RNA–Protein interactions for RNA: ENST00000549578.5

VPS29-206, Transcript of VPS29, retromer complex component, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene VPS29, Length 1,523 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS29-206ENST00000549578 LITAFQ99732 161 aa13.33□□□□□ -0.28
VPS29-206ENST00000549578 EPM2AB3EWF7 344 aa13.32□□□□□ -0.28
VPS29-206ENST00000549578 LOC105371267A0A1B0GV96 52 aa13.31□□□□□ -0.28
VPS29-206ENST00000549578 TIMM17BO60830 172 aa13.31□□□□□ -0.28
VPS29-206ENST00000549578 COX8AP10176 69 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 C14orf144Q96I85 54 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 M0QXV9 152 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 NPC2P61916 151 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 PHF5AQ7RTV0 110 aaKnown RBP13.29□□□□□ -0.28
VPS29-206ENST00000549578 Q8NDZ9 215 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 PLA2G2DQ9UNK4 145 aa13.29□□□□□ -0.28
VPS29-206ENST00000549578 BOD1L2Q8IYS8 172 aa13.28□□□□□ -0.28
VPS29-206ENST00000549578 KRTAP17-1Q9BYP8 105 aa13.27□□□□□ -0.29
VPS29-206ENST00000549578 FAT1Q14517 4588 aa13.27□□□□□ -0.29
VPS29-206ENST00000549578 TMEM238C9JI98 176 aa13.26□□□□□ -0.29
VPS29-206ENST00000549578 EIF4EBP3O60516 100 aaPredicted RBP13.26□□□□□ -0.29
VPS29-206ENST00000549578 SOSTDC1Q6X4U4 206 aa13.26□□□□□ -0.29
VPS29-206ENST00000549578 LINC00528Q8N1L1 170 aa13.26□□□□□ -0.29
VPS29-206ENST00000549578 C22orf24Q9Y442 160 aa13.26□□□□□ -0.29
VPS29-206ENST00000549578 VPREB1P12018 145 aa13.25□□□□□ -0.29
VPS29-206ENST00000549578 MIEN1Q9BRT3 115 aa13.25□□□□□ -0.29
VPS29-206ENST00000549578 KRTAP3-3Q9BYR6 98 aa13.24□□□□□ -0.29
VPS29-206ENST00000549578 KRTAP3-2Q9BYR7 98 aa13.24□□□□□ -0.29
VPS29-206ENST00000549578 IGLV5-37A0A075B6J1 123 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 RPL24P83731 157 aaKnown RBP13.23□□□□□ -0.29
VPS29-206ENST00000549578 NKAPP1Q8N9T2 125 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 LOC107984156A0A0G2JMH3 177 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 DLEU1O43261 78 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 ARL17AQ8IVW1 177 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 LINC00308Q8TCZ7 52 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 C7orf33Q8WU49 177 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 SPANXDQ9BXN6 97 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 SPANXCQ9NY87 97 aa13.23□□□□□ -0.29
VPS29-206ENST00000549578 HERC2O95714 4834 aa13.22□□□□□ -0.29
VPS29-206ENST00000549578 SMIM6P0DI80 62 aa13.22□□□□□ -0.29
VPS29-206ENST00000549578 S100A12P80511 92 aa13.22□□□□□ -0.29
VPS29-206ENST00000549578 PRR3P79522 188 aaKnown RBP13.21□□□□□ -0.29
VPS29-206ENST00000549578 SLC25A34Q6PIV7 304 aa13.21□□□□□ -0.29
VPS29-206ENST00000549578 MRPL55Q7Z7F7 128 aaKnown RBP13.21□□□□□ -0.29
VPS29-206ENST00000549578 GAGE10A6NGK3 116 aa13.2□□□□□ -0.3
VPS29-206ENST00000549578 Q8N1X5 172 aa13.2□□□□□ -0.3
VPS29-206ENST00000549578 KRTAP11-1Q8IUC1 163 aa13.19□□□□□ -0.3
VPS29-206ENST00000549578 NCR3O14931 201 aa13.18□□□□□ -0.3
VPS29-206ENST00000549578 UBE2BP63146 152 aa13.18□□□□□ -0.3
VPS29-206ENST00000549578 LBHQ53QV2 105 aaPredicted RBP13.18□□□□□ -0.3
VPS29-206ENST00000549578 LINC00167Q96N53 147 aa13.18□□□□□ -0.3
VPS29-206ENST00000549578 FAM229AH3BQW9 127 aa13.18□□□□□ -0.3
