RNA–Protein interactions for RNA: ENST00000547637.1

SMARCD1-204, Transcript of SWI/SNF related, matrix associated, actin dependent regulator of chromatin, subfamily d, member 1, human

TSL 2

Gene SMARCD1, Length 587 nt, Biotype retained intron, Subcellular localisation Cytosol .

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
SMARCD1-204	ENST00000547637	HBD	P02042	147 aa		13.29	□□□□□ -0.28
SMARCD1-204	ENST00000547637	LINC00614	P0C842	121 aa		13.29	□□□□□ -0.28
SMARCD1-204	ENST00000547637	LINC00158	P58513	81 aa		13.29	□□□□□ -0.28
SMARCD1-204	ENST00000547637	LCE2A	Q5TA79	106 aa	Predicted RBP	13.29	□□□□□ -0.28
SMARCD1-204	ENST00000547637	BAGE3	Q86Y29	109 aa		13.28	□□□□□ -0.28
SMARCD1-204	ENST00000547637	ATP6V1G1	O75348	118 aa		13.27	□□□□□ -0.29
SMARCD1-204	ENST00000547637	C3orf22	Q8N5N4	141 aa		13.27	□□□□□ -0.29
SMARCD1-204	ENST00000547637	FP248	Q71RG6	208 aa	Predicted RBP	13.25	□□□□□ -0.29
SMARCD1-204	ENST00000547637	LINC00337	Q8N6G1	96 aa		13.25	□□□□□ -0.29
SMARCD1-204	ENST00000547637	TRAPPC1	Q9Y5R8	145 aa		13.24	□□□□□ -0.29
SMARCD1-204	ENST00000547637	SPRR4	Q96PI1	79 aa		13.23	□□□□□ -0.29
SMARCD1-204	ENST00000547637		A0A096LNJ9	63 aa		13.22	□□□□□ -0.29
SMARCD1-204	ENST00000547637	C11orf86	A6NJI1	115 aa		13.22	□□□□□ -0.29
SMARCD1-204	ENST00000547637	RHEB	Q15382	184 aa		13.22	□□□□□ -0.29
SMARCD1-204	ENST00000547637	RPS10P5	Q9NQ39	176 aa		13.22	□□□□□ -0.29
SMARCD1-204	ENST00000547637	C18orf32	Q8TCD1	76 aa		13.21	□□□□□ -0.29
SMARCD1-204	ENST00000547637	CHTOP	Q9Y3Y2	248 aa	Known RBP	13.2	□□□□□ -0.3
SMARCD1-204	ENST00000547637		A0A0U1RRA0	63 aa		13.19	□□□□□ -0.3
SMARCD1-204	ENST00000547637	S100A12	P80511	92 aa		13.19	□□□□□ -0.3
SMARCD1-204	ENST00000547637		Q8NDZ9	215 aa		13.19	□□□□□ -0.3
SMARCD1-204	ENST00000547637	PRY	O14603	147 aa		13.18	□□□□□ -0.3
SMARCD1-204	ENST00000547637	PMCHL1	Q16048	86 aa		13.18	□□□□□ -0.3
SMARCD1-204	ENST00000547637	LINC00587	B1AMM8	73 aa		13.17	□□□□□ -0.3
SMARCD1-204	ENST00000547637	URB1-AS1	Q96HZ7	61 aa		13.17	□□□□□ -0.3
SMARCD1-204	ENST00000547637	FAT4	Q6V0I7	4981 aa		13.17	□□□□□ -0.3
SMARCD1-204	ENST00000547637	MEIG1	Q5JSS6	88 aa		13.16	□□□□□ -0.3
SMARCD1-204	ENST00000547637	ETDC	A0A1B0GVM5	59 aa		13.15	□□□□□ -0.3
SMARCD1-204	ENST00000547637	BOD1L2	Q8IYS8	172 aa		13.15	□□□□□ -0.3
SMARCD1-204	ENST00000547637	SPINK1	P00995	79 aa		13.14	□□□□□ -0.31
SMARCD1-204	ENST00000547637		Q8NBF4	154 aa		13.14	□□□□□ -0.31
SMARCD1-204	ENST00000547637	TMEM223	A0PJW6	202 aa		13.13	□□□□□ -0.31
