RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 C9orf129Q5T035 196 aaKnown RBP5.85□□□□□ -1.47
LDLR-210ENST00000559340 SLC25A34Q6PIV7 304 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 SCXQ7RTU7 201 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 BOD1L2Q8IYS8 172 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 NKAPP1Q8N9T2 125 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 C7orf33Q8WU49 177 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 TTTY13Q9BZ97 58 aa5.85□□□□□ -1.47
LDLR-210ENST00000559340 LOC107984156A0A0G2JMH3 177 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 EPM2AB3EWF7 344 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 PANO1I0J062 215 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 IFITM1P13164 125 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 SRSF9Q13242 221 aaKnown RBP eCLIP5.84□□□□□ -1.47
LDLR-210ENST00000559340 ARL17AQ8IVW1 177 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 TP73-AS1Q9UF72 201 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 DNAH8Q96JB1 4490 aa5.84□□□□□ -1.47
LDLR-210ENST00000559340 LRP1BQ9NZR2 4599 aa5.84□□□□□ -1.48
LDLR-210ENST00000559340 IGLV5-37A0A075B6J1 123 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 LOC105371267A0A1B0GV96 52 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 A0A1W2PNN7 141 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 FAM19A5Q7Z5A7 132 aaPredicted RBP5.83□□□□□ -1.48
LDLR-210ENST00000559340 C14orf144Q96I85 54 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 SPANXDQ9BXN6 97 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 KRTAP4-5Q9BYR2 181 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 PPDPFQ9H3Y8 114 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 SPANXCQ9NY87 97 aa5.83□□□□□ -1.48
LDLR-210ENST00000559340 FAM229AH3BQW9 127 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 M0QXV9 152 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 ADAMTSL4-AS1Q5T5F5 129 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 DAND5Q8N907 189 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 LINC00308Q8TCZ7 52 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 SPANXB1Q9NS25 103 aaPredicted RBP5.82□□□□□ -1.48
LDLR-210ENST00000559340 HIGD1BQ9P298 99 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 C22orf24Q9Y442 160 aa5.82□□□□□ -1.48
LDLR-210ENST00000559340 FAM168BA1KXE4 195 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 M0R378 163 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 NDUFC2O95298 119 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 UBE2BP63146 152 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 MRPL55Q7Z7F7 128 aaKnown RBP5.81□□□□□ -1.48
LDLR-210ENST00000559340 LINC00518Q8N0U6 118 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 LITAFQ99732 161 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 UQCR10Q9UDW1 63 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 CBY1Q9Y3M2 126 aa5.81□□□□□ -1.48
LDLR-210ENST00000559340 ABCA13Q86UQ4 5058 aa5.8□□□□□ -1.48
LDLR-210ENST00000559340 TRBV10-2A0A0K0K1G8 114 aa5.8□□□□□ -1.48
LDLR-210ENST00000559340 PLA2G1BP04054 148 aaKnown RBP5.8□□□□□ -1.48
LDLR-210ENST00000559340 VPREB1P12018 145 aa5.8□□□□□ -1.48
LDLR-210ENST00000559340 SERTAD4-AS1Q5TG53 156 aa5.8□□□□□ -1.48
LDLR-210ENST00000559340 HIST1H4GQ99525 98 aa5.8□□□□□ -1.48
LDLR-210ENST00000559340 NPC2P61916 151 aa5.79□□□□□ -1.48