VPS29-206ENST00000549578 Q5VSD8 79 aa13.18□□□□□ -0.3
VPS29-206ENST00000549578 SPANXB1Q9NS25 103 aaPredicted RBP13.18□□□□□ -0.3
VPS29-206ENST00000549578 Q6ZVH6 145 aa13.17□□□□□ -0.3
VPS29-206ENST00000549578 RPL37AP8A6NKH3 93 aa13.16□□□□□ -0.3
VPS29-206ENST00000549578 SRSF9Q13242 221 aaKnown RBP eCLIP13.16□□□□□ -0.3
VPS29-206ENST00000549578 VPS13BQ7Z7G8 4022 aa13.15□□□□□ -0.3
VPS29-206ENST00000549578 IFITM1P13164 125 aa13.15□□□□□ -0.3
VPS29-206ENST00000549578 RPL37AP61513 92 aaKnown RBP13.15□□□□□ -0.3
VPS29-206ENST00000549578 C2orf91Q6ZV80 131 aa13.15□□□□□ -0.3
VPS29-206ENST00000549578 MUSTN1Q8IVN3 82 aa13.15□□□□□ -0.3
VPS29-206ENST00000549578 NDUFC2O95298 119 aa13.14□□□□□ -0.31
VPS29-206ENST00000549578 M0R378 163 aa13.13□□□□□ -0.31
VPS29-206ENST00000549578 PSORS1C2Q9UIG4 136 aa13.13□□□□□ -0.31
VPS29-206ENST00000549578 IGKV2-28A0A075B6P5 120 aa13.13□□□□□ -0.31
VPS29-206ENST00000549578 IGKV2D-28P01615 120 aa13.13□□□□□ -0.31
VPS29-206ENST00000549578 COPS9Q8WXC6 57 aa13.13□□□□□ -0.31
VPS29-206ENST00000549578 HIGD1BQ9P298 99 aa13.12□□□□□ -0.31
VPS29-206ENST00000549578 HIST1H4GQ99525 98 aa13.11□□□□□ -0.31
VPS29-206ENST00000549578 PLA2G1BP04054 148 aaKnown RBP13.1□□□□□ -0.31
VPS29-206ENST00000549578 KRTAP10-4P60372 401 aaPredicted RBP13.1□□□□□ -0.31
VPS29-206ENST00000549578 IGLV1-50A0A075B6I6 118 aa13.09□□□□□ -0.31
VPS29-206ENST00000549578 TRBV10-2A0A0K0K1G8 114 aa13.09□□□□□ -0.31
VPS29-206ENST00000549578 PRO1933Q9H354 126 aa13.09□□□□□ -0.31
VPS29-206ENST00000549578 PPDPFQ9H3Y8 114 aa13.09□□□□□ -0.31
VPS29-206ENST00000549578 UQCR10Q9UDW1 63 aa13.09□□□□□ -0.31
VPS29-206ENST00000549578 C12orf57Q99622 126 aa13.08□□□□□ -0.31
VPS29-206ENST00000549578 KRTAP4-5Q9BYR2 181 aa13.08□□□□□ -0.31
VPS29-206ENST00000549578 C1orf137Q5JT78 98 aa13.08□□□□□ -0.32
VPS29-206ENST00000549578 SRRM2Q9UQ35 2752 aaKnown RBP13.08□□□□□ -0.32
VPS29-206ENST00000549578 TRBV10-3A0A0K0K1G6 114 aa13.07□□□□□ -0.32
VPS29-206ENST00000549578 DDTP30046 118 aa13.05□□□□□ -0.32
VPS29-206ENST00000549578 S100A7L2Q5SY68 101 aa13.04□□□□□ -0.32
VPS29-206ENST00000549578 A4D1N5 150 aa13.03□□□□□ -0.32
VPS29-206ENST00000549578 LINC00337Q8N6G1 96 aa13.03□□□□□ -0.32
VPS29-206ENST00000549578 IGLV6-57P01721 117 aa13.03□□□□□ -0.32
VPS29-206ENST00000549578 LINC00518Q8N0U6 118 aa13.03□□□□□ -0.32
VPS29-206ENST00000549578 OR13C6PQ8NH95 151 aa13.02□□□□□ -0.33
VPS29-206ENST00000549578 TMEM126AQ9H061 195 aa13.02□□□□□ -0.33
VPS29-206ENST00000549578 HNRNPA3P51991 378 aaKnown RBP13.01□□□□□ -0.33
VPS29-206ENST00000549578 REG3GQ6UW15 175 aa13.01□□□□□ -0.33
VPS29-206ENST00000549578 TAL2Q16559 108 aa13□□□□□ -0.33
VPS29-206ENST00000549578 KCNQ1DNQ9H478 68 aa13□□□□□ -0.33
VPS29-206ENST00000549578 PRYO14603 147 aa12.99□□□□□ -0.33
VPS29-206ENST00000549578 BCE1O60756 84 aa12.99□□□□□ -0.33
VPS29-206ENST00000549578 IGLV7-43P04211 117 aa12.98□□□□□ -0.33
VPS29-206ENST00000549578 CEND1Q8N111 149 aa12.98□□□□□ -0.33
VPS29-206ENST00000549578 A6NDN8 102 aa12.97□□□□□ -0.33
VPS29-206ENST00000549578 HSD52Q0P140 79 aa12.97□□□□□ -0.33
VPS29-206ENST00000549578 TRAV23DV6A0A075B6W5 121 aa12.96□□□□□ -0.33
VPS29-206ENST00000549578 ABCA13Q86UQ4 5058 aa12.96□□□□□ -0.34
VPS29-206ENST00000549578 TRAV13-2A0A0B4J235 113 aa12.94□□□□□ -0.34
VPS29-206ENST00000549578 TSTD3H0UI37 97 aa12.94□□□□□ -0.34
VPS29-206ENST00000549578 SPRR1AP35321 89 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 68.6 ms