RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 LINC00526Q96FQ7 95 aa9.09□□□□□ -0.95
SHMT2-222ENST00000555774 FN1P02751 2386 aaKnown RBP9.09□□□□□ -0.95
SHMT2-222ENST00000555774 hADV29S1A0JD25 119 aa9.09□□□□□ -0.95
SHMT2-222ENST00000555774 RPL18AQ02543 176 aaKnown RBP9.08□□□□□ -0.96
SHMT2-222ENST00000555774 IGKV3D-7A0A0C4DH55 119 aa9.08□□□□□ -0.96
SHMT2-222ENST00000555774 ZNF561-AS1K7EIQ3 104 aa9.08□□□□□ -0.96
SHMT2-222ENST00000555774 COX7CP15954 63 aa9.08□□□□□ -0.96
SHMT2-222ENST00000555774 C9orf153Q5TBE3 101 aa9.07□□□□□ -0.96
SHMT2-222ENST00000555774 C6orf48Q9UBA6 75 aa9.07□□□□□ -0.96
SHMT2-222ENST00000555774 KMT2BQ9UMN6 2715 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-222ENST00000555774 LOC110117498A0A087WWA1 95 aa9.05□□□□□ -0.96
SHMT2-222ENST00000555774 FASNP49327 2511 aaKnown RBP9.05□□□□□ -0.96
SHMT2-222ENST00000555774 GCN1Q92616 2671 aaKnown RBP9.05□□□□□ -0.96
SHMT2-222ENST00000555774 C2orf48Q96LS8 159 aa9.05□□□□□ -0.96
SHMT2-222ENST00000555774 TRAV23DV6A0A075B6W5 121 aa9.04□□□□□ -0.96
SHMT2-222ENST00000555774 RBM3P98179 157 aaKnown RBP9.04□□□□□ -0.96
SHMT2-222ENST00000555774 DIRC1Q969H9 104 aa9.04□□□□□ -0.96
SHMT2-222ENST00000555774 TRBV7-6A0A0J9YX20 115 aa9.03□□□□□ -0.96
SHMT2-222ENST00000555774 TRBV10-3A0A0K0K1G6 114 aa9.03□□□□□ -0.96
SHMT2-222ENST00000555774 GHRHP01286 108 aa9.03□□□□□ -0.96
SHMT2-222ENST00000555774 KPRPQ5T749 579 aaPredicted RBP9.03□□□□□ -0.96
SHMT2-222ENST00000555774 PDE6GP18545 87 aa9.03□□□□□ -0.96
SHMT2-222ENST00000555774 UBL5Q9BZL1 73 aa9.03□□□□□ -0.96
SHMT2-222ENST00000555774 HELZ2Q9BYK8 2649 aaKnown RBP9.02□□□□□ -0.96
SHMT2-222ENST00000555774 CRYGAP11844 174 aa9.02□□□□□ -0.97
SHMT2-222ENST00000555774 EGFEM1PQ0D2K5 195 aa9.02□□□□□ -0.97
SHMT2-222ENST00000555774 Q6ZQT0 140 aa9.02□□□□□ -0.97
SHMT2-222ENST00000555774 KRTAP26-1Q6PEX3 210 aa9.02□□□□□ -0.97
SHMT2-222ENST00000555774 WFDC10BQ8IUB3 73 aa9.02□□□□□ -0.97
SHMT2-222ENST00000555774 F8WDY8 70 aa9.01□□□□□ -0.97
SHMT2-222ENST00000555774 CAMK2N2Q96S95 79 aa9.01□□□□□ -0.97
SHMT2-222ENST00000555774 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP9□□□□□ -0.97
SHMT2-222ENST00000555774 LAMTOR3Q9UHA4 124 aa9□□□□□ -0.97
SHMT2-222ENST00000555774 USP17L23D6RBM5 183 aa9□□□□□ -0.97
SHMT2-222ENST00000555774 SERP2Q8N6R1 65 aa9□□□□□ -0.97
SHMT2-222ENST00000555774 ZNF73O43830 326 aaPredicted RBP8.99□□□□□ -0.97
SHMT2-222ENST00000555774 COX7BP24311 80 aa8.99□□□□□ -0.97
SHMT2-222ENST00000555774 Q6ZQY7 126 aa8.99□□□□□ -0.97
SHMT2-222ENST00000555774 XAGE1AQ9HD64 81 aa8.99□□□□□ -0.97
SHMT2-222ENST00000555774 A0A087WVE0 104 aa8.99□□□□□ -0.97
SHMT2-222ENST00000555774 VPREB1P12018 145 aa8.99□□□□□ -0.97
SHMT2-222ENST00000555774 NBEAL2Q6ZNJ1 2754 aa8.98□□□□□ -0.97
SHMT2-222ENST00000555774 ELOF1P60002 83 aaKnown RBP8.98□□□□□ -0.97
SHMT2-222ENST00000555774 DSCR8Q96T75 97 aa8.98□□□□□ -0.97
SHMT2-222ENST00000555774 M0R378 163 aa8.98□□□□□ -0.97
SHMT2-222ENST00000555774 HIGD2BQ4VC39 106 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 Q6ZTC4 211 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 VWFP04275 2813 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 NDUFC2-KCTD14E9PQ53 114 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 C3orf56Q8N813 242 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 C15orf56Q8N910 161 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 RETNQ9HD89 108 aa8.97□□□□□ -0.97
