RNA–Protein interactions for RNA: ENST00000549970.5

VPS29-207, Transcript of VPS29, retromer complex component, humanhuman

TSL 3 BASIC

Gene VPS29, Length 818 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-207ENST00000549970 Q8NDZ9 215 aa9.63□□□□□ -0.87
VPS29-207ENST00000549970 A0A0U1RRA0 63 aa9.62□□□□□ -0.87
VPS29-207ENST00000549970 TMEM223A0PJW6 202 aa9.62□□□□□ -0.87
VPS29-207ENST00000549970 LINC00158P58513 81 aa9.62□□□□□ -0.87
VPS29-207ENST00000549970 FAM19A1Q7Z5A9 133 aa9.62□□□□□ -0.87
VPS29-207ENST00000549970 TMEM126AQ9H061 195 aa9.62□□□□□ -0.87
VPS29-207ENST00000549970 TRAV12-1A0A0B4J245 112 aa9.61□□□□□ -0.87
VPS29-207ENST00000549970 CBLN2Q8IUK8 224 aa9.6□□□□□ -0.87
VPS29-207ENST00000549970 M0R378 163 aa9.59□□□□□ -0.87
VPS29-207ENST00000549970 HSBP1O75506 76 aa9.59□□□□□ -0.87
VPS29-207ENST00000549970 KRTAP13-2Q52LG2 175 aa9.59□□□□□ -0.87
VPS29-207ENST00000549970 FAM19A2Q8N3H0 131 aa9.59□□□□□ -0.87
VPS29-207ENST00000549970 H0Y8G0 127 aa9.57□□□□□ -0.88
VPS29-207ENST00000549970 FAM229BQ4G0N7 80 aa9.57□□□□□ -0.88
VPS29-207ENST00000549970 ATP6V1G1O75348 118 aa9.56□□□□□ -0.88
VPS29-207ENST00000549970 SMIM13P0DJ93 91 aa9.56□□□□□ -0.88
VPS29-207ENST00000549970 MEIG1Q5JSS6 88 aa9.56□□□□□ -0.88
VPS29-207ENST00000549970 TRGC2P03986 189 aa9.55□□□□□ -0.88
VPS29-207ENST00000549970 IGKV2D-26A0A0A0MRZ7 120 aa9.54□□□□□ -0.88
VPS29-207ENST00000549970 HIGD2AQ9BW72 106 aa9.54□□□□□ -0.88
VPS29-207ENST00000549970 BOD1L2Q8IYS8 172 aa9.53□□□□□ -0.88
VPS29-207ENST00000549970 MIR7-3HGQ8N6C7 128 aa9.53□□□□□ -0.88
VPS29-207ENST00000549970 LINC00304Q8N9R0 145 aa9.53□□□□□ -0.88
VPS29-207ENST00000549970 HERV-K104P63124 156 aa9.52□□□□□ -0.89
VPS29-207ENST00000549970 PLEKHB2Q96CS7 222 aa9.52□□□□□ -0.89
VPS29-207ENST00000549970 NDUFA12Q9UI09 145 aa9.52□□□□□ -0.89
VPS29-207ENST00000549970 NCR3O14931 201 aa9.51□□□□□ -0.89
VPS29-207ENST00000549970 SERF1AO75920 110 aa9.51□□□□□ -0.89
VPS29-207ENST00000549970 LEPROTL1O95214 131 aa9.51□□□□□ -0.89
VPS29-207ENST00000549970 MYMXA0A1B0GTQ4 84 aa9.5□□□□□ -0.89
VPS29-207ENST00000549970 LINC00310P59036 64 aa9.5□□□□□ -0.89
VPS29-207ENST00000549970 RETNLBQ9BQ08 111 aa9.5□□□□□ -0.89
VPS29-207ENST00000549970 LINC00587B1AMM8 73 aa9.49□□□□□ -0.89
VPS29-207ENST00000549970 TSPEAR-AS2P59090 65 aa9.49□□□□□ -0.89
VPS29-207ENST00000549970 PRYO14603 147 aa9.48□□□□□ -0.89
VPS29-207ENST00000549970 C3orf22Q8N5N4 141 aa9.48□□□□□ -0.89
VPS29-207ENST00000549970 MUC2Q02817 5179 aa9.48□□□□□ -0.89
VPS29-207ENST00000549970 FABP4P15090 132 aa9.47□□□□□ -0.89
VPS29-207ENST00000549970 MAP1LC3CQ9BXW4 147 aa9.47□□□□□ -0.89
VPS29-207ENST00000549970 LEPROTO15243 131 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 PLNP26678 52 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 SLC7A5P1Q8MH63 180 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 DAND5Q8N907 189 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 SPRR4Q96PI1 79 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 PMCHL2Q9BQD1 86 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 HSPB8Q9UJY1 196 aa9.46□□□□□ -0.9
VPS29-207ENST00000549970 KCNQ1DNQ9H478 68 aa9.45□□□□□ -0.9
VPS29-207ENST00000549970 TRBV10-3A0A0K0K1G6 114 aa9.44□□□□□ -0.9
VPS29-207ENST00000549970 DPM2O94777 84 aa9.44□□□□□ -0.9
VPS29-207ENST00000549970 LINC00337Q8N6G1 96 aa9.44□□□□□ -0.9
