RNA–Protein interactions for RNA: ENST00000553308.1

SYNE2-209, Transcript of spectrin repeat containing nuclear envelope protein 2, humanhuman

TSL 4

Gene SYNE2, Length 557 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE2-209ENST00000553308 SPINK1P00995 79 aa5.05□□□□□ -1.6
SYNE2-209ENST00000553308 PMVKQ15126 192 aa5.05□□□□□ -1.6
SYNE2-209ENST00000553308 KRTAP19-2Q3LHN2 52 aa5.05□□□□□ -1.6
SYNE2-209ENST00000553308 MT-ND4LP03901 98 aa5.04□□□□□ -1.6
SYNE2-209ENST00000553308 MT1HP80294 61 aa5.04□□□□□ -1.6
SYNE2-209ENST00000553308 COX17Q14061 63 aa5.04□□□□□ -1.6
SYNE2-209ENST00000553308 XP32Q5T750 250 aa5.04□□□□□ -1.6
SYNE2-209ENST00000553308 ANAPC16Q96DE5 110 aa5.04□□□□□ -1.6
SYNE2-209ENST00000553308 IGLC3P0DOY3 106 aa5.03□□□□□ -1.6
SYNE2-209ENST00000553308 ZNF22P17026 224 aaPredicted RBP5.03□□□□□ -1.6
SYNE2-209ENST00000553308 Q8N377 158 aa5.03□□□□□ -1.6
SYNE2-209ENST00000553308 NDUFA12Q9UI09 145 aa5.03□□□□□ -1.6
SYNE2-209ENST00000553308 LINC01546A6NGU7 62 aa5.02□□□□□ -1.61
SYNE2-209ENST00000553308 LINC01549A6NIU2 74 aa5.02□□□□□ -1.61
SYNE2-209ENST00000553308 MOBPQ13875 183 aa5.02□□□□□ -1.61
SYNE2-209ENST00000553308 SMCR5Q8TEV8 140 aa5.02□□□□□ -1.61
SYNE2-209ENST00000553308 A0A1B0GVG6 124 aa5.01□□□□□ -1.61
SYNE2-209ENST00000553308 PRYO14603 147 aa5.01□□□□□ -1.61
SYNE2-209ENST00000553308 LINC00483Q53H64 154 aa5.01□□□□□ -1.61
SYNE2-209ENST00000553308 FAM19A2Q8N3H0 131 aa5.01□□□□□ -1.61
SYNE2-209ENST00000553308 IGLV9-49A0A0B4J1Y8 123 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 A0A0U1RRA0 63 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 SPRR1AP35321 89 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 NDUFA6P56556 154 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 LINC00158P58513 81 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 RPS29P62273 56 aaKnown RBP5□□□□□ -1.61
SYNE2-209ENST00000553308 GAGE2AQ6NT46 116 aa5□□□□□ -1.61
SYNE2-209ENST00000553308 KRTAP4-16G5E9R7 235 aaPredicted RBP4.99□□□□□ -1.61
SYNE2-209ENST00000553308 NCR3O14931 201 aa4.99□□□□□ -1.61
SYNE2-209ENST00000553308 SLC25A20O43772 301 aa4.99□□□□□ -1.61
SYNE2-209ENST00000553308 CFC1BP0CG36 223 aa4.99□□□□□ -1.61
SYNE2-209ENST00000553308 LORP23490 312 aaPredicted RBP4.99□□□□□ -1.61
SYNE2-209ENST00000553308 FA2HQ7L5A8 372 aa4.99□□□□□ -1.61
SYNE2-209ENST00000553308 A0A096LNJ9 63 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 ETDCA0A1B0GVM5 59 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 C11orf86A6NJI1 115 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 ERC2-IT1O76042 136 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 KRTAP10-6P60371 365 aaPredicted RBP4.98□□□□□ -1.61
SYNE2-209ENST00000553308 SFTA2Q6UW10 78 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 KCNQ1DNQ9H478 68 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 SMCO4Q9NRQ5 59 aa4.98□□□□□ -1.61
SYNE2-209ENST00000553308 PCOTHQ58A44 107 aa4.97□□□□□ -1.61
SYNE2-209ENST00000553308 TMEM170BQ5T4T1 132 aa4.97□□□□□ -1.61
SYNE2-209ENST00000553308 SSBP3-AS1Q7Z2R9 100 aa4.97□□□□□ -1.61
SYNE2-209ENST00000553308 BOD1L2Q8IYS8 172 aa4.97□□□□□ -1.61
SYNE2-209ENST00000553308 IGLV8-61A0A075B6I0 122 aa4.96□□□□□ -1.62
SYNE2-209ENST00000553308 TRBV10-3A0A0K0K1G6 114 aa4.96□□□□□ -1.62
SYNE2-209ENST00000553308 TRAV9-1A0A075B6T8 112 aa4.95□□□□□ -1.62
