RNA–Protein interactions for RNA: ENST00000558989.1

SPG11-214, Transcript of SPG11, spatacsin vesicle trafficking associated, humanhuman

TSL 3

Gene SPG11, Length 1,816 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SPG11-214ENST00000558989 UBE2D1P51668 147 aa6.11□□□□□ -1.43
SPG11-214ENST00000558989 SCGB3A1Q96QR1 104 aa6.11□□□□□ -1.43
SPG11-214ENST00000558989 IGIPA6NJ69 53 aa6.1□□□□□ -1.43
SPG11-214ENST00000558989 TOMM6Q96B49 74 aa6.1□□□□□ -1.43
SPG11-214ENST00000558989 TOMM7Q9P0U1 55 aa6.1□□□□□ -1.43
SPG11-214ENST00000558989 MYCBP2O75592 4640 aa6.09□□□□□ -1.43
SPG11-214ENST00000558989 CIRBPQ14011 172 aaKnown RBP6.09□□□□□ -1.43
SPG11-214ENST00000558989 JOSD1Q15040 202 aaPredicted RBP6.09□□□□□ -1.43
SPG11-214ENST00000558989 UNQ6190/PRO20217Q6UXQ8 127 aa6.09□□□□□ -1.43
SPG11-214ENST00000558989 NKAPP1Q8N9T2 125 aa6.09□□□□□ -1.43
SPG11-214ENST00000558989 AMELXQ99217 191 aa6.09□□□□□ -1.43
SPG11-214ENST00000558989 DMBT1Q9UGM3 2413 aaPredicted RBP6.09□□□□□ -1.43
SPG11-214ENST00000558989 LOC107984640A0A0U1RRK4 108 aa6.09□□□□□ -1.44
SPG11-214ENST00000558989 K7EMI3 77 aa6.09□□□□□ -1.44
SPG11-214ENST00000558989 KRTAP10-4P60372 401 aaPredicted RBP6.09□□□□□ -1.44
SPG11-214ENST00000558989 PMCHL1Q16048 86 aa6.09□□□□□ -1.44
SPG11-214ENST00000558989 OR10D4PQ8NGN7 298 aa6.09□□□□□ -1.44
SPG11-214ENST00000558989 K7ERU9 68 aa6.08□□□□□ -1.44
SPG11-214ENST00000558989 NDUFA1O15239 70 aa6.08□□□□□ -1.44
SPG11-214ENST00000558989 C2orf82Q6UX34 121 aa6.08□□□□□ -1.44
SPG11-214ENST00000558989 PLEKHB2Q96CS7 222 aa6.08□□□□□ -1.44
SPG11-214ENST00000558989 BORCS8-MEF2BH3BNR1 382 aaPredicted RBP6.07□□□□□ -1.44
SPG11-214ENST00000558989 NDUFA6P56556 154 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 Q6ZRP5 223 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 C18orf32Q8TCD1 76 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 PRAC1Q96KF2 57 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 TIMM17AQ99595 171 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 PLAC8Q9NZF1 115 aa6.07□□□□□ -1.44
SPG11-214ENST00000558989 J3KT08 172 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 NDUFC2O95298 119 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 NDUFV3P56181 108 aaKnown RBP6.06□□□□□ -1.44
SPG11-214ENST00000558989 KIAA0087Q14695 138 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 C7orf33Q8WU49 177 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 C6orf48Q9UBA6 75 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 CDKN2A-AS1Q9UH64 79 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 C9orf116Q5BN46 136 aaPredicted RBP6.06□□□□□ -1.44
SPG11-214ENST00000558989 OCR1Q9BZK8 76 aa6.06□□□□□ -1.44
SPG11-214ENST00000558989 A0A1W2PNN7 141 aa6.05□□□□□ -1.44
SPG11-214ENST00000558989 C6orf99Q4VX62 202 aa6.05□□□□□ -1.44
SPG11-214ENST00000558989 LINC00337Q8N6G1 96 aa6.05□□□□□ -1.44
SPG11-214ENST00000558989 LINC01546A6NGU7 62 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 HERVK_113P63121 156 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 YPEL4Q96NS1 127 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 MRPL35Q9NZE8 188 aaKnown RBP6.04□□□□□ -1.44
SPG11-214ENST00000558989 LINC00474Q9P2X8 69 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 LRP1Q07954 4544 aaKnown RBP6.04□□□□□ -1.44
SPG11-214ENST00000558989 A0A096LNJ9 63 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 FAM168BA1KXE4 195 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 RBM12B-AS1Q9P1G2 102 aa6.04□□□□□ -1.44
