33□□□□□ -1.56
HDDC3-204ENST00000559834 LCE2AQ5TA79 106 aaPredicted RBP5.33□□□□□ -1.56
HDDC3-204ENST00000559834 C14orf144Q96I85 54 aa5.33□□□□□ -1.56
HDDC3-204ENST00000559834 RETNLBQ9BQ08 111 aa5.33□□□□□ -1.56
HDDC3-204ENST00000559834 MUC2Q02817 5179 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 IGKV2-28A0A075B6P5 120 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 IGKV2D-28P01615 120 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 SPINK8P0C7L1 97 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 RPL24P83731 157 aaKnown RBP5.32□□□□□ -1.56
HDDC3-204ENST00000559834 PMVKQ15126 192 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 FAM19A1Q7Z5A9 133 aa5.32□□□□□ -1.56
HDDC3-204ENST00000559834 HSBP1O75506 76 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 PFN2P35080 140 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 KRTDAPP60985 99 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 SPAG11AQ6PDA7 123 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 FAM19A2Q8N3H0 131 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 URB1-AS1Q96HZ7 61 aa5.31□□□□□ -1.56
HDDC3-204ENST00000559834 LINC01546A6NGU7 62 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 C3orf79P0CE67 100 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 PRLHP81277 87 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 COX17Q14061 63 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 VAMP8Q9BV40 100 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 TMEM126AQ9H061 195 aa5.3□□□□□ -1.56
HDDC3-204ENST00000559834 VPREB1P12018 145 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 C4orf48Q5BLP8 95 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 FA2HQ7L5A8 372 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 PLEKHB2Q96CS7 222 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 PPDPFQ9H3Y8 114 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 SND1-IT1Q9HBX3 110 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 PAM16Q9Y3D7 125 aa5.29□□□□□ -1.56
HDDC3-204ENST00000559834 TMEM238C9JI98 176 aa5.28□□□□□ -1.56
HDDC3-204ENST00000559834 SFTA2Q6UW10 78 aa5.28□□□□□ -1.56
HDDC3-204ENST00000559834 ERG28Q9UKR5 140 aa5.28□□□□□ -1.56
HDDC3-204ENST00000559834 IGLV5-39A0A0G2JS06 123 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 M0R378 163 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 IGLC3P0DOY3 106 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 PMCHL1Q16048 86 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 SPATA45Q537H7 98 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 LINC00337Q8N6G1 96 aa5.27□□□□□ -1.57
HDDC3-204ENST00000559834 CHCHD1Q96BP2 118 aaKnown RBP5.27□□□□□ -1.57
HDDC3-204ENST00000559834 A0A1B0GV90 55 aa5.26□□□□□ -1.57
HDDC3-204ENST00000559834 FP248Q71RG6 208 aaPredicted RBP5.26□□□□□ -1.57
HDDC3-204ENST00000559834 HIGD2AQ9BW72 106 aa5.26□□□□□ -1.57
HDDC3-204ENST00000559834 ZNF706Q9Y5V0 76 aaPredicted RBP5.26□□□□□ -1.57
HDDC3-204ENST00000559834 KRTAP9-6A0A140TA67 174 aa5.25□□□□□ -1.57
HDDC3-204ENST00000559834 ZNF22P17026 224 aaPredicted RBP5.25□□□□□ -1.57
HDDC3-204ENST00000559834 ATOH7Q8N100 152 aa5.25□□□□□ -1.57
HDDC3-204ENST00000559834 C3orf22Q8N5N4 141 aa5.25□□□□□ -1.57
HDDC3-204ENST00000559834 ZNF625Q96I27 306 aaPredicted RBP5.25□□□□□ -1.57
HDDC3-204ENST00000559834 MIEN1Q9BRT3 115 aa5.25□□□□□ -1.57
HDDC3-204ENST00000559834 SNHG12Q9BXW3 62 aa5.25□□□□□ -1.57
HDDC3-204ENST00000559834 M0R143 59 aa5.24□□□□□ -1.57
HDDC3-204ENST00000559834 LEPROTL1O95214 131 aa5.24□□□□□ -1.57
HDDC3-204ENST00000559834 LINC00614P0C842 121 aa5.24□□□□□ -1.57
HDDC3-204ENST00000559834 LINC00158P58513 81 aa5.24□□□□□ -1.57
HDDC3-204ENST00000559834 SYS1-DBNDD2H3BUS1 97 aa5.23□□□□□ -1.57
HDDC3-204ENST00000559834 TMEM170BQ5T4T1 132 aa5.23□□□□□ -1.57
HDDC3-204ENST00000559834 SPRR4Q96PI1 79 aa5.23□□□□□ -1.57
HDDC3-204ENST00000559834 UQCR10Q9UDW1 63 aa5.23□□□□□ -1.57
HDDC3-204ENST00000559834 C20orf202A1L168 122 aa5.22□□□□□ -1.57
HDDC3-204ENST00000559834 SPINK1P00995 79 aa5.22□□□□□ -1.57
HDDC3-204ENST00000559834 HSPB8Q9UJY1 196 aa5.22□□□□□ -1.57
HDDC3-204ENST00000559834 A0A096LNJ9 63 aa5.21□□□□□ -1.58
HDDC3-204ENST00000559834 HBDP02042 147 aa5.21□□□□□ -1.58
HDDC3-204ENST00000559834 LINC01547P58512 204 aaPredicted RBP5.21□□□□□ -1.58
HDDC3-204ENST00000559834 PET117Q6UWS5 81 aa5.21□□□□□ -1.58
HDDC3-204ENST00000559834 Q8NDZ9 215 aa5.21□□□□□ -1.58
HDDC3-204ENST00000559834 MAP1LC3CQ9BXW4 147 aa5.21□□□□□ -1.58
HDDC3-204ENST00000559834 C11orf86A6NJI1 115 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 H0Y8G0 127 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 SEC61BP60468 96 aaKnown RBP5.2□□□□□ -1.58
HDDC3-204ENST00000559834 BATFQ16520 125 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 ASB16-AS1Q495Z4 193 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 Q8NBF4 154 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 SMCR5Q8TEV8 140 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 NDUFA12Q9UI09 145 aa5.2□□□□□ -1.58
HDDC3-204ENST00000559834 A0A0U1RRA0 63 aa5.19□□□□□ -1.58
HDDC3-204ENST00000559834 PRYO14603 147 aa5.19□□□□□ -1.58
Retrieved 100 of 20,778 RNA–protein pairs in 14.7 ms