LDLR-210ENST00000559340 HAMPP81172 84 aa5.79□□□□□ -1.48
LDLR-210ENST00000559340 TAL2Q16559 108 aa5.79□□□□□ -1.48
LDLR-210ENST00000559340 PHF5AQ7RTV0 110 aaKnown RBP5.79□□□□□ -1.48
LDLR-210ENST00000559340 LINC00528Q8N1L1 170 aa5.79□□□□□ -1.48
LDLR-210ENST00000559340 Q8N1X5 172 aa5.79□□□□□ -1.48
LDLR-210ENST00000559340 SMR3BP02814 79 aaPredicted RBP5.78□□□□□ -1.48
LDLR-210ENST00000559340 MUSTN1Q8IVN3 82 aa5.78□□□□□ -1.48
LDLR-210ENST00000559340 LINC00167Q96N53 147 aa5.78□□□□□ -1.48
LDLR-210ENST00000559340 RPL37AP61513 92 aaKnown RBP5.77□□□□□ -1.49
LDLR-210ENST00000559340 S100A7L2Q5SY68 101 aa5.77□□□□□ -1.49
LDLR-210ENST00000559340 SOSTDC1Q6X4U4 206 aa5.77□□□□□ -1.49
LDLR-210ENST00000559340 KRTAP7-1Q8IUC3 87 aa5.77□□□□□ -1.49
LDLR-210ENST00000559340 TSTD3H0UI37 97 aa5.76□□□□□ -1.49
LDLR-210ENST00000559340 NCR3O14931 201 aa5.76□□□□□ -1.49
LDLR-210ENST00000559340 C12orf57Q99622 126 aa5.76□□□□□ -1.49
LDLR-210ENST00000559340 APOBP04114 4563 aaKnown RBP5.76□□□□□ -1.49
LDLR-210ENST00000559340 IGLV1-50A0A075B6I6 118 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 TRAV13-2A0A0B4J235 113 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 TMEM238LA0A1B0GVL6 79 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 GAGE10A6NGK3 116 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 A6NJY4 79 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 RPL37AP8A6NKH3 93 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 DDTP30046 118 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 HNRNPA3P51991 378 aaKnown RBP5.75□□□□□ -1.49
LDLR-210ENST00000559340 OR13C6PQ8NH95 151 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 TMEM126AQ9H061 195 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 HSPG2P98160 4391 aa5.75□□□□□ -1.49
LDLR-210ENST00000559340 PRYO14603 147 aa5.74□□□□□ -1.49
LDLR-210ENST00000559340 PRR3P79522 188 aaKnown RBP5.74□□□□□ -1.49
LDLR-210ENST00000559340 HSD52Q0P140 79 aa5.74□□□□□ -1.49
LDLR-210ENST00000559340 C2orf91Q6ZV80 131 aa5.74□□□□□ -1.49
LDLR-210ENST00000559340 PRO1933Q9H354 126 aa5.74□□□□□ -1.49
LDLR-210ENST00000559340 PSORS1C2Q9UIG4 136 aa5.74□□□□□ -1.49
LDLR-210ENST00000559340 IGKV2-28A0A075B6P5 120 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 TRBV10-3A0A0K0K1G6 114 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 A4D1N5 150 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 EIF4EBP3O60516 100 aaPredicted RBP5.73□□□□□ -1.49
LDLR-210ENST00000559340 IGKV2D-28P01615 120 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 HINT1P49773 126 aaPredicted RBP5.73□□□□□ -1.49
LDLR-210ENST00000559340 C1orf137Q5JT78 98 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 Q5VSD8 79 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 REG3GQ6UW15 175 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 CEND1Q8N111 149 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 Q8NDZ9 215 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 KCNQ1DNQ9H478 68 aa5.73□□□□□ -1.49
LDLR-210ENST00000559340 A6NDN8 102 aa5.72□□□□□ -1.49
LDLR-210ENST00000559340 IGLV6-57P01721 117 aa5.72□□□□□ -1.49
LDLR-210ENST00000559340 BCE1O60756 84 aa5.71□□□□□ -1.5
LDLR-210ENST00000559340 RAB37Q96AX2 223 aa5.71□□□□□ -1.5
LDLR-210ENST00000559340 TRAV23DV6A0A075B6W5 121 aa5.7□□□□□ -1.5
LDLR-210ENST00000559340 ETDCA0A1B0GVM5 59 aa5.7□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 173.7 ms