RNA–Protein interactions for RNA: ENST00000547486.1

CPSF6-204, Transcript of cleavage and polyadenylation specific factor 6, humanhuman

TSL 2

Gene CPSF6, Length 872 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF6-204ENST00000547486 FAM19A1Q7Z5A9 133 aa7.78□□□□□ -1.16
CPSF6-204ENST00000547486 RPL24P83731 157 aaKnown RBP7.77□□□□□ -1.17
CPSF6-204ENST00000547486 FAM229BQ4G0N7 80 aa7.77□□□□□ -1.17
CPSF6-204ENST00000547486 CHTOPQ9Y3Y2 248 aaKnown RBP7.77□□□□□ -1.17
CPSF6-204ENST00000547486 YPEL4Q96NS1 127 aa7.76□□□□□ -1.17
CPSF6-204ENST00000547486 TMEM223A0PJW6 202 aa7.75□□□□□ -1.17
CPSF6-204ENST00000547486 PLEKHB2Q96CS7 222 aa7.75□□□□□ -1.17
CPSF6-204ENST00000547486 A0A0U1RRA0 63 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 SNAPINO95295 136 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 LINC00158P58513 81 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 SFTA2Q6UW10 78 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 SVBPQ8N300 66 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 RETNLBQ9BQ08 111 aa7.74□□□□□ -1.17
CPSF6-204ENST00000547486 LINC00304Q8N9R0 145 aa7.73□□□□□ -1.17
CPSF6-204ENST00000547486 IFI27L1Q96BM0 104 aa7.73□□□□□ -1.17
CPSF6-204ENST00000547486 CHCHD1Q96BP2 118 aaKnown RBP7.73□□□□□ -1.17
CPSF6-204ENST00000547486 IGKV2D-26A0A0A0MRZ7 120 aa7.72□□□□□ -1.17
CPSF6-204ENST00000547486 TRAV12-1A0A0B4J245 112 aa7.72□□□□□ -1.17
CPSF6-204ENST00000547486 CBLN2Q8IUK8 224 aa7.72□□□□□ -1.17
CPSF6-204ENST00000547486 SMIM13P0DJ93 91 aa7.71□□□□□ -1.18
CPSF6-204ENST00000547486 NDUFA5Q16718 116 aa7.71□□□□□ -1.18
CPSF6-204ENST00000547486 C3orf22Q8N5N4 141 aa7.71□□□□□ -1.18
CPSF6-204ENST00000547486 FAM19A2Q8N3H0 131 aa7.7□□□□□ -1.18
CPSF6-204ENST00000547486 HIGD2AQ9BW72 106 aa7.7□□□□□ -1.18
CPSF6-204ENST00000547486 BOD1L2Q8IYS8 172 aa7.68□□□□□ -1.18
CPSF6-204ENST00000547486 SPRR4Q96PI1 79 aa7.68□□□□□ -1.18
CPSF6-204ENST00000547486 NCR3O14931 201 aa7.67□□□□□ -1.18
CPSF6-204ENST00000547486 MIR7-3HGQ8N6C7 128 aa7.67□□□□□ -1.18
CPSF6-204ENST00000547486 ATP6V1G1O75348 118 aa7.66□□□□□ -1.18
CPSF6-204ENST00000547486 MEIG1Q5JSS6 88 aa7.66□□□□□ -1.18
CPSF6-204ENST00000547486 KCNQ1DNQ9H478 68 aa7.66□□□□□ -1.18
CPSF6-204ENST00000547486 IGLV7-46A0A075B6I9 117 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 HSBP1O75506 76 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 SPRR1AP35321 89 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 LINC00310P59036 64 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 HERV-K104P63124 156 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 NDUFA12Q9UI09 145 aa7.65□□□□□ -1.18
CPSF6-204ENST00000547486 KRTAP4-16G5E9R7 235 aaPredicted RBP7.64□□□□□ -1.19