SYNE2-209ENST00000553308 B5MCH6 92 aa4.95□□□□□ -1.62
SYNE2-209ENST00000553308 SMIM13P0DJ93 91 aa4.95□□□□□ -1.62
SYNE2-209ENST00000553308 PMCHL1Q16048 86 aa4.94□□□□□ -1.62
SYNE2-209ENST00000553308 BAGE3Q86Y29 109 aa4.94□□□□□ -1.62
SYNE2-209ENST00000553308 MIR7-3HGQ8N6C7 128 aa4.94□□□□□ -1.62
SYNE2-209ENST00000553308 URB1-AS1Q96HZ7 61 aa4.94□□□□□ -1.62
SYNE2-209ENST00000553308 Q9BRP9 147 aa4.94□□□□□ -1.62
SYNE2-209ENST00000553308 ATP6V1G1O75348 118 aa4.93□□□□□ -1.62
SYNE2-209ENST00000553308 MEIG1Q5JSS6 88 aa4.93□□□□□ -1.62
SYNE2-209ENST00000553308 C9orf153Q5TBE3 101 aa4.93□□□□□ -1.62
SYNE2-209ENST00000553308 TMEM223A0PJW6 202 aa4.92□□□□□ -1.62
SYNE2-209ENST00000553308 C9orf92A6NGG3 77 aa4.92□□□□□ -1.62
SYNE2-209ENST00000553308 HBDP02042 147 aa4.92□□□□□ -1.62
SYNE2-209ENST00000553308 FABP9Q0Z7S8 132 aa4.92□□□□□ -1.62
SYNE2-209ENST00000553308 Q6ZRX8 168 aa4.92□□□□□ -1.62
SYNE2-209ENST00000553308 M0R2T5 61 aa4.91□□□□□ -1.62
SYNE2-209ENST00000553308 S100PP25815 95 aa4.91□□□□□ -1.62
SYNE2-209ENST00000553308 CHTOPQ9Y3Y2 248 aaKnown RBP4.91□□□□□ -1.62
SYNE2-209ENST00000553308 LINC00614P0C842 121 aa4.9□□□□□ -1.63
SYNE2-209ENST00000553308 DDTP30046 118 aa4.9□□□□□ -1.63
SYNE2-209ENST00000553308 S100A12P80511 92 aa4.9□□□□□ -1.63
SYNE2-209ENST00000553308 C18orf32Q8TCD1 76 aa4.9□□□□□ -1.63
SYNE2-209ENST00000553308 HERV-K104P63124 156 aa4.89□□□□□ -1.63
SYNE2-209ENST00000553308 COX19Q49B96 90 aa4.89□□□□□ -1.63
SYNE2-209ENST00000553308 SEC11CQ9BY50 192 aa4.89□□□□□ -1.63
SYNE2-209ENST00000553308 KRTAP9-7A8MTY7 169 aa4.88□□□□□ -1.63
SYNE2-209ENST00000553308 HRCT1Q6UXD1 115 aa4.88□□□□□ -1.63
SYNE2-209ENST00000553308 ST20-AS1Q8NBB2 130 aa4.88□□□□□ -1.63
SYNE2-209ENST00000553308 TRBV10-2A0A0K0K1G8 114 aa4.87□□□□□ -1.63
SYNE2-209ENST00000553308 KRTAP9-1A8MXZ3 250 aaPredicted RBP4.87□□□□□ -1.63
SYNE2-209ENST00000553308 LIMD2Q9BT23 127 aa4.87□□□□□ -1.63
SYNE2-209ENST00000553308 TMEM218A2RU14 115 aa4.86□□□□□ -1.63
SYNE2-209ENST00000553308 LINC00587B1AMM8 73 aa4.86□□□□□ -1.63
SYNE2-209ENST00000553308 IGLV6-57P01721 117 aa4.86□□□□□ -1.63
SYNE2-209ENST00000553308 COX6B2Q6YFQ2 88 aa4.86□□□□□ -1.63
SYNE2-209ENST00000553308 MAP1LC3CQ9BXW4 147 aa4.86□□□□□ -1.63
SYNE2-209ENST00000553308 SPANXB1Q9NS25 103 aaPredicted RBP4.86□□□□□ -1.63
SYNE2-209ENST00000553308 TRAV23DV6A0A075B6W5 121 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 TRAV12-1A0A0B4J245 112 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 LOC107984156A0A0G2JMH3 177 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 MYMXA0A1B0GTQ4 84 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 TSPEAR-AS2P59090 65 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 JOSD1Q15040 202 aaPredicted RBP4.85□□□□□ -1.63
SYNE2-209ENST00000553308 ARL17AQ8IVW1 177 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 IFI27L1Q96BM0 104 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 TRAPPC1Q9Y5R8 145 aa4.85□□□□□ -1.63
SYNE2-209ENST00000553308 CLLU1Q5K131 121 aa4.84□□□□□ -1.63
SYNE2-209ENST00000553308 S100A7L2Q5SY68 101 aa4.84□□□□□ -1.63
SYNE2-209ENST00000553308 UQCC3Q6UW78 93 aa4.84□□□□□ -1.63
SYNE2-209ENST00000553308 RPS10P5Q9NQ39 176 aa4.84□□□□□ -1.63
SYNE2-209ENST00000553308 ZNF73O43830 326 aaPredicted RBP4.83□□□□□ -1.64
SYNE2-209ENST00000553308 SPRR1BP22528 89 aa4.82□□□□□ -1.64
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms