RNA–Protein interactions for RNA: ENST00000556909.1

VIPAS39-209, Transcript of VPS33B interacting protein, apical-basolateral polarity regulator, spe-39 homolog, humanhuman

TSL 4

Gene VIPAS39, Length 540 nt, Biotype processed transcript, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VIPAS39-209ENST00000556909 FABP9Q0Z7S8 132 aa10.4□□□□□ -0.74
VIPAS39-209ENST00000556909 COX19Q49B96 90 aa10.4□□□□□ -0.74
VIPAS39-209ENST00000556909 SFTA2Q6UW10 78 aa10.4□□□□□ -0.74
VIPAS39-209ENST00000556909 FP248Q71RG6 208 aaPredicted RBP10.4□□□□□ -0.74
VIPAS39-209ENST00000556909 URB1-AS1Q96HZ7 61 aa10.39□□□□□ -0.75
VIPAS39-209ENST00000556909 C11orf86A6NJI1 115 aa10.38□□□□□ -0.75
VIPAS39-209ENST00000556909 UQCC3Q6UW78 93 aa10.38□□□□□ -0.75
VIPAS39-209ENST00000556909 TMEM170BQ5T4T1 132 aa10.37□□□□□ -0.75
VIPAS39-209ENST00000556909 ZNF706Q9Y5V0 76 aaPredicted RBP10.37□□□□□ -0.75
VIPAS39-209ENST00000556909 HBDP02042 147 aa10.36□□□□□ -0.75
VIPAS39-209ENST00000556909 KRTAP13-3Q3SY46 172 aa10.36□□□□□ -0.75
VIPAS39-209ENST00000556909 Q8NBF4 154 aa10.36□□□□□ -0.75
VIPAS39-209ENST00000556909 LINC00158P58513 81 aa10.35□□□□□ -0.75
VIPAS39-209ENST00000556909 PMCHL1Q16048 86 aa10.35□□□□□ -0.75
VIPAS39-209ENST00000556909 C4orf48Q5BLP8 95 aa10.35□□□□□ -0.75
VIPAS39-209ENST00000556909 DAND5Q8N907 189 aa10.35□□□□□ -0.75
VIPAS39-209ENST00000556909 SEC11CQ9BY50 192 aa10.35□□□□□ -0.75
VIPAS39-209ENST00000556909 BAGE3Q86Y29 109 aa10.34□□□□□ -0.75
VIPAS39-209ENST00000556909 LINC00337Q8N6G1 96 aa10.34□□□□□ -0.75
VIPAS39-209ENST00000556909 C18orf32Q8TCD1 76 aa10.34□□□□□ -0.75
VIPAS39-209ENST00000556909 A0A0U1RRA0 63 aa10.33□□□□□ -0.76
VIPAS39-209ENST00000556909 PRYO14603 147 aa10.33□□□□□ -0.76
VIPAS39-209ENST00000556909 LINC00614P0C842 121 aa10.33□□□□□ -0.76
VIPAS39-209ENST00000556909 ASB16-AS1Q495Z4 193 aa10.33□□□□□ -0.76
VIPAS39-209ENST00000556909 SPRR1AP35321 89 aa10.31□□□□□ -0.76
VIPAS39-209ENST00000556909 KRTAP4-16G5E9R7 235 aaPredicted RBP10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 NCR3O14931 201 aa10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 SPINK1P00995 79 aa10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 BOD1L2Q8IYS8 172 aa10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 SMCR5Q8TEV8 140 aa10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 KRTAP4-1Q9BYQ7 146 aa10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 CHTOPQ9Y3Y2 248 aaKnown RBP10.29□□□□□ -0.76
