RNA–Protein interactions for RNA: ENST00000557845.1

NEDD4-212, Transcript of neural precursor cell expressed, developmentally down-regulated 4, E3 ubiquitin protein ligase, humanhuman

TSL 2

Gene NEDD4, Length 374 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NEDD4-212ENST00000557845 COLCA2A8K830 154 aa9.93□□□□□ -0.82
NEDD4-212ENST00000557845 UBE2AP49459 152 aa9.93□□□□□ -0.82
NEDD4-212ENST00000557845 KRTAP13-1Q8IUC0 172 aa9.93□□□□□ -0.82
NEDD4-212ENST00000557845 A0A0U1RRA0 63 aa9.92□□□□□ -0.82
NEDD4-212ENST00000557845 H0Y8G0 127 aa9.92□□□□□ -0.82
NEDD4-212ENST00000557845 TMEM126AQ9H061 195 aa9.9□□□□□ -0.82
NEDD4-212ENST00000557845 A0A087X002 238 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 TMEM238C9JI98 176 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 ATP6V1G1O75348 118 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 SMIM13P0DJ93 91 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 HERV-K104P63124 156 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 MEIG1Q5JSS6 88 aa9.89□□□□□ -0.83
NEDD4-212ENST00000557845 M0R378 163 aa9.88□□□□□ -0.83
NEDD4-212ENST00000557845 CRYGAP11844 174 aa9.88□□□□□ -0.83
NEDD4-212ENST00000557845 FABP4P15090 132 aa9.88□□□□□ -0.83
NEDD4-212ENST00000557845 FAM19A1Q7Z5A9 133 aa9.88□□□□□ -0.83
NEDD4-212ENST00000557845 HSPB8Q9UJY1 196 aa9.88□□□□□ -0.83
NEDD4-212ENST00000557845 LINC00587B1AMM8 73 aa9.87□□□□□ -0.83
NEDD4-212ENST00000557845 PRLHP81277 87 aa9.87□□□□□ -0.83
NEDD4-212ENST00000557845 ANAPC11Q9NYG5 84 aa9.87□□□□□ -0.83
NEDD4-212ENST00000557845 NDUFA12Q9UI09 145 aa9.87□□□□□ -0.83
NEDD4-212ENST00000557845 MYMXA0A1B0GTQ4 84 aa9.86□□□□□ -0.83
NEDD4-212ENST00000557845 PLNP26678 52 aa9.86□□□□□ -0.83
NEDD4-212ENST00000557845 MIR7-3HGQ8N6C7 128 aa9.86□□□□□ -0.83
NEDD4-212ENST00000557845 LPAP08519 4548 aa9.86□□□□□ -0.83
NEDD4-212ENST00000557845 LEPROTO15243 131 aa9.85□□□□□ -0.83
NEDD4-212ENST00000557845 TYMSOSQ8TAI1 123 aa9.85□□□□□ -0.83
NEDD4-212ENST00000557845 BOD1L2Q8IYS8 172 aa9.84□□□□□ -0.83
NEDD4-212ENST00000557845 RNF213Q63HN8 5207 aa9.84□□□□□ -0.83
NEDD4-212ENST00000557845 DPM2O94777 84 aa9.83□□□□□ -0.84
NEDD4-212ENST00000557845 TSPEAR-AS2P59090 65 aa9.83□□□□□ -0.84
NEDD4-212ENST00000557845 PLEKHB2Q96CS7 222 aa9.83□□□□□ -0.84
NEDD4-212ENST00000557845 PMCHL2Q9BQD1 86 aa9.83□□□□□ -0.84
NEDD4-212ENST00000557845 MAP1LC3CQ9BXW4 147 aa9.83□□□□□ -0.84
NEDD4-212ENST00000557845 TSPAN13O95857 204 aa9.82□□□□□ -0.84
NEDD4-212ENST00000557845 IGKCP01834 107 aa9.82□□□□□ -0.84
NEDD4-212ENST00000557845 FAM229BQ4G0N7 80 aa9.82□□□□□ -0.84
NEDD4-212ENST00000557845 KRTAP13-2Q52LG2 175 aa9.82□□□□□ -0.84
NEDD4-212ENST00000557845 J3QQQ9 107 aa9.81□□□□□ -0.84
NEDD4-212ENST00000557845 IGKV2D-26A0A0A0MRZ7 120 aa9.8□□□□□ -0.84
NEDD4-212ENST00000557845 HERVK_113P61574 105 aa9.8□□□□□ -0.84
NEDD4-212ENST00000557845 NCR3O14931 201 aa9.79□□□□□ -0.84
NEDD4-212ENST00000557845 PRR4Q16378 134 aa9.79□□□□□ -0.84
NEDD4-212ENST00000557845 LOC107984156A0A0G2JMH3 177 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BKO60814 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BJP06899 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BOP23527 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BBP33778 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 NMUP48645 174 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BDP58876 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BCP62807 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST2H2BEQ16778 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.78□□□□□ -0.84
NEDD4-212ENST00000557845 ARL17AQ8IVW1 177 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BHQ93079 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BNQ99877 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIST1H2BMQ99879 126 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 HIGD2AQ9BW72 106 aa9.78□□□□□ -0.84
NEDD4-212ENST00000557845 PRYO14603 147 aa9.77□□□□□ -0.85
NEDD4-212ENST00000557845 LGALS3P17931 250 aaKnown RBP9.77□□□□□ -0.85
NEDD4-212ENST00000557845 DAND5Q8N907 189 aa9.77□□□□□ -0.85
NEDD4-212ENST00000557845 KCNQ1DNQ9H478 68 aa9.77□□□□□ -0.85
NEDD4-212ENST00000557845 SPRR1AP35321 89 aa9.76□□□□□ -0.85
NEDD4-212ENST00000557845 LINC00337Q8N6G1 96 aa9.75□□□□□ -0.85
NEDD4-212ENST00000557845 TRBV10-3A0A0K0K1G6 114 aa9.74□□□□□ -0.85
NEDD4-212ENST00000557845 SYS1-DBNDD2H3BUS1 97 aa9.74□□□□□ -0.85
NEDD4-212ENST00000557845 E9PLD3 99 aa9.73□□□□□ -0.85
NEDD4-212ENST00000557845 KRTAP4-16G5E9R7 235 aaPredicted RBP9.73□□□□□ -0.85
NEDD4-212ENST00000557845 TRBV10-2A0A0K0K1G8 114 aa9.72□□□□□ -0.85
NEDD4-212ENST00000557845 LINC00304Q8N9R0 145 aa9.72□□□□□ -0.85
NEDD4-212ENST00000557845 SPRR4Q96PI1 79 aa9.72□□□□□ -0.85
NEDD4-212ENST00000557845 ETDCA0A1B0GVM5 59 aa9.71□□□□□ -0.86
NEDD4-212ENST00000557845 S100A12P80511 92 aa9.71□□□□□ -0.86
NEDD4-212ENST00000557845 SMCR5Q8TEV8 140 aa9.71□□□□□ -0.86
NEDD4-212ENST00000557845 MIEN1Q9BRT3 115 aa9.71□□□□□ -0.86
NEDD4-212ENST00000557845 A0A0J9YXY3 114 aa9.7□□□□□ -0.86
NEDD4-212ENST00000557845 DDTP30046 118 aa9.7□□□□□ -0.86
NEDD4-212ENST00000557845 C3orf22Q8N5N4 141 aa9.7□□□□□ -0.86
NEDD4-212ENST00000557845 ZNF706Q9Y5V0 76 aaPredicted RBP9.7□□□□□ -0.86
NEDD4-212ENST00000557845 NDUFC2O95298 119 aa9.69□□□□□ -0.86
NEDD4-212ENST00000557845 ADAMTSL4-AS1Q5T5F5 129 aa9.69□□□□□ -0.86
NEDD4-212ENST00000557845 LINC01545Q5VT33 79 aa9.69□□□□□ -0.86
NEDD4-212ENST00000557845 PET117Q6UWS5 81 aa9.68□□□□□ -0.86
NEDD4-212ENST00000557845 SPANXB1Q9NS25 103 aaPredicted RBP9.68□□□□□ -0.86
NEDD4-212ENST00000557845 B5MCH6 92 aa9.67□□□□□ -0.86
NEDD4-212ENST00000557845 CTAG1AP78358 180 aa9.67□□□□□ -0.86
NEDD4-212ENST00000557845 SOSTDC1Q6X4U4 206 aa9.67□□□□□ -0.86
NEDD4-212ENST00000557845 EIF4EBP3O60516 100 aaPredicted RBP9.66□□□□□ -0.86
NEDD4-212ENST00000557845 NPC2P61916 151 aa9.66□□□□□ -0.86
NEDD4-212ENST00000557845 S100A7L2Q5SY68 101 aa9.66□□□□□ -0.86
NEDD4-212ENST00000557845 IGLV6-57P01721 117 aa9.65□□□□□ -0.86
NEDD4-212ENST00000557845 C3orf79P0CE67 100 aa9.65□□□□□ -0.86
NEDD4-212ENST00000557845 COA6Q5JTJ3 125 aaKnown RBP9.65□□□□□ -0.86
NEDD4-212ENST00000557845 RETNLBQ9BQ08 111 aa9.65□□□□□ -0.86
NEDD4-212ENST00000557845 PPDPFQ9H3Y8 114 aa9.64□□□□□ -0.87
NEDD4-212ENST00000557845 SPAG11AQ6PDA7 123 aa9.63□□□□□ -0.87
NEDD4-212ENST00000557845 ERC2-IT1O76042 136 aa9.62□□□□□ -0.87
NEDD4-212ENST00000557845 Q6ZRX8 168 aa9.62□□□□□ -0.87
NEDD4-212ENST00000557845 LITAFQ99732 161 aa9.62□□□□□ -0.87
NEDD4-212ENST00000557845 Q9BRP9 147 aa9.62□□□□□ -0.87
Retrieved 100 of 20,778 RNA–protein pairs in 67.1 ms