SMARCD1-204	ENST00000547637	HERV-K104	P63124	156 aa		13.13	□□□□□ -0.31
SMARCD1-204	ENST00000547637	COMMD7	Q86VX2	200 aa		13.13	□□□□□ -0.31
SMARCD1-204	ENST00000547637	SMCR5	Q8TEV8	140 aa		13.13	□□□□□ -0.31
SMARCD1-204	ENST00000547637	SMIM13	P0DJ93	91 aa		13.12	□□□□□ -0.31
SMARCD1-204	ENST00000547637	KCNQ1DN	Q9H478	68 aa		13.12	□□□□□ -0.31
SMARCD1-204	ENST00000547637	NDUFA12	Q9UI09	145 aa		13.12	□□□□□ -0.31
SMARCD1-204	ENST00000547637	TRAV12-1	A0A0B4J245	112 aa		13.11	□□□□□ -0.31
SMARCD1-204	ENST00000547637	C10orf91	Q5T1B1	145 aa		13.11	□□□□□ -0.31
SMARCD1-204	ENST00000547637	DAND5	Q8N907	189 aa		13.11	□□□□□ -0.31
SMARCD1-204	ENST00000547637	MAP1LC3C	Q9BXW4	147 aa		13.11	□□□□□ -0.31
SMARCD1-204	ENST00000547637	MUC17	Q685J3	4493 aa		13.11	□□□□□ -0.31
SMARCD1-204	ENST00000547637	NCR3	O14931	201 aa		13.09	□□□□□ -0.31
SMARCD1-204	ENST00000547637	SPRR1A	P35321	89 aa		13.09	□□□□□ -0.31
SMARCD1-204	ENST00000547637	MIR7-3HG	Q8N6C7	128 aa		13.09	□□□□□ -0.31
SMARCD1-204	ENST00000547637	IFI27L1	Q96BM0	104 aa		13.09	□□□□□ -0.31
SMARCD1-204	ENST00000547637	FAM19A2	Q8N3H0	131 aa		13.07	□□□□□ -0.32
SMARCD1-204	ENST00000547637	SEC61B	P60468	96 aa	Known RBP	13.06	□□□□□ -0.32
SMARCD1-204	ENST00000547637	IFITM2	Q01629	132 aa		13.06	□□□□□ -0.32
SMARCD1-204	ENST00000547637	KRTAP13-3	Q3SY46	172 aa		13.06	□□□□□ -0.32
SMARCD1-204	ENST00000547637	CHCHD1	Q96BP2	118 aa	Known RBP	13.06	□□□□□ -0.32
SMARCD1-204	ENST00000547637	KRTAP9-6	A0A140TA67	174 aa		13.05	□□□□□ -0.32
SMARCD1-204	ENST00000547637	MYMX	A0A1B0GTQ4	84 aa		13.05	□□□□□ -0.32
SMARCD1-204	ENST00000547637	LINC01547	P58512	204 aa	Predicted RBP	13.05	□□□□□ -0.32
SMARCD1-204	ENST00000547637	ASB16-AS1	Q495Z4	193 aa		13.05	□□□□□ -0.32
SMARCD1-204	ENST00000547637	GAGE2A	Q6NT46	116 aa		13.05	□□□□□ -0.32
SMARCD1-204	ENST00000547637	SSBP3-AS1	Q7Z2R9	100 aa		13.04	□□□□□ -0.32
SMARCD1-204	ENST00000547637	TRBV10-3	A0A0K0K1G6	114 aa		13.03	□□□□□ -0.32
SMARCD1-204	ENST00000547637	LINC00483	Q53H64	154 aa		13.03	□□□□□ -0.32
SMARCD1-204	ENST00000547637	RPS29	P62273	56 aa	Known RBP	13.02	□□□□□ -0.33
SMARCD1-204	ENST00000547637	KRTAP4-16	G5E9R7	235 aa	Predicted RBP	13.01	□□□□□ -0.33
SMARCD1-204	ENST00000547637	IGLV9-49	A0A0B4J1Y8	123 aa		13	□□□□□ -0.33
SMARCD1-204	ENST00000547637	NDUFA5	Q16718	116 aa		13	□□□□□ -0.33
SMARCD1-204	ENST00000547637	SNAPIN	O95295	136 aa		12.99	□□□□□ -0.33
SMARCD1-204	ENST00000547637	MOBP	Q13875	183 aa		12.99	□□□□□ -0.33