VIPAS39-209ENST00000556909 TMEM223A0PJW6 202 aa10.28□□□□□ -0.76
VIPAS39-209ENST00000556909 SMIM13P0DJ93 91 aa10.28□□□□□ -0.76
VIPAS39-209ENST00000556909 RHEBQ15382 184 aa10.28□□□□□ -0.76
VIPAS39-209ENST00000556909 KCNQ1DNQ9H478 68 aa10.28□□□□□ -0.76
VIPAS39-209ENST00000556909 LINC01547P58512 204 aaPredicted RBP10.27□□□□□ -0.77
VIPAS39-209ENST00000556909 LINC00483Q53H64 154 aa10.27□□□□□ -0.77
VIPAS39-209ENST00000556909 TRAPPC1Q9Y5R8 145 aa10.27□□□□□ -0.77
VIPAS39-209ENST00000556909 ETDCA0A1B0GVM5 59 aa10.26□□□□□ -0.77
VIPAS39-209ENST00000556909 RPS10P5Q9NQ39 176 aa10.26□□□□□ -0.77
VIPAS39-209ENST00000556909 ATP6V1G1O75348 118 aa10.25□□□□□ -0.77
VIPAS39-209ENST00000556909 MEIG1Q5JSS6 88 aa10.25□□□□□ -0.77
VIPAS39-209ENST00000556909 C10orf91Q5T1B1 145 aa10.25□□□□□ -0.77
VIPAS39-209ENST00000556909 LCE2DQ5TA82 110 aaPredicted RBP10.25□□□□□ -0.77
VIPAS39-209ENST00000556909 MIR7-3HGQ8N6C7 128 aa10.25□□□□□ -0.77
VIPAS39-209ENST00000556909 TRBV10-3A0A0K0K1G6 114 aa10.24□□□□□ -0.77
VIPAS39-209ENST00000556909 SEC61BP60468 96 aaKnown RBP10.24□□□□□ -0.77
VIPAS39-209ENST00000556909 IFITM2Q01629 132 aa10.23□□□□□ -0.77
VIPAS39-209ENST00000556909 MOBPQ13875 183 aa10.23□□□□□ -0.77
VIPAS39-209ENST00000556909 GAGE2AQ6NT46 116 aa10.23□□□□□ -0.77
VIPAS39-209ENST00000556909 TRAV12-1A0A0B4J245 112 aa10.22□□□□□ -0.77
VIPAS39-209ENST00000556909 COMMD7Q86VX2 200 aa10.22□□□□□ -0.77
VIPAS39-209ENST00000556909 Q8N377 158 aa10.22□□□□□ -0.77
VIPAS39-209ENST00000556909 NDUFA12Q9UI09 145 aa10.22□□□□□ -0.77
VIPAS39-209ENST00000556909 IGLV9-49A0A0B4J1Y8 123 aa10.21□□□□□ -0.77
VIPAS39-209ENST00000556909 RPS29P62273 56 aaKnown RBP10.21□□□□□ -0.77
VIPAS39-209ENST00000556909 HERV-K104P63124 156 aa10.21□□□□□ -0.77
VIPAS39-209ENST00000556909 B5MCH6 92 aa10.2□□□□□ -0.78
VIPAS39-209ENST00000556909 FAM19A2Q8N3H0 131 aa10.2□□□□□ -0.78
VIPAS39-209ENST00000556909 IFI27L1Q96BM0 104 aa10.2□□□□□ -0.78
VIPAS39-209ENST00000556909 ERC2-IT1O76042 136 aa10.19□□□□□ -0.78
VIPAS39-209ENST00000556909 LINC00587B1AMM8 73 aa10.17□□□□□ -0.78
VIPAS39-209ENST00000556909 S100A12P80511 92 aa10.17□□□□□ -0.78
VIPAS39-209ENST00000556909 SSBP3-AS1Q7Z2R9 100 aa10.17□□□□□ -0.78
