RNA–Protein interactions for RNA: ENST00000558013.5

LDLR-207, Transcript of low density lipoprotein receptor, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LDLR, Length 3,144 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-207ENST00000558013 RETNQ9HD89 108 aa8.7□□□□□ -1.02
LDLR-207ENST00000558013 RPL18AQ02543 176 aaKnown RBP8.7□□□□□ -1.02
LDLR-207ENST00000558013 S100A7L2Q5SY68 101 aa8.69□□□□□ -1.02
LDLR-207ENST00000558013 SPART-AS1P0CW21 52 aa8.69□□□□□ -1.02
LDLR-207ENST00000558013 COX17Q14061 63 aa8.69□□□□□ -1.02
LDLR-207ENST00000558013 WFDC9Q8NEX5 89 aa8.69□□□□□ -1.02
LDLR-207ENST00000558013 F8P00451 2351 aa8.69□□□□□ -1.02
LDLR-207ENST00000558013 NDUFC2O95298 119 aa8.68□□□□□ -1.02
LDLR-207ENST00000558013 MIFP14174 115 aa8.67□□□□□ -1.02
LDLR-207ENST00000558013 LELP1Q5T871 98 aa8.67□□□□□ -1.02
LDLR-207ENST00000558013 OXLD1Q5BKU9 147 aa8.67□□□□□ -1.02
LDLR-207ENST00000558013 SMIM20Q8N5G0 67 aa8.67□□□□□ -1.02
LDLR-207ENST00000558013 LINC00167Q96N53 147 aa8.67□□□□□ -1.02
LDLR-207ENST00000558013 HIGD2BQ4VC39 106 aa8.66□□□□□ -1.02
LDLR-207ENST00000558013 LYPD5Q6UWN5 251 aa8.66□□□□□ -1.02
LDLR-207ENST00000558013 WFDC10BQ8IUB3 73 aa8.66□□□□□ -1.02
LDLR-207ENST00000558013 CCKP06307 115 aa8.65□□□□□ -1.02
LDLR-207ENST00000558013 PRR34Q9NV39 138 aa8.65□□□□□ -1.02
LDLR-207ENST00000558013 M0R2N4 97 aa8.65□□□□□ -1.02
LDLR-207ENST00000558013 C6orf48Q9UBA6 75 aa8.65□□□□□ -1.02
LDLR-207ENST00000558013 LINC00575Q6W349 94 aa8.65□□□□□ -1.03
LDLR-207ENST00000558013 CYSTM1Q9H1C7 97 aa8.65□□□□□ -1.03
LDLR-207ENST00000558013 C9orf153Q5TBE3 101 aa8.64□□□□□ -1.03
LDLR-207ENST00000558013 NBEAL1Q6ZS30 2694 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 TMEM256-PLSCR3K7ERE1 68 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 C3orf22Q8N5N4 141 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 C2orf48Q96LS8 159 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 TRBV10-3A0A0K0K1G6 114 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 HIST1H4AP62805 103 aaKnown RBP8.63□□□□□ -1.03
LDLR-207ENST00000558013 A0A0J9YWU9 116 aa8.63□□□□□ -1.03
LDLR-207ENST00000558013 BAHCC1Q9P281 2608 aa8.62□□□□□ -1.03
LDLR-207ENST00000558013 Q6JHZ5 121 aa8.62□□□□□ -1.03
LDLR-207ENST00000558013 A0A1B0GX51 115 aa8.61□□□□□ -1.03
LDLR-207ENST00000558013 hADV29S1A0JD25 119 aa8.61□□□□□ -1.03
LDLR-207ENST00000558013 Q6ZQY7 126 aa8.61□□□□□ -1.03
LDLR-207ENST00000558013 Q6ZTC4 211 aa8.61□□□□□ -1.03
LDLR-207ENST00000558013 FAM19A1Q7Z5A9 133 aa8.61□□□□□ -1.03
LDLR-207ENST00000558013 IGLV6-57P01721 117 aa8.6□□□□□ -1.03
LDLR-207ENST00000558013 KRTAP10-11P60412 298 aa8.6□□□□□ -1.03
LDLR-207ENST00000558013 JMJD7-PLA2G4BH0Y9G9 81 aa8.6□□□□□ -1.03
LDLR-207ENST00000558013 UQCRQO14949 82 aa8.6□□□□□ -1.03
LDLR-207ENST00000558013 KPRPQ5T749 579 aaPredicted RBP8.6□□□□□ -1.03
LDLR-207ENST00000558013 LAMTOR3Q9UHA4 124 aa8.6□□□□□ -1.03
LDLR-207ENST00000558013 COL6A5A8TX70 2615 aa8.59□□□□□ -1.03
LDLR-207ENST00000558013 COX7CP15954 63 aa8.59□□□□□ -1.03
LDLR-207ENST00000558013 USP17L23D6RBM5 183 aa8.58□□□□□ -1.04
LDLR-207ENST00000558013 Q6ZRU5 148 aa8.57□□□□□ -1.04
LDLR-207ENST00000558013 CAMK2N2Q96S95 79 aa8.57□□□□□ -1.04
LDLR-207ENST00000558013 RBM3P98179 157 aaKnown RBP8.56□□□□□ -1.04
