RNA–Protein interactions for RNA: ENST00000555116.5

SHMT2-217, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 2

Gene SHMT2, Length 1,885 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-217ENST00000555116 A0A087WZ39 114 aa9.1□□□□□ -0.95
SHMT2-217ENST00000555116 A0A0J9YXY3 114 aa9.1□□□□□ -0.95
SHMT2-217ENST00000555116 TMEM238C9JI98 176 aa9.1□□□□□ -0.95
SHMT2-217ENST00000555116 PANO1I0J062 215 aa9.1□□□□□ -0.95
SHMT2-217ENST00000555116 SMR3BP02814 79 aaPredicted RBP9.1□□□□□ -0.95
SHMT2-217ENST00000555116 SCGB1A1P11684 91 aa9.1□□□□□ -0.95
SHMT2-217ENST00000555116 SYCNQ0VAF6 134 aa9.09□□□□□ -0.95
SHMT2-217ENST00000555116 CIRBP-AS1Q8TBR5 109 aa9.09□□□□□ -0.95
SHMT2-217ENST00000555116 CARD19Q96LW7 228 aa9.09□□□□□ -0.95
SHMT2-217ENST00000555116 NDUFA12Q9UI09 145 aa9.09□□□□□ -0.95
SHMT2-217ENST00000555116 SPAG11BQ08648 103 aa9.08□□□□□ -0.96
SHMT2-217ENST00000555116 CIRBPQ14011 172 aaKnown RBP9.08□□□□□ -0.96
SHMT2-217ENST00000555116 C2orf48Q96LS8 159 aa9.08□□□□□ -0.96
SHMT2-217ENST00000555116 IGLV5-39A0A0G2JS06 123 aa9.08□□□□□ -0.96
SHMT2-217ENST00000555116 LINC01561Q8N1V8 128 aa9.08□□□□□ -0.96
SHMT2-217ENST00000555116 Q6ZRU5 148 aa9.07□□□□□ -0.96
SHMT2-217ENST00000555116 CHTF8P0CG12 524 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 SIGMAR1Q99720 223 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 LITAFQ99732 161 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 SMIM1B2RUZ4 78 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 EPM2AB3EWF7 344 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 KIAA0087Q14695 138 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 CAMK2N2Q96S95 79 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 FAT1Q14517 4588 aa9.06□□□□□ -0.96
SHMT2-217ENST00000555116 NDUFA1O15239 70 aa9.05□□□□□ -0.96
SHMT2-217ENST00000555116 Q5VSD8 79 aa9.05□□□□□ -0.96
SHMT2-217ENST00000555116 SPACA4Q8TDM5 124 aa9.05□□□□□ -0.96
SHMT2-217ENST00000555116 F8WDY8 70 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 CFC1BP0CG36 223 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 CFC1P0CG37 223 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 LYRM7Q5U5X0 104 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 MUSTN1Q8IVN3 82 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 ADAMTSL4-AS1Q5T5F5 129 aa9.04□□□□□ -0.96
SHMT2-217ENST00000555116 A0A096LNI7 61 aa9.03□□□□□ -0.96
SHMT2-217ENST00000555116 A4D1N5 150 aa9.03□□□□□ -0.96
SHMT2-217ENST00000555116 LINC00528Q8N1L1 170 aa9.03□□□□□ -0.96
SHMT2-217ENST00000555116 H3BMG7 143 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 FAM229AH3BQW9 127 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 TIMM17BO60830 172 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 C10orf25Q5T742 122 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 SPANXDQ9BXN6 97 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 SPANXCQ9NY87 97 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 PKIGQ9Y2B9 76 aa9.02□□□□□ -0.96
SHMT2-217ENST00000555116 VPS13BQ7Z7G8 4022 aa9.02□□□□□ -0.97
SHMT2-217ENST00000555116 IGKV2-24A0A0C4DH68 120 aa9.02□□□□□ -0.97
SHMT2-217ENST00000555116 UNQ6190/PRO20217Q6UXQ8 127 aa9.02□□□□□ -0.97
SHMT2-217ENST00000555116 A0A087WYN8 130 aa9.01□□□□□ -0.97
SHMT2-217ENST00000555116 TSPAN13O95857 204 aa9.01□□□□□ -0.97
SHMT2-217ENST00000555116 PRSS2P07478 247 aa9.01□□□□□ -0.97
