RNA–Protein interactions for RNA: ENST00000559119.1

VPS13C-208, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 2

Gene VPS13C, Length 738 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-208ENST00000559119 LINC00575Q6W349 94 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 C7orf65Q6ZTY9 151 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 LCA10Q71F78 164 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 LINC00269Q8N2A0 174 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 DEFB119Q8N690 84 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 C1orf64Q8NEQ6 169 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 MUC7Q8TAX7 377 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 COX7B2Q8TF08 81 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 DIRC1Q969H9 104 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 USMG5Q96IX5 58 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 LIMD2Q9BT23 127 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 C8orf17Q9NRJ1 99 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 CDC42SE2Q9NRR3 84 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 FREM1Q5H8C1 2179 aa1.58□□□□□ -2.16
VPS13C-208ENST00000559119 IGKV2D-29A0A075B6S2 120 aaPredicted RBP1.57□□□□□ -2.16
VPS13C-208ENST00000559119 A0A096LNT2 108 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 IGHV6-1A0A0B4J1U7 121 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 LOC101927531A0A1B0GV80 90 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 C8orf87E5RJ46 101 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 NDUFB1O75438 58 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 COX17Q14061 63 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 FBXL19-AS1Q494R0 122 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 RNASE13Q5GAN3 156 aaKnown RBP1.57□□□□□ -2.16
VPS13C-208ENST00000559119 Q5VV11 94 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 Q6ZTI0 123 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 Q9BRP9 147 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 NAV3Q8IVL0 2385 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 BRCA2P51587 3418 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 ARFGEF3Q5TH69 2177 aa1.57□□□□□ -2.16
VPS13C-208ENST00000559119 IGHV3OR16-8A0A075B7F1 116 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 HCG22E2RYF7 251 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 H3BPC8 53 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 COX7BP24311 80 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 PI4KAP42356 2102 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 LINC00158P58513 81 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP1.56□□□□□ -2.16
VPS13C-208ENST00000559119 SPANXA2-OT1Q8N9U9 137 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 DEFB104AQ8WTQ1 72 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 HIGD2AQ9BW72 106 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 RHPN1-AS1Q9BWJ2 59 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 CDC42SE1Q9NRR8 79 aa1.56□□□□□ -2.16
VPS13C-208ENST00000559119 MUC4Q99102 2169 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 A8MUN3 132 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 Q8IZM0 81 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 MALRD1Q5VYJ5 2156 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 DOCK10Q96BY6 2186 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 HTTP42858 3142 aa1.55□□□□□ -2.16
VPS13C-208ENST00000559119 CENPFP49454 3210 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 TRGV2A0A075B6R0 118 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 ETDCA0A1B0GVM5 59 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 CHKB-CPT1BH3BT56 60 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 J3QKU1 62 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 M0R2N4 97 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 DEFB1P60022 68 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 C5orf56Q8N8D9 126 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 B9D2Q9BPU9 175 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 FAM215AQ9Y5M1 114 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 ZGRF1Q86YA3 2104 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 F5P12259 2224 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 ASXL3Q9C0F0 2248 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 NCOR1O75376 2440 aa1.54□□□□□ -2.16
VPS13C-208ENST00000559119 DNAH12Q6ZR08 3092 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 G3V318 75 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 C3orf84H3BNL1 204 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 C19orf84I3L1E1 186 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 IGLV6-57P01721 117 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 CNBPP62633 177 aaKnown RBP1.53□□□□□ -2.16
VPS13C-208ENST00000559119 BSPH1Q075Z2 132 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 C9orf116Q5BN46 136 aaPredicted RBP1.53□□□□□ -2.16
VPS13C-208ENST00000559119 ASCC3Q8N3C0 2202 aaKnown RBP1.53□□□□□ -2.16
VPS13C-208ENST00000559119 CIRBP-AS1Q8TBR5 109 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 KCNQ1DNQ9H478 68 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 PLAC8Q9NZF1 115 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 LINC01558Q9Y6Z2 57 aa1.53□□□□□ -2.16
VPS13C-208ENST00000559119 PLXNB1O43157 2135 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 ARHGAP32A7KAX9 2087 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 IGLV5-48A0A075B6I7 105 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 IGHV3-73A0A0B4J1V6 119 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 LINC00959A0A1B0GUT2 108 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 PRM2P04554 102 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 SPINK13Q1W4C9 94 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 LINC01554Q52M75 96 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 LUZP6Q538Z0 58 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 Q6ZQY7 126 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 TMEM105Q8N8V8 129 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 LINC00208Q96KT6 92 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 PRO3102Q9H379 93 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 TOMM7Q9P0U1 55 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 CACNA1GO43497 2377 aa1.52□□□□□ -2.17
VPS13C-208ENST00000559119 CDH23Q9H251 3354 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 LAMA3Q16787 3333 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 GVQW2A0A096LPI5 108 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-208ENST00000559119 A6NED7 52 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 MP68P56378 58 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 PRB3Q04118 309 aaPredicted RBP1.51□□□□□ -2.17
VPS13C-208ENST00000559119 CASC2Q6XLA1 102 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 SCXQ7RTU7 201 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 SPTSSBQ8NFR3 76 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 FDCSPQ8NFU4 85 aa1.51□□□□□ -2.17
VPS13C-208ENST00000559119 SPRR4Q96PI1 79 aa1.51□□□□□ -2.17
Retrieved 100 of 20,778 RNA–protein pairs in 114.2 ms