VPS29-207ENST00000549970 ETDCA0A1B0GVM5 59 aa9.43□□□□□ -0.9
VPS29-207ENST00000549970 J3QQQ9 107 aa9.43□□□□□ -0.9
VPS29-207ENST00000549970 SPRR1AP35321 89 aa9.43□□□□□ -0.9
VPS29-207ENST00000549970 HERVK_113P61574 105 aa9.43□□□□□ -0.9
VPS29-207ENST00000549970 ZNF706Q9Y5V0 76 aaPredicted RBP9.43□□□□□ -0.9
VPS29-207ENST00000549970 COLCA2A8K830 154 aa9.42□□□□□ -0.9
VPS29-207ENST00000549970 IGKCP01834 107 aa9.42□□□□□ -0.9
VPS29-207ENST00000549970 KRTAP4-16G5E9R7 235 aaPredicted RBP9.41□□□□□ -0.9
VPS29-207ENST00000549970 LGALS3P17931 250 aaKnown RBP9.41□□□□□ -0.9
VPS29-207ENST00000549970 SMCR5Q8TEV8 140 aa9.41□□□□□ -0.9
VPS29-207ENST00000549970 S100A12P80511 92 aa9.4□□□□□ -0.9
VPS29-207ENST00000549970 PPDPFQ9H3Y8 114 aa9.4□□□□□ -0.9
VPS29-207ENST00000549970 LOC107984156A0A0G2JMH3 177 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 DDTP30046 118 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 NMUP48645 174 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 CTAG1AP78358 180 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 ARL17AQ8IVW1 177 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 MIEN1Q9BRT3 115 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 MUC17Q685J3 4493 aa9.39□□□□□ -0.91
VPS29-207ENST00000549970 IGLV7-46A0A075B6I9 117 aa9.38□□□□□ -0.91
VPS29-207ENST00000549970 KRTAP3-3Q9BYR6 98 aa9.38□□□□□ -0.91
VPS29-207ENST00000549970 KRTAP3-2Q9BYR7 98 aa9.38□□□□□ -0.91
VPS29-207ENST00000549970 TRBV10-2A0A0K0K1G8 114 aa9.37□□□□□ -0.91
VPS29-207ENST00000549970 SPAG11AQ6PDA7 123 aa9.37□□□□□ -0.91
VPS29-207ENST00000549970 SPANXB1Q9NS25 103 aaPredicted RBP9.37□□□□□ -0.91
VPS29-207ENST00000549970 B5MCH6 92 aa9.36□□□□□ -0.91
VPS29-207ENST00000549970 C4orf48Q5BLP8 95 aa9.36□□□□□ -0.91
VPS29-207ENST00000549970 Q8NBF4 154 aa9.36□□□□□ -0.91
VPS29-207ENST00000549970 CDIP1Q9H305 208 aa9.36□□□□□ -0.91
VPS29-207ENST00000549970 NPC2P61916 151 aa9.35□□□□□ -0.91
VPS29-207ENST00000549970 TPRXLQ17RH7 258 aa9.35□□□□□ -0.91
VPS29-207ENST00000549970 GAGE2AQ6NT46 116 aa9.35□□□□□ -0.91
VPS29-207ENST00000549970 ERC2-IT1O76042 136 aa9.34□□□□□ -0.91
VPS29-207ENST00000549970 S100A7L2Q5SY68 101 aa9.34□□□□□ -0.91
VPS29-207ENST00000549970 A0A0J9YXY3 114 aa9.33□□□□□ -0.92
VPS29-207ENST00000549970 NDUFC2O95298 119 aa9.33□□□□□ -0.92
VPS29-207ENST00000549970 LINC00483Q53H64 154 aa9.33□□□□□ -0.92
VPS29-207ENST00000549970 SOSTDC1Q6X4U4 206 aa9.33□□□□□ -0.92
VPS29-207ENST00000549970 A0A0U1RQV1 116 aa9.32□□□□□ -0.92
VPS29-207ENST00000549970 E9PLD3 99 aa9.32□□□□□ -0.92
VPS29-207ENST00000549970 ADAMTSL4-AS1Q5T5F5 129 aa9.32□□□□□ -0.92
VPS29-207ENST00000549970 Q9BRP9 147 aa9.32□□□□□ -0.92
VPS29-207ENST00000549970 SYS1-DBNDD2H3BUS1 97 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 EIF4EBP3O60516 100 aaPredicted RBP9.31□□□□□ -0.92
VPS29-207ENST00000549970 HIST1H2BKO60814 126 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 IGLV6-57P01721 117 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 HIST1H2BJP06899 126 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 HIST1H2BOP23527 126 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 HIST1H2BBP33778 126 aa9.31□□□□□ -0.92
VPS29-207ENST00000549970 HIST1H2BDP58876 126 aa9.31□□□□□ -0.92
Retrieved 100 of 20,778 RNA–protein pairs in 54.9 ms