RNA–Protein interactions for RNA: ENST00000549547.1

PRPF40B-210, Transcript of pre-mRNA processing factor 40 homolog B, humanhuman

TSL 5

Gene PRPF40B, Length 697 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PRPF40B-210ENST00000549547 TMEM238LA0A1B0GVL6 79 aa8.11□□□□□ -1.11
PRPF40B-210ENST00000549547 FAM19A5Q7Z5A7 132 aaPredicted RBP8.11□□□□□ -1.11
PRPF40B-210ENST00000549547 ATOH7Q8N100 152 aa8.1□□□□□ -1.11
PRPF40B-210ENST00000549547 FAM168BA1KXE4 195 aa8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 DPM2O94777 84 aa8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 IGKCP01834 107 aa8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 C9orf129Q5T035 196 aaKnown RBP8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 PHF5AQ7RTV0 110 aaKnown RBP8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 DMBT1Q9UGM3 2413 aaPredicted RBP8.09□□□□□ -1.11
PRPF40B-210ENST00000549547 TMEM223A0PJW6 202 aa8.08□□□□□ -1.12
PRPF40B-210ENST00000549547 KRTAP29-1A8MX34 341 aaPredicted RBP8.08□□□□□ -1.12
PRPF40B-210ENST00000549547 M0QXV9 152 aa8.08□□□□□ -1.12
PRPF40B-210ENST00000549547 PLNP26678 52 aa8.08□□□□□ -1.12
PRPF40B-210ENST00000549547 FAT3Q8TDW7 4589 aa8.08□□□□□ -1.12
PRPF40B-210ENST00000549547 J3QL48 77 aa8.07□□□□□ -1.12
PRPF40B-210ENST00000549547 OXTP01178 125 aa8.07□□□□□ -1.12
PRPF40B-210ENST00000549547 HNRNPA3P51991 378 aaKnown RBP8.07□□□□□ -1.12
PRPF40B-210ENST00000549547 COX17Q14061 63 aa8.07□□□□□ -1.12
PRPF40B-210ENST00000549547 XAGE1AQ9HD64 81 aa8.07□□□□□ -1.12
PRPF40B-210ENST00000549547 UBE2BP63146 152 aa8.06□□□□□ -1.12
PRPF40B-210ENST00000549547 VAMP8Q9BV40 100 aa8.06□□□□□ -1.12
PRPF40B-210ENST00000549547 ERG28Q9UKR5 140 aa8.06□□□□□ -1.12
PRPF40B-210ENST00000549547 PSORS1C2Q9UIG4 136 aa8.05□□□□□ -1.12
PRPF40B-210ENST00000549547 PFN2P35080 140 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 HERVK_113P61574 105 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 UBE2V1Q13404 147 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 SPINK6Q6UWN8 80 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 KRTAP7-1Q8IUC3 87 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 ZNF625Q96I27 306 aaPredicted RBP8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 UQCR10Q9UDW1 63 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 TP73-AS1Q9UF72 201 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 PLA2G2DQ9UNK4 145 aa8.04□□□□□ -1.12
PRPF40B-210ENST00000549547 LRP1Q07954 4544 aaKnown RBP8.03□□□□□ -1.12
PRPF40B-210ENST00000549547 C1orf137Q5JT78 98 aa8.03□□□□□ -1.12
PRPF40B-210ENST00000549547 SERTAD4-AS1Q5TG53 156 aa8.03□□□□□ -1.12
PRPF40B-210ENST00000549547 C22orf24Q9Y442 160 aa8.03□□□□□ -1.12
PRPF40B-210ENST00000549547 HERV-K104P63124 156 aa8.02□□□□□ -1.13
PRPF40B-210ENST00000549547 PAM16Q9Y3D7 125 aa8.02□□□□□ -1.13
PRPF40B-210ENST00000549547 IGKV2D-26A0A0A0MRZ7 120 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 K7ERU9 68 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 SPATA45Q537H7 98 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 REG3GQ6UW15 175 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 MRPL55Q7Z7F7 128 aaKnown RBP8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 NKAPP1Q8N9T2 125 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 PLEKHB2Q96CS7 222 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 HERC1Q15751 4861 aa8.01□□□□□ -1.13
PRPF40B-210ENST00000549547 IGLV5-37A0A075B6J1 123 aa8□□□□□ -1.13
PRPF40B-210ENST00000549547 MYMXA0A1B0GTQ4 84 aa8□□□□□ -1.13
PRPF40B-210ENST00000549547 E9PLD3 99 aa8□□□□□ -1.13
PRPF40B-210ENST00000549547 LEPROTO15243 131 aa8□□□□□ -1.13
PRPF40B-210ENST00000549547 SND1-IT1Q9HBX3 110 aa8□□□□□ -1.13
PRPF40B-210ENST00000549547 IGLV7-43P04211 117 aa7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 LINC00158P58513 81 aa7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 RPL24P83731 157 aaKnown RBP7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 SRSF9Q13242 221 aaKnown RBP eCLIP7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 MEIG1Q5JSS6 88 aa7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 NDUFA12Q9UI09 145 aa7.99□□□□□ -1.13
PRPF40B-210ENST00000549547 NMUP48645 174 aa7.98□□□□□ -1.13
PRPF40B-210ENST00000549547 VPS25Q9BRG1 176 aa7.98□□□□□ -1.13
PRPF40B-210ENST00000549547 J3QQQ9 107 aa7.97□□□□□ -1.13
PRPF40B-210ENST00000549547 LGALS3P17931 250 aaKnown RBP7.97□□□□□ -1.13
PRPF40B-210ENST00000549547 TSPEAR-AS2P59090 65 aa7.97□□□□□ -1.13
PRPF40B-210ENST00000549547 KRTAP11-1Q8IUC1 163 aa7.97□□□□□ -1.13
PRPF40B-210ENST00000549547 DIRC1Q969H9 104 aa7.97□□□□□ -1.13
PRPF40B-210ENST00000549547 SCGB1A1P11684 91 aa7.96□□□□□ -1.14
PRPF40B-210ENST00000549547 PCP2Q8IVA1 136 aa7.96□□□□□ -1.14
PRPF40B-210ENST00000549547 LINC00167Q96N53 147 aa7.96□□□□□ -1.14
PRPF40B-210ENST00000549547 TTTY13Q9BZ97 58 aa7.96□□□□□ -1.14
PRPF40B-210ENST00000549547 A0A0U1RRA0 63 aa7.95□□□□□ -1.14
PRPF40B-210ENST00000549547 SMIM13P0DJ93 91 aa7.95□□□□□ -1.14
PRPF40B-210ENST00000549547 COX8AP10176 69 aa7.95□□□□□ -1.14
PRPF40B-210ENST00000549547 BATFQ16520 125 aa7.95□□□□□ -1.14
PRPF40B-210ENST00000549547 VPREB1P12018 145 aa7.94□□□□□ -1.14
PRPF40B-210ENST00000549547 LINC01600Q96MT4 127 aa7.94□□□□□ -1.14
PRPF40B-210ENST00000549547 GAGE10A6NGK3 116 aa7.93□□□□□ -1.14
PRPF40B-210ENST00000549547 RPL37AP8A6NKH3 93 aa7.93□□□□□ -1.14
PRPF40B-210ENST00000549547 BOD1L2Q8IYS8 172 aa7.93□□□□□ -1.14
PRPF40B-210ENST00000549547 MIR7-3HGQ8N6C7 128 aa7.93□□□□□ -1.14
PRPF40B-210ENST00000549547 TMEM238C9JI98 176 aa7.92□□□□□ -1.14
PRPF40B-210ENST00000549547 H0Y9J4 135 aa7.92□□□□□ -1.14
PRPF40B-210ENST00000549547 BCE1O60756 84 aa7.92□□□□□ -1.14
PRPF40B-210ENST00000549547 TNXBP22105 4242 aa7.92□□□□□ -1.14
PRPF40B-210ENST00000549547 ZNF861PO60384 105 aa7.91□□□□□ -1.14
PRPF40B-210ENST00000549547 RPL28P46779 137 aaKnown RBP7.91□□□□□ -1.14
PRPF40B-210ENST00000549547 OCIAD2Q56VL3 154 aa7.91□□□□□ -1.14
PRPF40B-210ENST00000549547 SLC25A34Q6PIV7 304 aa7.91□□□□□ -1.14
PRPF40B-210ENST00000549547 IGKV2-28A0A075B6P5 120 aa7.9□□□□□ -1.14
PRPF40B-210ENST00000549547 IGKV2D-28P01615 120 aa7.9□□□□□ -1.14
PRPF40B-210ENST00000549547 VAMP3Q15836 100 aa7.9□□□□□ -1.14
PRPF40B-210ENST00000549547 IGLV1-50A0A075B6I6 118 aa7.89□□□□□ -1.15
PRPF40B-210ENST00000549547 ZNF815PA8K554 130 aa7.89□□□□□ -1.15
PRPF40B-210ENST00000549547 M0R378 163 aa7.89□□□□□ -1.15
PRPF40B-210ENST00000549547 MT1HL1P0DM35 61 aa7.89□□□□□ -1.15
PRPF40B-210ENST00000549547 C2orf91Q6ZV80 131 aa7.89□□□□□ -1.15
PRPF40B-210ENST00000549547 MTURNQ8N3F0 131 aa7.88□□□□□ -1.15
PRPF40B-210ENST00000549547 LOC107984156A0A0G2JMH3 177 aa7.87□□□□□ -1.15
PRPF40B-210ENST00000549547 A0A0J9YXY3 114 aa7.87□□□□□ -1.15
PRPF40B-210ENST00000549547 UBE2AP49459 152 aa7.87□□□□□ -1.15
PRPF40B-210ENST00000549547 GTF2H5Q6ZYL4 71 aa7.87□□□□□ -1.15
PRPF40B-210ENST00000549547 ARL17AQ8IVW1 177 aa7.87□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 45.2 ms