RNA–Protein interactions for RNA: ENST00000558919.1

VPS13C-207, Transcript of vacuolar protein sorting 13 homolog C, humanhuman

TSL 5

Gene VPS13C, Length 566 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13C-207ENST00000558919 TRBV7-4A0A0J9YYF1 115 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 TRBV7-7A0A0K0K1E9 115 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 H3BQF6 201 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 SYS1-DBNDD2H3BUS1 97 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 I3L2K1 104 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 WFDC2Q14508 124 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 LCN9Q8WX39 176 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 MXRA5Q9NR99 2828 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 TSC2P49815 1807 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 PLXNA1Q9UIW2 1896 aa0.28□□□□□ -2.36
VPS13C-207ENST00000558919 REV3LO60673 3130 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 STAB2Q8WWQ8 2551 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 MAGI1Q96QZ7 1491 aaPredicted RBP0.28□□□□□ -2.37
VPS13C-207ENST00000558919 SPEGQ15772 3267 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 EPRSP07814 1512 aaKnown RBP0.28□□□□□ -2.37
VPS13C-207ENST00000558919 TGP01266 2768 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 TENM2Q9NT68 2774 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 AKAP13Q12802 2813 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 ABCA8O94911 1581 aa0.28□□□□□ -2.37
VPS13C-207ENST00000558919 NRXN3Q9Y4C0 1643 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 CFAP54Q96N23 3096 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 WDR87Q6ZQQ6 2873 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 OTOGQ6ZRI0 2925 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 GYPAP02724 150 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 ARMS2P0C7Q2 107 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 GNGT1P63211 74 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 DEFB107AQ8IZN7 70 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 V9GYS6 101 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 HTTP42858 3142 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 MKI67P46013 3256 aaKnown RBP0.27□□□□□ -2.37
VPS13C-207ENST00000558919 DMBT1Q9UGM3 2413 aaPredicted RBP0.27□□□□□ -2.37
VPS13C-207ENST00000558919 C1orf167Q5SNV9 1468 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 ARHGEF12Q9NZN5 1544 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 ADAMTS12P58397 1594 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 ARHGEF5Q12774 1597 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 CEP170BQ9Y4F5 1589 aaPredicted RBP0.27□□□□□ -2.37
VPS13C-207ENST00000558919 C3P01024 1663 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 COL4A6Q14031 1691 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 ITSN2Q9NZM3 1697 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 PRRC2CQ9Y520 2896 aaKnown RBP0.27□□□□□ -2.37
VPS13C-207ENST00000558919 CRYBG3Q68DQ2 2970 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 EP400Q96L91 3159 aa0.27□□□□□ -2.37
VPS13C-207ENST00000558919 F8P00451 2351 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 ZFHX4Q86UP3 3567 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 LINC00959A0A1B0GUT2 108 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 H0Y9P7 68 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 SMIM11AP58511 58 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 HMGN3Q15651 99 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 ETDBQ3ZM63 59 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 LRRC9Q6ZRR7 1453 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 RAPGEF2Q9Y4G8 1499 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 PAPPAQ13219 1627 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 ABCA6Q8N139 1617 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 TOPAZ1Q8N9V7 1692 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 ANKRD26Q9UPS8 1709 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 LTN1O94822 1766 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 PATJQ8NI35 1801 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 KIAA0100Q14667 2235 aaKnown RBP0.26□□□□□ -2.37
VPS13C-207ENST00000558919 MED13LQ71F56 2210 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 ABCA1O95477 2261 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 DOPEY2Q9Y3R5 2298 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 HIVEP1P15822 2718 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 NIPBLQ6KC79 2804 aaeCLIP0.26□□□□□ -2.37
VPS13C-207ENST00000558919 DSPP15924 2871 aaKnown RBP0.26□□□□□ -2.37
VPS13C-207ENST00000558919 LRBAP50851 2863 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 CELSR1Q9NYQ6 3014 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 BSNQ9UPA5 3926 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 FAT3Q8TDW7 4589 aa0.26□□□□□ -2.37
VPS13C-207ENST00000558919 VCANP13611 3396 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 C5orf42Q9H799 3197 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 ITPR2Q14571 2701 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 WNK1Q9H4A3 2382 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 APC2O95996 2303 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 MYH7P12883 1935 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 ARFGEF1Q9Y6D6 1849 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 RGPD3A6NKT7 1758 aaPredicted RBP0.25□□□□□ -2.37
VPS13C-207ENST00000558919 RGPD4Q7Z3J3 1758 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 HMCN2Q8NDA2 5059 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 PLCH1Q4KWH8 1693 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 GLI2P10070 1586 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 SAMD9Q5K651 1589 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 ERVK-7P63135 1459 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 PLEKHH2Q8IVE3 1493 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 ANK2Q01484 3957 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 A0A1B0GU69 56 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 F8WEM9 126 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 LEPROTL1O95214 131 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 COX6B1P14854 86 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 Q5VSD8 79 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 ALKAL2Q6UX46 152 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 C6orf201Q7Z4U5 140 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 U3KQA8 63 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 SZT2Q5T011 3432 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 SONP18583 2426 aaKnown RBP0.25□□□□□ -2.37
VPS13C-207ENST00000558919 RELNP78509 3460 aa0.25□□□□□ -2.37
VPS13C-207ENST00000558919 DOCK1Q14185 1865 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 PARP14Q460N5 1801 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 ITSN1Q15811 1721 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 C5P01031 1676 aa0.24□□□□□ -2.37
VPS13C-207ENST00000558919 ZNF831Q5JPB2 1677 aa0.24□□□□□ -2.37
Retrieved 100 of 20,778 RNA–protein pairs in 30.2 ms