SHMT2-222ENST00000555774 NOTCH2Q04721 2471 aa8.96□□□□□ -0.97
SHMT2-222ENST00000555774 KRTAP10-11P60412 298 aa8.96□□□□□ -0.97
SHMT2-222ENST00000555774 LINC01556Q5JQF7 62 aa8.96□□□□□ -0.97
SHMT2-222ENST00000555774 Q6ZRU5 148 aa8.96□□□□□ -0.98
SHMT2-222ENST00000555774 SMIM20Q8N5G0 67 aa8.96□□□□□ -0.98
SHMT2-222ENST00000555774 NSD1Q96L73 2696 aaPredicted RBP8.95□□□□□ -0.98
SHMT2-222ENST00000555774 C1orf43Q9BWL3 253 aa8.95□□□□□ -0.98
SHMT2-222ENST00000555774 OTOGQ6ZRI0 2925 aa8.94□□□□□ -0.98
SHMT2-222ENST00000555774 ESRGQ1W209 222 aa8.94□□□□□ -0.98
SHMT2-222ENST00000555774 OXLD1Q5BKU9 147 aa8.94□□□□□ -0.98
SHMT2-222ENST00000555774 BCE1O60756 84 aa8.93□□□□□ -0.98
SHMT2-222ENST00000555774 TRBV7-4A0A0J9YYF1 115 aa8.92□□□□□ -0.98
SHMT2-222ENST00000555774 UPK3BQ9BT76 320 aa8.92□□□□□ -0.98
SHMT2-222ENST00000555774 Q6ZVQ6 151 aa8.91□□□□□ -0.98
SHMT2-222ENST00000555774 FAM19A1Q7Z5A9 133 aa8.91□□□□□ -0.98
SHMT2-222ENST00000555774 LINC00528Q8N1L1 170 aa8.91□□□□□ -0.98
SHMT2-222ENST00000555774 DEFB131BA0A096LNP1 70 aa8.9□□□□□ -0.98
SHMT2-222ENST00000555774 CXCL6P80162 114 aa8.9□□□□□ -0.98
SHMT2-222ENST00000555774 LINC01547P58512 204 aaPredicted RBP8.89□□□□□ -0.99
SHMT2-222ENST00000555774 SYCNQ0VAF6 134 aa8.89□□□□□ -0.99
SHMT2-222ENST00000555774 TENM1Q9UKZ4 2725 aa8.89□□□□□ -0.99
SHMT2-222ENST00000555774 IGKV2D-24A0A075B6R9 120 aa8.89□□□□□ -0.99
SHMT2-222ENST00000555774 C11orf45Q8TAV5 145 aa8.89□□□□□ -0.99
SHMT2-222ENST00000555774 M0R2N4 97 aa8.88□□□□□ -0.99
SHMT2-222ENST00000555774 DNAH10OSP0CZ25 163 aa8.88□□□□□ -0.99
SHMT2-222ENST00000555774 TMEM258P61165 79 aa8.88□□□□□ -0.99
SHMT2-222ENST00000555774 Q6ZRP5 223 aa8.88□□□□□ -0.99
SHMT2-222ENST00000555774 HECTD1Q9ULT8 2610 aa8.87□□□□□ -0.99
SHMT2-222ENST00000555774 TEP1Q99973 2627 aaKnown RBP8.86□□□□□ -0.99
SHMT2-222ENST00000555774 TLX1NBP0CAT3 122 aa8.86□□□□□ -0.99
SHMT2-222ENST00000555774 KCNQ1DNQ9H478 68 aa8.86□□□□□ -0.99
SHMT2-222ENST00000555774 HAMPP81172 84 aa8.85□□□□□ -0.99
SHMT2-222ENST00000555774 PLA2G2DQ9UNK4 145 aa8.85□□□□□ -0.99
SHMT2-222ENST00000555774 J3KT08 172 aa8.85□□□□□ -0.99
SHMT2-222ENST00000555774 RPS28P62857 69 aaKnown RBP8.85□□□□□ -0.99
SHMT2-222ENST00000555774 NKAPP1Q8N9T2 125 aa8.84□□□□□ -0.99
SHMT2-222ENST00000555774 HIVEP1P15822 2718 aa8.84□□□□□ -0.99
SHMT2-222ENST00000555774 CYSTM1Q9H1C7 97 aa8.83□□□□□ -1
SHMT2-222ENST00000555774 ATRQ13535 2644 aa8.83□□□□□ -1
SHMT2-222ENST00000555774 KRTAP24-1Q3LI83 254 aa8.83□□□□□ -1
SHMT2-222ENST00000555774 TRAV7A0A075B6U4 112 aa8.82□□□□□ -1
SHMT2-222ENST00000555774 TRAV10A0A0B4J240 114 aa8.82□□□□□ -1
SHMT2-222ENST00000555774 TRRAPQ9Y4A5 3859 aa8.82□□□□□ -1
SHMT2-222ENST00000555774 IGLV5-37A0A075B6J1 123 aa8.81□□□□□ -1
SHMT2-222ENST00000555774 C7orf33Q8WU49 177 aa8.81□□□□□ -1
SHMT2-222ENST00000555774 MRAPQ8TCY5 172 aa8.8□□□□□ -1
SHMT2-222ENST00000555774 LOC107984640A0A0U1RRK4 108 aa8.8□□□□□ -1
SHMT2-222ENST00000555774 RMI2Q96E14 147 aa8.8□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 85.2 ms