VIPAS39-209ENST00000556909 Q9BRP9 147 aa10.17□□□□□ -0.78
VIPAS39-209ENST00000556909 MAP1LC3CQ9BXW4 147 aa10.16□□□□□ -0.78
VIPAS39-209ENST00000556909 MYMXA0A1B0GTQ4 84 aa10.15□□□□□ -0.78
VIPAS39-209ENST00000556909 SLC25A20O43772 301 aa10.15□□□□□ -0.78
VIPAS39-209ENST00000556909 XP32Q5T750 250 aa10.15□□□□□ -0.78
VIPAS39-209ENST00000556909 CHCHD1Q96BP2 118 aaKnown RBP10.15□□□□□ -0.78
VIPAS39-209ENST00000556909 DDTP30046 118 aa10.14□□□□□ -0.79
VIPAS39-209ENST00000556909 Q6ZRX8 168 aa10.14□□□□□ -0.79
VIPAS39-209ENST00000556909 TSPEAR-AS2P59090 65 aa10.13□□□□□ -0.79
VIPAS39-209ENST00000556909 LOC107984156A0A0G2JMH3 177 aa10.12□□□□□ -0.79
VIPAS39-209ENST00000556909 TRBV10-2A0A0K0K1G8 114 aa10.12□□□□□ -0.79
VIPAS39-209ENST00000556909 ARL17AQ8IVW1 177 aa10.12□□□□□ -0.79
VIPAS39-209ENST00000556909 FSIP2Q5CZC0 6907 aa10.1□□□□□ -0.79
VIPAS39-209ENST00000556909 LCE2CQ5TA81 110 aa10.09□□□□□ -0.79
VIPAS39-209ENST00000556909 C9orf153Q5TBE3 101 aa10.09□□□□□ -0.79
VIPAS39-209ENST00000556909 SPANXB1Q9NS25 103 aaPredicted RBP10.09□□□□□ -0.79
VIPAS39-209ENST00000556909 CRCT1Q9UGL9 99 aa10.08□□□□□ -0.8
VIPAS39-209ENST00000556909 H0Y8G0 127 aa10.07□□□□□ -0.8
VIPAS39-209ENST00000556909 LEPROTO15243 131 aa10.07□□□□□ -0.8
VIPAS39-209ENST00000556909 IGLV6-57P01721 117 aa10.07□□□□□ -0.8
VIPAS39-209ENST00000556909 APOC3P02656 99 aa10.07□□□□□ -0.8
VIPAS39-209ENST00000556909 HSBP1O75506 76 aa10.06□□□□□ -0.8
VIPAS39-209ENST00000556909 YPEL4Q96NS1 127 aa10.06□□□□□ -0.8
VIPAS39-209ENST00000556909 MIEN1Q9BRT3 115 aa10.06□□□□□ -0.8
VIPAS39-209ENST00000556909 TRAV23DV6A0A075B6W5 121 aa10.05□□□□□ -0.8
VIPAS39-209ENST00000556909 KRTAP19-2Q3LHN2 52 aa10.05□□□□□ -0.8
VIPAS39-209ENST00000556909 S100A7L2Q5SY68 101 aa10.05□□□□□ -0.8
VIPAS39-209ENST00000556909 SNAPINO95295 136 aa10.04□□□□□ -0.8
VIPAS39-209ENST00000556909 NDUFC2O95298 119 aa10.04□□□□□ -0.8
VIPAS39-209ENST00000556909 JOSD1Q15040 202 aaPredicted RBP10.04□□□□□ -0.8
VIPAS39-209ENST00000556909 J3QQQ9 107 aa10.03□□□□□ -0.8
VIPAS39-209ENST00000556909 SVBPQ8N300 66 aa10.03□□□□□ -0.8
VIPAS39-209ENST00000556909 ST20-AS1Q8NBB2 130 aa10.03□□□□□ -0.8
VIPAS39-209ENST00000556909 PLNP26678 52 aa10.02□□□□□ -0.81
VIPAS39-209ENST00000556909 ZNF73O43830 326 aaPredicted RBP10.01□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 36.2 ms