SHMT2-217ENST00000555116 LOC107984640A0A0U1RRK4 108 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 EIF4EBP3O60516 100 aaPredicted RBP9□□□□□ -0.97
SHMT2-217ENST00000555116 PLAC8Q9NZF1 115 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 C6orf48Q9UBA6 75 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 PRO1854Q9UHT4 67 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 ABCA13Q86UQ4 5058 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 DPH3Q96FX2 82 aa9□□□□□ -0.97
SHMT2-217ENST00000555116 ZNF625Q96I27 306 aaPredicted RBP9□□□□□ -0.97
SHMT2-217ENST00000555116 ETDBQ3ZM63 59 aa8.99□□□□□ -0.97
SHMT2-217ENST00000555116 C2orf82Q6UX34 121 aa8.99□□□□□ -0.97
SHMT2-217ENST00000555116 Q8IZM0 81 aa8.99□□□□□ -0.97
SHMT2-217ENST00000555116 A0A0B4J2C4 111 aa8.98□□□□□ -0.97
SHMT2-217ENST00000555116 TOMM7Q9P0U1 55 aa8.98□□□□□ -0.97
SHMT2-217ENST00000555116 LINC00474Q9P2X8 69 aa8.98□□□□□ -0.97
SHMT2-217ENST00000555116 PRO0461Q9UI25 63 aa8.98□□□□□ -0.97
SHMT2-217ENST00000555116 GAGE2BQ13066 116 aa8.98□□□□□ -0.97
SHMT2-217ENST00000555116 SRRM2Q9UQ35 2752 aaKnown RBP8.96□□□□□ -0.97
SHMT2-217ENST00000555116 TRBV30A0A0K0K1B3 111 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 A0A1B0GV72 72 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 PLA2G1BP04054 148 aaKnown RBP8.96□□□□□ -0.97
SHMT2-217ENST00000555116 TLX1NBP0CAT3 122 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 IFITM1P13164 125 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 KRTAP10-4P60372 401 aaPredicted RBP8.96□□□□□ -0.97
SHMT2-217ENST00000555116 HERV-K104P63124 156 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 C6orf226Q5I0X4 101 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 COX7B2Q8TF08 81 aa8.96□□□□□ -0.97
SHMT2-217ENST00000555116 PCLOQ9Y6V0 5065 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 TRBV20-1A0A075B6N2 111 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 LOC107984156A0A0G2JMH3 177 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 NPC2P61916 151 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 RPL18AQ02543 176 aaKnown RBP8.96□□□□□ -0.98
SHMT2-217ENST00000555116 SFTA2Q6UW10 78 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 ARL17AQ8IVW1 177 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 DAND5Q8N907 189 aa8.96□□□□□ -0.98
SHMT2-217ENST00000555116 INAFM2P0DMQ5 153 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 PSMB2P49721 201 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 CKS1BP61024 79 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 ERG28Q9UKR5 140 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 FLG2Q5D862 2391 aaPredicted RBP8.94□□□□□ -0.98
SHMT2-217ENST00000555116 C9orf116Q5BN46 136 aaPredicted RBP8.94□□□□□ -0.98
SHMT2-217ENST00000555116 Q6ZRP5 223 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 LINC00308Q8TCZ7 52 aa8.94□□□□□ -0.98
SHMT2-217ENST00000555116 MEIG1Q5JSS6 88 aa8.93□□□□□ -0.98
SHMT2-217ENST00000555116 MTURNQ8N3F0 131 aa8.93□□□□□ -0.98
SHMT2-217ENST00000555116 A0A0U1RRA0 63 aa8.92□□□□□ -0.98
SHMT2-217ENST00000555116 A0A1W2PNN7 141 aa8.92□□□□□ -0.98
SHMT2-217ENST00000555116 CXCL5P42830 114 aa8.92□□□□□ -0.98
SHMT2-217ENST00000555116 RPL37AP61513 92 aaKnown RBP8.92□□□□□ -0.98
SHMT2-217ENST00000555116 H7C2G1 150 aa8.91□□□□□ -0.98
SHMT2-217ENST00000555116 NDUFC2-KCTD14E9PQ53 114 aa8.91□□□□□ -0.98
SHMT2-217ENST00000555116 PPDPFLQ8WWR9 84 aa8.91□□□□□ -0.98
Retrieved 100 of 20,778 RNA–protein pairs in 51.1 ms