RNA–Protein interactions for RNA: ENST00000553324.5

SHMT2-204, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 4

Gene SHMT2, Length 566 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-204ENST00000553324 HIST1H2BDP58876 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BCP62807 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST2H2BEQ16778 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BHQ93079 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BNQ99877 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 HIST1H2BMQ99879 126 aa9.31□□□□□ -0.92
SHMT2-204ENST00000553324 MYMXA0A1B0GTQ4 84 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 RPL37AP8A6NKH3 93 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 BCE1O60756 84 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 HERVK_113P61574 105 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 PLEKHB2Q96CS7 222 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 NDUFA12Q9UI09 145 aa9.3□□□□□ -0.92
SHMT2-204ENST00000553324 GAGE10A6NGK3 116 aa9.29□□□□□ -0.92
SHMT2-204ENST00000553324 IGKCP01834 107 aa9.29□□□□□ -0.92
SHMT2-204ENST00000553324 RPL28P46779 137 aaKnown RBP9.29□□□□□ -0.92
SHMT2-204ENST00000553324 MEIG1Q5JSS6 88 aa9.29□□□□□ -0.92
SHMT2-204ENST00000553324 LEPROTO15243 131 aa9.28□□□□□ -0.92
SHMT2-204ENST00000553324 VPREB1P12018 145 aa9.28□□□□□ -0.92
SHMT2-204ENST00000553324 IGLV1-50A0A075B6I6 118 aa9.26□□□□□ -0.93
SHMT2-204ENST00000553324 A0A0U1RRA0 63 aa9.26□□□□□ -0.93
SHMT2-204ENST00000553324 SMIM13P0DJ93 91 aa9.26□□□□□ -0.93
SHMT2-204ENST00000553324 NMUP48645 174 aa9.26□□□□□ -0.93
SHMT2-204ENST00000553324 HMCN2Q8NDA2 5059 aa9.25□□□□□ -0.93
SHMT2-204ENST00000553324 J3QQQ9 107 aa9.25□□□□□ -0.93
SHMT2-204ENST00000553324 PMCHL2Q9BQD1 86 aa9.25□□□□□ -0.93
SHMT2-204ENST00000553324 IGKV2-28A0A075B6P5 120 aa9.24□□□□□ -0.93
SHMT2-204ENST00000553324 SYS1-DBNDD2H3BUS1 97 aa9.24□□□□□ -0.93
SHMT2-204ENST00000553324 IGKV2D-28P01615 120 aa9.24□□□□□ -0.93
SHMT2-204ENST00000553324 UBE2AP49459 152 aa9.24□□□□□ -0.93
SHMT2-204ENST00000553324 MIR7-3HGQ8N6C7 128 aa9.24□□□□□ -0.93
SHMT2-204ENST00000553324 M0R378 163 aa9.23□□□□□ -0.93
SHMT2-204ENST00000553324 LGALS3P17931 250 aaKnown RBP9.23□□□□□ -0.93
SHMT2-204ENST00000553324 RPL13AP40429 203 aaKnown RBP9.23□□□□□ -0.93
SHMT2-204ENST00000553324 COA6Q5JTJ3 125 aaKnown RBP9.23□□□□□ -0.93
SHMT2-204ENST00000553324 KRTAP1-4P0C5Y4 121 aa9.22□□□□□ -0.93
SHMT2-204ENST00000553324 PET117Q6UWS5 81 aa9.22□□□□□ -0.93
SHMT2-204ENST00000553324 PRR26Q8N8Z3 221 aa9.22□□□□□ -0.93
SHMT2-204ENST00000553324 IGKV2D-26A0A0A0MRZ7 120 aa9.21□□□□□ -0.94
SHMT2-204ENST00000553324 TSPEAR-AS2P59090 65 aa9.21□□□□□ -0.94
SHMT2-204ENST00000553324 BOD1L2Q8IYS8 172 aa9.21□□□□□ -0.94
SHMT2-204ENST00000553324 E9PLD3 99 aa9.2□□□□□ -0.94
SHMT2-204ENST00000553324 TMEM126AQ9H061 195 aa9.2□□□□□ -0.94
SHMT2-204ENST00000553324 LOC107984156A0A0G2JMH3 177 aa9.19□□□□□ -0.94
SHMT2-204ENST00000553324 LINC01545Q5VT33 79 aa9.19□□□□□ -0.94
SHMT2-204ENST00000553324 KRTAP13-1Q8IUC0 172 aa9.19□□□□□ -0.94
SHMT2-204ENST00000553324 ARL17AQ8IVW1 177 aa9.19□□□□□ -0.94
SHMT2-204ENST00000553324 Q8NDZ9 215 aa9.19□□□□□ -0.94
SHMT2-204ENST00000553324 S100A12P80511 92 aa9.18□□□□□ -0.94
SHMT2-204ENST00000553324 FAM19A1Q7Z5A9 133 aa9.18□□□□□ -0.94