SMARCD1-204	ENST00000547637	SLC25A20	O43772	301 aa		12.98	□□□□□ -0.33
SMARCD1-204	ENST00000547637		B5MCH6	92 aa		12.97	□□□□□ -0.33
SMARCD1-204	ENST00000547637	APOC3	P02656	99 aa		12.97	□□□□□ -0.33
SMARCD1-204	ENST00000547637	DDT	P30046	118 aa		12.97	□□□□□ -0.33
SMARCD1-204	ENST00000547637	MIEN1	Q9BRT3	115 aa		12.97	□□□□□ -0.33
SMARCD1-204	ENST00000547637	TRBV10-2	A0A0K0K1G8	114 aa		12.96	□□□□□ -0.33
SMARCD1-204	ENST00000547637	HSBP1	O75506	76 aa		12.96	□□□□□ -0.33
SMARCD1-204	ENST00000547637	SVBP	Q8N300	66 aa		12.96	□□□□□ -0.33
SMARCD1-204	ENST00000547637	JOSD1	Q15040	202 aa	Predicted RBP	12.94	□□□□□ -0.34
SMARCD1-204	ENST00000547637	LOC107984156	A0A0G2JMH3	177 aa		12.93	□□□□□ -0.34
SMARCD1-204	ENST00000547637	S100A7L2	Q5SY68	101 aa		12.93	□□□□□ -0.34
SMARCD1-204	ENST00000547637	ARL17A	Q8IVW1	177 aa		12.93	□□□□□ -0.34
SMARCD1-204	ENST00000547637		H0Y8G0	127 aa		12.92	□□□□□ -0.34
SMARCD1-204	ENST00000547637		Q6ZRX8	168 aa		12.92	□□□□□ -0.34
SMARCD1-204	ENST00000547637		Q8N377	158 aa		12.92	□□□□□ -0.34
SMARCD1-204	ENST00000547637	LEPROT	O15243	131 aa		12.91	□□□□□ -0.34
SMARCD1-204	ENST00000547637	SPANXB1	Q9NS25	103 aa	Predicted RBP	12.91	□□□□□ -0.34
SMARCD1-204	ENST00000547637	ERC2-IT1	O76042	136 aa		12.9	□□□□□ -0.34
SMARCD1-204	ENST00000547637	HERVK_113	P61574	105 aa		12.89	□□□□□ -0.35
SMARCD1-204	ENST00000547637	C9orf153	Q5TBE3	101 aa		12.89	□□□□□ -0.35
SMARCD1-204	ENST00000547637	PLN	P26678	52 aa		12.88	□□□□□ -0.35
SMARCD1-204	ENST00000547637	NMU	P48645	174 aa		12.88	□□□□□ -0.35
SMARCD1-204	ENST00000547637	LEPROTL1	O95214	131 aa		12.87	□□□□□ -0.35
SMARCD1-204	ENST00000547637	NDUFC2	O95298	119 aa		12.87	□□□□□ -0.35
SMARCD1-204	ENST00000547637	HINT1	P49773	126 aa	Predicted RBP	12.87	□□□□□ -0.35
SMARCD1-204	ENST00000547637		Q9BRP9	147 aa		12.87	□□□□□ -0.35
SMARCD1-204	ENST00000547637	CBY1	Q9Y3M2	126 aa		12.87	□□□□□ -0.35
SMARCD1-204	ENST00000547637	LGALS3	P17931	250 aa	Known RBP	12.86	□□□□□ -0.35
SMARCD1-204	ENST00000547637		J3QQQ9	107 aa		12.85	□□□□□ -0.35
SMARCD1-204	ENST00000547637	TRAV23DV6	A0A075B6W5	121 aa		12.84	□□□□□ -0.35
SMARCD1-204	ENST00000547637	IGLV6-57	P01721	117 aa		12.83	□□□□□ -0.36
SMARCD1-204	ENST00000547637	C5orf52	A6NGY3	159 aa		12.82	□□□□□ -0.36
SMARCD1-204	ENST00000547637	TSPEAR-AS2	P59090	65 aa		12.82	□□□□□ -0.36
SMARCD1-204	ENST00000547637	XP32	Q5T750	250 aa		12.82	□□□□□ -0.36
SMARCD1-204	ENST00000547637	HSPB8	Q9UJY1	196 aa		12.82	□□□□□ -0.36

Retrieved 100 of 20,778 RNA–protein pairs in 103.7 ms