RNA–Protein interactions for RNA: ENST00000551425.1

PTCH1-222, Transcript of patched 1, humanhuman

TSL 1 (best)

Gene PTCH1, Length 241 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-222ENST00000551425 PMVKQ15126 192 aa6.78□□□□□ -1.32
PTCH1-222ENST00000551425 HSPB8Q9UJY1 196 aa6.78□□□□□ -1.32
PTCH1-222ENST00000551425 IGKV2D-26A0A0A0MRZ7 120 aa6.77□□□□□ -1.33
PTCH1-222ENST00000551425 MT1HP80294 61 aa6.77□□□□□ -1.33
PTCH1-222ENST00000551425 IFI27L1Q96BM0 104 aa6.77□□□□□ -1.33
PTCH1-222ENST00000551425 PACRGQ96M98 296 aaPredicted RBP6.77□□□□□ -1.33
PTCH1-222ENST00000551425 FABP4P15090 132 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 SEC11AP67812 179 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 ZC2HC1BQ5TFG8 222 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 C2orf82Q6UX34 121 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 CST9LQ9H4G1 147 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 TP73-AS1Q9UF72 201 aa6.76□□□□□ -1.33
PTCH1-222ENST00000551425 LORP23490 312 aaPredicted RBP6.75□□□□□ -1.33
PTCH1-222ENST00000551425 KRTAP19-2Q3LHN2 52 aa6.75□□□□□ -1.33
PTCH1-222ENST00000551425 FAM19A3Q7Z5A8 133 aa6.75□□□□□ -1.33
PTCH1-222ENST00000551425 MRPL55Q7Z7F7 128 aaKnown RBP6.75□□□□□ -1.33
PTCH1-222ENST00000551425 KRTAP13-1Q8IUC0 172 aa6.75□□□□□ -1.33
PTCH1-222ENST00000551425 TRAV12-1A0A0B4J245 112 aa6.74□□□□□ -1.33
PTCH1-222ENST00000551425 HERVK_113P63121 156 aa6.74□□□□□ -1.33
PTCH1-222ENST00000551425 MAP1LC3CQ9BXW4 147 aa6.74□□□□□ -1.33
PTCH1-222ENST00000551425 TINCRA0A1B0GVN0 87 aa6.73□□□□□ -1.33
PTCH1-222ENST00000551425 S100A2P29034 98 aa6.73□□□□□ -1.33
PTCH1-222ENST00000551425 GEMIN7Q9H840 131 aaKnown RBP6.73□□□□□ -1.33
PTCH1-222ENST00000551425 CHTOPQ9Y3Y2 248 aaKnown RBP6.73□□□□□ -1.33
PTCH1-222ENST00000551425 SNRPEP62304 92 aaKnown RBP6.72□□□□□ -1.33
PTCH1-222ENST00000551425 SPAG11AQ6PDA7 123 aa6.72□□□□□ -1.33
PTCH1-222ENST00000551425 HIST3H2BBQ8N257 126 aa6.72□□□□□ -1.33
PTCH1-222ENST00000551425 LINC00469Q8N7U9 141 aa6.72□□□□□ -1.33
PTCH1-222ENST00000551425 XAGE1AQ9HD64 81 aa6.72□□□□□ -1.33
PTCH1-222ENST00000551425 C5orf52A6NGY3 159 aa6.71□□□□□ -1.34
PTCH1-222ENST00000551425 F8VRH5 84 aa6.71□□□□□ -1.34
PTCH1-222ENST00000551425 H0Y8G0 127 aa6.71□□□□□ -1.34
PTCH1-222ENST00000551425 IGLC3P0DOY3 106 aa6.71□□□□□ -1.34
PTCH1-222ENST00000551425 KRTAP10-6P60371 365 aaPredicted RBP6.71□□□□□ -1.34
PTCH1-222ENST00000551425 LINC01561Q8N1V8 128 aa6.71□□□□□ -1.34
PTCH1-222ENST00000551425 RPL37AP8A6NKH3 93 aa6.7□□□□□ -1.34
PTCH1-222ENST00000551425 UBE2AP49459 152 aa6.7□□□□□ -1.34
PTCH1-222ENST00000551425 LINC00167Q96N53 147 aa6.7□□□□□ -1.34
PTCH1-222ENST00000551425 H3BRM9 83 aa6.69□□□□□ -1.34
PTCH1-222ENST00000551425 SYS1-DBNDD2H3BUS1 97 aa6.69□□□□□ -1.34
PTCH1-222ENST00000551425 PET117Q6UWS5 81 aa6.69□□□□□ -1.34
PTCH1-222ENST00000551425 HIST1H2BLQ99880 126 aa6.69□□□□□ -1.34
PTCH1-222ENST00000551425 CDKN2A-AS1Q9UH64 79 aa6.69□□□□□ -1.34
PTCH1-222ENST00000551425 IGLV5-45A0A087WSX0 123 aa6.68□□□□□ -1.34
PTCH1-222ENST00000551425 C3orf79P0CE67 100 aa6.68□□□□□ -1.34
PTCH1-222ENST00000551425 KRTDAPP60985 99 aa6.68□□□□□ -1.34
PTCH1-222ENST00000551425 C3orf22Q8N5N4 141 aa6.68□□□□□ -1.34
PTCH1-222ENST00000551425 TMA7Q9Y2S6 64 aaKnown RBP6.68□□□□□ -1.34
PTCH1-222ENST00000551425 C11orf86A6NJI1 115 aa6.67□□□□□ -1.34
PTCH1-222ENST00000551425 ZNF22P17026 224 aaPredicted RBP6.67□□□□□ -1.34
PTCH1-222ENST00000551425 PLNP26678 52 aa6.67□□□□□ -1.34
PTCH1-222ENST00000551425 TMEM170BQ5T4T1 132 aa6.67□□□□□ -1.34
PTCH1-222ENST00000551425 C20orf202A1L168 122 aa6.66□□□□□ -1.34
PTCH1-222ENST00000551425 DPM2O94777 84 aa6.66□□□□□ -1.34
PTCH1-222ENST00000551425 IGKCP01834 107 aa6.66□□□□□ -1.34
PTCH1-222ENST00000551425 CKS1BP61024 79 aa6.66□□□□□ -1.34
PTCH1-222ENST00000551425 LINC01545Q5VT33 79 aa6.66□□□□□ -1.34
PTCH1-222ENST00000551425 PRSS2P07478 247 aa6.65□□□□□ -1.34
PTCH1-222ENST00000551425 AKR1D1P51857 326 aa6.65□□□□□ -1.34
PTCH1-222ENST00000551425 XP32Q5T750 250 aa6.65□□□□□ -1.34
PTCH1-222ENST00000551425 GAGE10A6NGK3 116 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 SMIM1B2RUZ4 78 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 SPINK8P0C7L1 97 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 C4orf48Q5BLP8 95 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 PMCHL2Q9BQD1 86 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 TOMM7Q9P0U1 55 aa6.64□□□□□ -1.35
PTCH1-222ENST00000551425 IGLV5-37A0A075B6J1 123 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 TMEM223A0PJW6 202 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 HERVK_113P61574 105 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 C6orf226Q5I0X4 101 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 Q8IZM0 81 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 DAND5Q8N907 189 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 PLEKHB2Q96CS7 222 aa6.63□□□□□ -1.35
PTCH1-222ENST00000551425 IGLV5-39A0A0G2JS06 123 aa6.62□□□□□ -1.35
PTCH1-222ENST00000551425 PRLHP81277 87 aa6.62□□□□□ -1.35
PTCH1-222ENST00000551425 COX7B2Q8TF08 81 aa6.62□□□□□ -1.35
PTCH1-222ENST00000551425 CXCL5P42830 114 aa6.61□□□□□ -1.35
PTCH1-222ENST00000551425 SPINK1P00995 79 aa6.6□□□□□ -1.35
PTCH1-222ENST00000551425 SCGB1D1O95968 90 aa6.59□□□□□ -1.35
PTCH1-222ENST00000551425 SFTA2Q6UW10 78 aa6.59□□□□□ -1.35
PTCH1-222ENST00000551425 NKAPP1Q8N9T2 125 aa6.59□□□□□ -1.35
PTCH1-222ENST00000551425 NDUFA12Q9UI09 145 aa6.59□□□□□ -1.35
PTCH1-222ENST00000551425 IGKV2-28A0A075B6P5 120 aa6.58□□□□□ -1.36
PTCH1-222ENST00000551425 LEPROTO15243 131 aa6.58□□□□□ -1.36
PTCH1-222ENST00000551425 IGKV2D-28P01615 120 aa6.58□□□□□ -1.36
PTCH1-222ENST00000551425 FAM19A1Q7Z5A9 133 aa6.58□□□□□ -1.36
PTCH1-222ENST00000551425 Q8NBF4 154 aa6.58□□□□□ -1.36
PTCH1-222ENST00000551425 E9PLD3 99 aa6.57□□□□□ -1.36
PTCH1-222ENST00000551425 M0R2T5 61 aa6.57□□□□□ -1.36
PTCH1-222ENST00000551425 ATOH7Q8N100 152 aa6.57□□□□□ -1.36
PTCH1-222ENST00000551425 TMEM126AQ9H061 195 aa6.57□□□□□ -1.36
PTCH1-222ENST00000551425 HSBP1L1C9JCN9 74 aa6.56□□□□□ -1.36
PTCH1-222ENST00000551425 J3QQQ9 107 aa6.56□□□□□ -1.36
PTCH1-222ENST00000551425 LGALS3P17931 250 aaKnown RBP6.56□□□□□ -1.36
PTCH1-222ENST00000551425 JOSD1Q15040 202 aaPredicted RBP6.56□□□□□ -1.36
PTCH1-222ENST00000551425 SPRR4Q96PI1 79 aa6.56□□□□□ -1.36
PTCH1-222ENST00000551425 MYMXA0A1B0GTQ4 84 aa6.55□□□□□ -1.36
PTCH1-222ENST00000551425 NMUP48645 174 aa6.55□□□□□ -1.36
PTCH1-222ENST00000551425 SSPOA2VEC9 5147 aa6.54□□□□□ -1.36
PTCH1-222ENST00000551425 IGLV8-61A0A075B6I0 122 aa6.54□□□□□ -1.36
Retrieved 100 of 20,778 RNA–protein pairs in 48.5 ms