SPG11-214ENST00000558989 SMIM26A0A096LP01 95 aa6.03□□□□□ -1.44
SPG11-214ENST00000558989 IGHV6-1A0A0B4J1U7 121 aa6.03□□□□□ -1.44
SPG11-214ENST00000558989 SPINK8P0C7L1 97 aa6.03□□□□□ -1.44
SPG11-214ENST00000558989 XP32Q5T750 250 aa6.03□□□□□ -1.44
SPG11-214ENST00000558989 CST9LQ9H4G1 147 aa6.03□□□□□ -1.44
SPG11-214ENST00000558989 HERC1Q15751 4861 aa6.02□□□□□ -1.45
SPG11-214ENST00000558989 HBDP02042 147 aa6.02□□□□□ -1.45
SPG11-214ENST00000558989 SEC11AP67812 179 aa6.02□□□□□ -1.45
SPG11-214ENST00000558989 PHF5AQ7RTV0 110 aaKnown RBP6.02□□□□□ -1.45
SPG11-214ENST00000558989 SCO1O75880 301 aa6.02□□□□□ -1.45
SPG11-214ENST00000558989 FAM19A3Q7Z5A8 133 aa6.02□□□□□ -1.45
SPG11-214ENST00000558989 PKHD1L1Q86WI1 4243 aa6.01□□□□□ -1.45
SPG11-214ENST00000558989 KRTAP4-8Q9BYQ9 185 aa6.01□□□□□ -1.45
SPG11-214ENST00000558989 TRBV30A0A0K0K1B3 111 aa6□□□□□ -1.45
SPG11-214ENST00000558989 LINC01549A6NIU2 74 aa6□□□□□ -1.45
SPG11-214ENST00000558989 COLCA2A8K830 154 aa6□□□□□ -1.45
SPG11-214ENST00000558989 SMIM1B2RUZ4 78 aa6□□□□□ -1.45
SPG11-214ENST00000558989 TRGC2P03986 189 aa6□□□□□ -1.45
SPG11-214ENST00000558989 Q8IZM0 81 aa6□□□□□ -1.45
SPG11-214ENST00000558989 ANKRD29Q8N6D5 301 aa6□□□□□ -1.45
SPG11-214ENST00000558989 FAT3Q8TDW7 4589 aa6□□□□□ -1.45
SPG11-214ENST00000558989 REG3GQ6UW15 175 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 BAGE3Q86Y29 109 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 FAM19A2Q8N3H0 131 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 COX7B2Q8TF08 81 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 XAGE1AQ9HD64 81 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 ERG28Q9UKR5 140 aa5.99□□□□□ -1.45
SPG11-214ENST00000558989 KRTAP29-1A8MX34 341 aaPredicted RBP5.98□□□□□ -1.45
SPG11-214ENST00000558989 NDUFC2-KCTD14E9PQ53 114 aa5.98□□□□□ -1.45
SPG11-214ENST00000558989 TLX1NBP0CAT3 122 aa5.98□□□□□ -1.45
SPG11-214ENST00000558989 PRR4Q16378 134 aa5.98□□□□□ -1.45
SPG11-214ENST00000558989 COA6Q5JTJ3 125 aaKnown RBP5.98□□□□□ -1.45
SPG11-214ENST00000558989 C9orf129Q5T035 196 aaKnown RBP5.98□□□□□ -1.45
SPG11-214ENST00000558989 F8VRH5 84 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 H3BRM9 83 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 TMEM170BQ5T4T1 132 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 C11orf86A6NJI1 115 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 IGLC3P0DOY3 106 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 ZNF22P17026 224 aaPredicted RBP5.97□□□□□ -1.45
SPG11-214ENST00000558989 MP68P56378 58 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 OCIAD2Q56VL3 154 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 C1orf137Q5JT78 98 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 PSORS1C2Q9UIG4 136 aa5.97□□□□□ -1.45
SPG11-214ENST00000558989 RPL37AP8A6NKH3 93 aa5.96□□□□□ -1.46
SPG11-214ENST00000558989 UBE2BP63146 152 aa5.96□□□□□ -1.46
SPG11-214ENST00000558989 KRTAP11-1Q8IUC1 163 aa5.96□□□□□ -1.46
SPG11-214ENST00000558989 KRTAP7-1Q8IUC3 87 aa5.96□□□□□ -1.46
SPG11-214ENST00000558989 CHCHD1Q96BP2 118 aaKnown RBP5.96□□□□□ -1.46
SPG11-214ENST00000558989 ZNF625Q96I27 306 aaPredicted RBP5.96□□□□□ -1.46
SPG11-214ENST00000558989 AKR1D1P51857 326 aa5.95□□□□□ -1.46
SPG11-214ENST00000558989 IFI27L1Q96BM0 104 aa5.95□□□□□ -1.46
Retrieved 100 of 20,778 RNA–protein pairs in 35.3 ms