SHMT2-204ENST00000553324 MIEN1Q9BRT3 115 aa9.17□□□□□ -0.94
SHMT2-204ENST00000553324 TMEM238C9JI98 176 aa9.16□□□□□ -0.94
SHMT2-204ENST00000553324 C3orf79P0CE67 100 aa9.15□□□□□ -0.94
SHMT2-204ENST00000553324 AKR1D1P51857 326 aa9.15□□□□□ -0.94
SHMT2-204ENST00000553324 TRBV10-2A0A0K0K1G8 114 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 C20orf202A1L168 122 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 PRYO14603 147 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 CRYGAP11844 174 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 KRTDAPP60985 99 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 KCNQ1DNQ9H478 68 aa9.14□□□□□ -0.95
SHMT2-204ENST00000553324 A0A0J9YXY3 114 aa9.13□□□□□ -0.95
SHMT2-204ENST00000553324 NCR3O14931 201 aa9.13□□□□□ -0.95
SHMT2-204ENST00000553324 NDUFC2O95298 119 aa9.13□□□□□ -0.95
SHMT2-204ENST00000553324 PRLHP81277 87 aa9.13□□□□□ -0.95
SHMT2-204ENST00000553324 DAND5Q8N907 189 aa9.13□□□□□ -0.95
SHMT2-204ENST00000553324 FAM229BQ4G0N7 80 aa9.11□□□□□ -0.95
SHMT2-204ENST00000553324 LINC00337Q8N6G1 96 aa9.11□□□□□ -0.95
SHMT2-204ENST00000553324 SPANXB1Q9NS25 103 aaPredicted RBP9.11□□□□□ -0.95
SHMT2-204ENST00000553324 TIMM17BO60830 172 aa9.1□□□□□ -0.95
SHMT2-204ENST00000553324 SPRR1AP35321 89 aa9.1□□□□□ -0.95
SHMT2-204ENST00000553324 TYMSOSQ8TAI1 123 aa9.1□□□□□ -0.95
SHMT2-204ENST00000553324 TRBV10-3A0A0K0K1G6 114 aa9.09□□□□□ -0.95
SHMT2-204ENST00000553324 ADAMTSL4-AS1Q5T5F5 129 aa9.09□□□□□ -0.95
SHMT2-204ENST00000553324 A0A087X002 238 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 ETDCA0A1B0GVM5 59 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 ZNF815PA8K554 130 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 DDTP30046 118 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 S100A7L2Q5SY68 101 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 HIGD2AQ9BW72 106 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 CBY1Q9Y3M2 126 aa9.08□□□□□ -0.96
SHMT2-204ENST00000553324 ZNF706Q9Y5V0 76 aaPredicted RBP9.07□□□□□ -0.96
SHMT2-204ENST00000553324 S100A2P29034 98 aa9.06□□□□□ -0.96
SHMT2-204ENST00000553324 ANAPC11Q9NYG5 84 aa9.06□□□□□ -0.96
SHMT2-204ENST00000553324 KRTAP4-16G5E9R7 235 aaPredicted RBP9.05□□□□□ -0.96
SHMT2-204ENST00000553324 IGLV6-57P01721 117 aa9.05□□□□□ -0.96
SHMT2-204ENST00000553324 S100A6P06703 90 aa9.05□□□□□ -0.96
SHMT2-204ENST00000553324 SNRPEP62304 92 aaKnown RBP9.05□□□□□ -0.96
SHMT2-204ENST00000553324 NPC2P61916 151 aa9.04□□□□□ -0.96
SHMT2-204ENST00000553324 SOSTDC1Q6X4U4 206 aa9.04□□□□□ -0.96
SHMT2-204ENST00000553324 LINC00308Q8TCZ7 52 aa9.04□□□□□ -0.96
SHMT2-204ENST00000553324 SPANXCQ9NY87 97 aa9.04□□□□□ -0.96
SHMT2-204ENST00000553324 UBR4Q5T4S7 5183 aa9.04□□□□□ -0.96
SHMT2-204ENST00000553324 COPS9Q8WXC6 57 aa9.03□□□□□ -0.96
SHMT2-204ENST00000553324 LITAFQ99732 161 aa9.03□□□□□ -0.96
SHMT2-204ENST00000553324 SCGB1D4Q6XE38 83 aa9.02□□□□□ -0.97
SHMT2-204ENST00000553324 HIST3H2BBQ8N257 126 aa9.02□□□□□ -0.97
SHMT2-204ENST00000553324 SMCR5Q8TEV8 140 aa9.02□□□□□ -0.97
SHMT2-204ENST00000553324 TRAV23DV6A0A075B6W5 121 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 B5MCH6 92 aa9.01□□□□□ -0.97
SHMT2-204ENST00000553324 HINT1P49773 126 aaPredicted RBP9.01□□□□□ -0.97
Retrieved 100 of 20,778 RNA–protein pairs in 38.6 ms