LDLR-207ENST00000558013 TRAV23DV6A0A075B6W5 121 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 ZNF561-AS1K7EIQ3 104 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 ATOX1O00244 68 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 ESRGQ1W209 222 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 KRTAP26-1Q6PEX3 210 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 Q6ZQT0 140 aa8.56□□□□□ -1.04
LDLR-207ENST00000558013 CMYA5Q8N3K9 4069 aa8.54□□□□□ -1.04
LDLR-207ENST00000558013 C15orf56Q8N910 161 aa8.54□□□□□ -1.04
LDLR-207ENST00000558013 ZNF73O43830 326 aaPredicted RBP8.54□□□□□ -1.04
LDLR-207ENST00000558013 GVQW2A0A096LPI5 108 aaPredicted RBP8.54□□□□□ -1.04
LDLR-207ENST00000558013 DIRC1Q969H9 104 aa8.53□□□□□ -1.04
LDLR-207ENST00000558013 VPREB1P12018 145 aa8.52□□□□□ -1.05
LDLR-207ENST00000558013 LOC107984640A0A0U1RRK4 108 aa8.52□□□□□ -1.05
LDLR-207ENST00000558013 WIPF1O43516 503 aa8.52□□□□□ -1.05
LDLR-207ENST00000558013 UBL5Q9BZL1 73 aa8.51□□□□□ -1.05
LDLR-207ENST00000558013 Q6ZRP5 223 aa8.51□□□□□ -1.05
LDLR-207ENST00000558013 IGKV2D-24A0A075B6R9 120 aa8.51□□□□□ -1.05
LDLR-207ENST00000558013 HAMPP81172 84 aa8.51□□□□□ -1.05
LDLR-207ENST00000558013 SERP2Q8N6R1 65 aa8.51□□□□□ -1.05
LDLR-207ENST00000558013 CRYGAP11844 174 aa8.5□□□□□ -1.05
LDLR-207ENST00000558013 COX7BP24311 80 aa8.49□□□□□ -1.05
LDLR-207ENST00000558013 SCXQ7RTU7 201 aa8.49□□□□□ -1.05
LDLR-207ENST00000558013 DSCR8Q96T75 97 aa8.49□□□□□ -1.05
LDLR-207ENST00000558013 UPK3BQ9BT76 320 aa8.49□□□□□ -1.05
LDLR-207ENST00000558013 GHRHP01286 108 aa8.49□□□□□ -1.05
LDLR-207ENST00000558013 PRB2P02812 416 aaPredicted RBP8.49□□□□□ -1.05
LDLR-207ENST00000558013 LYSTQ99698 3801 aa8.48□□□□□ -1.05
LDLR-207ENST00000558013 LOC110117498A0A087WWA1 95 aa8.48□□□□□ -1.05
LDLR-207ENST00000558013 ELOF1P60002 83 aaKnown RBP8.48□□□□□ -1.05
LDLR-207ENST00000558013 Q6ZVQ6 151 aa8.48□□□□□ -1.05
LDLR-207ENST00000558013 LINC01547P58512 204 aaPredicted RBP8.47□□□□□ -1.05
LDLR-207ENST00000558013 MUC7Q8TAX7 377 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 MGAM2Q2M2H8 2515 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 DEFB131BA0A096LNP1 70 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 NDUFC2-KCTD14E9PQ53 114 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 EGFEM1PQ0D2K5 195 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 C1orf43Q9BWL3 253 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 CSMD3Q7Z407 3707 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 TENM2Q9NT68 2774 aa8.47□□□□□ -1.05
LDLR-207ENST00000558013 CASC10Q5T4H9 136 aa8.45□□□□□ -1.06
LDLR-207ENST00000558013 SERTAD4-AS1Q5TG53 156 aa8.45□□□□□ -1.06
LDLR-207ENST00000558013 M0R378 163 aa8.45□□□□□ -1.06
LDLR-207ENST00000558013 KRTAP24-1Q3LI83 254 aa8.45□□□□□ -1.06
LDLR-207ENST00000558013 STAB2Q8WWQ8 2551 aa8.44□□□□□ -1.06
LDLR-207ENST00000558013 TRAV10A0A0B4J240 114 aa8.44□□□□□ -1.06
LDLR-207ENST00000558013 C11orf45Q8TAV5 145 aa8.44□□□□□ -1.06
LDLR-207ENST00000558013 H3BNG1 76 aa8.43□□□□□ -1.06
LDLR-207ENST00000558013 ATP5EP2Q5VTU8 51 aa8.43□□□□□ -1.06
LDLR-207ENST00000558013 LINC00528Q8N1L1 170 aa8.43□□□□□ -1.06
LDLR-207ENST00000558013 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.43□□□□□ -1.06
LDLR-207ENST00000558013 DEFB105AQ8NG35 78 aa8.43□□□□□ -1.06
Retrieved 100 of 20,778 RNA–protein pairs in 56.9 ms