RNA–Protein interactions for RNA: ENST00000553544.1

SRP54-203, Transcript of signal recognition particle 54, humanhuman

TSL 2

Gene SRP54, Length 491 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SRP54-203ENST00000553544 LINC00587B1AMM8 73 aa7.14□□□□□ -1.27
SRP54-203ENST00000553544 IGLV7-43P04211 117 aa7.14□□□□□ -1.27
SRP54-203ENST00000553544 COX17Q14061 63 aa7.14□□□□□ -1.27
SRP54-203ENST00000553544 M0QXV9 152 aa7.13□□□□□ -1.27
SRP54-203ENST00000553544 DPM2O94777 84 aa7.13□□□□□ -1.27
SRP54-203ENST00000553544 FABP4P15090 132 aa7.13□□□□□ -1.27
SRP54-203ENST00000553544 AKR1D1P51857 326 aa7.13□□□□□ -1.27
SRP54-203ENST00000553544 LINC00310P59036 64 aa7.13□□□□□ -1.27
SRP54-203ENST00000553544 TMEM223A0PJW6 202 aa7.12□□□□□ -1.27
SRP54-203ENST00000553544 COA6Q5JTJ3 125 aaKnown RBP7.12□□□□□ -1.27
SRP54-203ENST00000553544 IGLV1-50A0A075B6I6 118 aa7.11□□□□□ -1.27
SRP54-203ENST00000553544 IGKCP01834 107 aa7.11□□□□□ -1.27
SRP54-203ENST00000553544 HERV-K104P63124 156 aa7.11□□□□□ -1.27
SRP54-203ENST00000553544 XAGE1AQ9HD64 81 aa7.11□□□□□ -1.27
SRP54-203ENST00000553544 C20orf202A1L168 122 aa7.1□□□□□ -1.27
SRP54-203ENST00000553544 LBHQ53QV2 105 aaPredicted RBP7.1□□□□□ -1.27
SRP54-203ENST00000553544 PLEKHB2Q96CS7 222 aa7.1□□□□□ -1.27
SRP54-203ENST00000553544 C22orf24Q9Y442 160 aa7.1□□□□□ -1.27
SRP54-203ENST00000553544 H0Y9J4 135 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 NUPR1O60356 82 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 NMUP48645 174 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 UBE2BP63146 152 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 PET117Q6UWS5 81 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 TP73-AS1Q9UF72 201 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 ERG28Q9UKR5 140 aa7.09□□□□□ -1.27
SRP54-203ENST00000553544 MYMXA0A1B0GTQ4 84 aa7.08□□□□□ -1.28
SRP54-203ENST00000553544 SYS1-DBNDD2H3BUS1 97 aa7.08□□□□□ -1.28
SRP54-203ENST00000553544 LORP23490 312 aaPredicted RBP7.08□□□□□ -1.28
SRP54-203ENST00000553544 FAT4Q6V0I7 4981 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 LEPROTO15243 131 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 S100A6P06703 90 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 LGALS3P17931 250 aaKnown RBP7.07□□□□□ -1.28
SRP54-203ENST00000553544 PFN2P35080 140 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 RPL24P83731 157 aaKnown RBP7.07□□□□□ -1.28
SRP54-203ENST00000553544 MEIG1Q5JSS6 88 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 NKAPP1Q8N9T2 125 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 ZNF625Q96I27 306 aaPredicted RBP7.07□□□□□ -1.28
SRP54-203ENST00000553544 NDUFA12Q9UI09 145 aa7.07□□□□□ -1.28
SRP54-203ENST00000553544 KRTAP1-4P0C5Y4 121 aa7.06□□□□□ -1.28
SRP54-203ENST00000553544 S100A2P29034 98 aa7.06□□□□□ -1.28
SRP54-203ENST00000553544 RPL13AP40429 203 aaKnown RBP7.06□□□□□ -1.28
SRP54-203ENST00000553544 LINC00158P58513 81 aa7.05□□□□□ -1.28
SRP54-203ENST00000553544 LINC01545Q5VT33 79 aa7.05□□□□□ -1.28
SRP54-203ENST00000553544 MRPL55Q7Z7F7 128 aaKnown RBP7.05□□□□□ -1.28
SRP54-203ENST00000553544 IGLV5-37A0A075B6J1 123 aa7.04□□□□□ -1.28
SRP54-203ENST00000553544 J3QQQ9 107 aa7.04□□□□□ -1.28
SRP54-203ENST00000553544 ZNF861PO60384 105 aa7.04□□□□□ -1.28
SRP54-203ENST00000553544 KRTDAPP60985 99 aa7.03□□□□□ -1.28
SRP54-203ENST00000553544 LINC00167Q96N53 147 aa7.03□□□□□ -1.28
SRP54-203ENST00000553544 E9PLD3 99 aa7.02□□□□□ -1.29
SRP54-203ENST00000553544 C3orf79P0CE67 100 aa7.02□□□□□ -1.29
SRP54-203ENST00000553544 PMCHL2Q9BQD1 86 aa7.02□□□□□ -1.29
SRP54-203ENST00000553544 MIEN1Q9BRT3 115 aa7.02□□□□□ -1.29
SRP54-203ENST00000553544 SND1-IT1Q9HBX3 110 aa7.02□□□□□ -1.29
SRP54-203ENST00000553544 TSPAN13O95857 204 aa7.01□□□□□ -1.29
SRP54-203ENST00000553544 RPL37AP8A6NKH3 93 aa7□□□□□ -1.29
SRP54-203ENST00000553544 BCE1O60756 84 aa7□□□□□ -1.29
SRP54-203ENST00000553544 SNRPEP62304 92 aaKnown RBP7□□□□□ -1.29
SRP54-203ENST00000553544 S100A12P80511 92 aa7□□□□□ -1.29
SRP54-203ENST00000553544 SMIM13P0DJ93 91 aa6.99□□□□□ -1.29
SRP54-203ENST00000553544 MIR7-3HGQ8N6C7 128 aa6.99□□□□□ -1.29
SRP54-203ENST00000553544 IGKV2D-26A0A0A0MRZ7 120 aa6.98□□□□□ -1.29
SRP54-203ENST00000553544 GAGE10A6NGK3 116 aa6.98□□□□□ -1.29
SRP54-203ENST00000553544 VPREB1P12018 145 aa6.98□□□□□ -1.29
SRP54-203ENST00000553544 A0A0U1RRA0 63 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 HSBP1L1C9JCN9 74 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 RPL28P46779 137 aaKnown RBP6.97□□□□□ -1.29
SRP54-203ENST00000553544 TSPEAR-AS2P59090 65 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 KRTAP13-1Q8IUC0 172 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 BOD1L2Q8IYS8 172 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 HIST3H2BBQ8N257 126 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 COPS9Q8WXC6 57 aa6.97□□□□□ -1.29
SRP54-203ENST00000553544 Q8NDZ9 215 aa6.96□□□□□ -1.3
SRP54-203ENST00000553544 CBY1Q9Y3M2 126 aa6.96□□□□□ -1.3
SRP54-203ENST00000553544 ZNF815PA8K554 130 aa6.95□□□□□ -1.3
SRP54-203ENST00000553544 M0R378 163 aa6.95□□□□□ -1.3
SRP54-203ENST00000553544 HIST1H2BLQ99880 126 aa6.95□□□□□ -1.3
SRP54-203ENST00000553544 IGKV2-28A0A075B6P5 120 aa6.94□□□□□ -1.3
SRP54-203ENST00000553544 A0A0J9YXY3 114 aa6.94□□□□□ -1.3
SRP54-203ENST00000553544 TIMM17BO60830 172 aa6.94□□□□□ -1.3
SRP54-203ENST00000553544 IGKV2D-28P01615 120 aa6.94□□□□□ -1.3
SRP54-203ENST00000553544 SCGB1D4Q6XE38 83 aa6.94□□□□□ -1.3
SRP54-203ENST00000553544 LOC107984156A0A0G2JMH3 177 aa6.93□□□□□ -1.3
SRP54-203ENST00000553544 TMEM238C9JI98 176 aa6.93□□□□□ -1.3
SRP54-203ENST00000553544 UBE2AP49459 152 aa6.93□□□□□ -1.3
SRP54-203ENST00000553544 ARL17AQ8IVW1 177 aa6.93□□□□□ -1.3
SRP54-203ENST00000553544 A0A087X002 238 aa6.92□□□□□ -1.3
SRP54-203ENST00000553544 TRBV10-2A0A0K0K1G8 114 aa6.92□□□□□ -1.3
SRP54-203ENST00000553544 PRYO14603 147 aa6.92□□□□□ -1.3
SRP54-203ENST00000553544 NDUFC2O95298 119 aa6.92□□□□□ -1.3
SRP54-203ENST00000553544 TMEM126AQ9H061 195 aa6.92□□□□□ -1.3
SRP54-203ENST00000553544 SPANXB1Q9NS25 103 aaPredicted RBP6.92□□□□□ -1.3
SRP54-203ENST00000553544 Q6ZVH6 145 aa6.91□□□□□ -1.3
SRP54-203ENST00000553544 TYMSOSQ8TAI1 123 aa6.91□□□□□ -1.3
SRP54-203ENST00000553544 CDIP1Q9H305 208 aa6.91□□□□□ -1.3
SRP54-203ENST00000553544 C5orf52A6NGY3 159 aa6.9□□□□□ -1.3
SRP54-203ENST00000553544 CRYGAP11844 174 aa6.9□□□□□ -1.3
SRP54-203ENST00000553544 NCR3O14931 201 aa6.89□□□□□ -1.31
SRP54-203ENST00000553544 PRLHP81277 87 aa6.89□□□□□ -1.31
SRP54-203ENST00000553544 S100A7L2Q5SY68 101 aa6.89□□□□□ -1.31
Retrieved 100 of 20,778 RNA–protein pairs in 72.4 ms