CPSF6-204ENST00000547486 H0Y8G0 127 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 PRYO14603 147 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 TRGC2P03986 189 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 TSPEAR-AS2P59090 65 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 CTAG1AP78358 180 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 FAT4Q6V0I7 4981 aa7.64□□□□□ -1.19
CPSF6-204ENST00000547486 TPRXLQ17RH7 258 aa7.63□□□□□ -1.19
CPSF6-204ENST00000547486 LINC00337Q8N6G1 96 aa7.63□□□□□ -1.19
CPSF6-204ENST00000547486 SMCR5Q8TEV8 140 aa7.63□□□□□ -1.19
CPSF6-204ENST00000547486 TRBV10-3A0A0K0K1G6 114 aa7.62□□□□□ -1.19
CPSF6-204ENST00000547486 MYMXA0A1B0GTQ4 84 aa7.62□□□□□ -1.19
CPSF6-204ENST00000547486 DAND5Q8N907 189 aa7.62□□□□□ -1.19
CPSF6-204ENST00000547486 CDIP1Q9H305 208 aa7.62□□□□□ -1.19
CPSF6-204ENST00000547486 LINC00587B1AMM8 73 aa7.61□□□□□ -1.19
CPSF6-204ENST00000547486 SERF1AO75920 110 aa7.61□□□□□ -1.19
CPSF6-204ENST00000547486 SPAG11AQ6PDA7 123 aa7.61□□□□□ -1.19
CPSF6-204ENST00000547486 PPDPFQ9H3Y8 114 aa7.61□□□□□ -1.19
CPSF6-204ENST00000547486 LOC107984156A0A0G2JMH3 177 aa7.6□□□□□ -1.19
CPSF6-204ENST00000547486 LEPROTO15243 131 aa7.6□□□□□ -1.19
CPSF6-204ENST00000547486 LEPROTL1O95214 131 aa7.6□□□□□ -1.19
CPSF6-204ENST00000547486 ARL17AQ8IVW1 177 aa7.6□□□□□ -1.19
CPSF6-204ENST00000547486 PMCHL2Q9BQD1 86 aa7.6□□□□□ -1.19
CPSF6-204ENST00000547486 ZNF706Q9Y5V0 76 aaPredicted RBP7.6□□□□□ -1.19
CPSF6-204ENST00000547486 A0A0U1RQV1 116 aa7.59□□□□□ -1.19
CPSF6-204ENST00000547486 ETDCA0A1B0GVM5 59 aa7.59□□□□□ -1.19
CPSF6-204ENST00000547486 ERC2-IT1O76042 136 aa7.59□□□□□ -1.19
CPSF6-204ENST00000547486 Q8NBF4 154 aa7.59□□□□□ -1.19
CPSF6-204ENST00000547486 MAP1LC3CQ9BXW4 147 aa7.59□□□□□ -1.19
CPSF6-204ENST00000547486 B5MCH6 92 aa7.58□□□□□ -1.2
CPSF6-204ENST00000547486 J3QQQ9 107 aa7.58□□□□□ -1.2
CPSF6-204ENST00000547486 FABP4P15090 132 aa7.58□□□□□ -1.2
CPSF6-204ENST00000547486 LCE2AQ5TA79 106 aaPredicted RBP7.58□□□□□ -1.2
CPSF6-204ENST00000547486 MUC17Q685J3 4493 aa7.57□□□□□ -1.2
CPSF6-204ENST00000547486 PLNP26678 52 aa7.57□□□□□ -1.2
CPSF6-204ENST00000547486 LINC00483Q53H64 154 aa7.57□□□□□ -1.2
CPSF6-204ENST00000547486 C4orf48Q5BLP8 95 aa7.57□□□□□ -1.2
CPSF6-204ENST00000547486 EIF4EBP3O60516 100 aaPredicted RBP7.56□□□□□ -1.2
CPSF6-204ENST00000547486 DPM2O94777 84 aa7.56□□□□□ -1.2
CPSF6-204ENST00000547486 DDTP30046 118 aa7.56□□□□□ -1.2
CPSF6-204ENST00000547486 GAGE2AQ6NT46 116 aa7.56□□□□□ -1.2
CPSF6-204ENST00000547486 TRBV10-2A0A0K0K1G8 114 aa7.55□□□□□ -1.2
CPSF6-204ENST00000547486 COLCA2A8K830 154 aa7.55□□□□□ -1.2
CPSF6-204ENST00000547486 SLC7A5P1Q8MH63 180 aa7.55□□□□□ -1.2
CPSF6-204ENST00000547486 Q9BRP9 147 aa7.55□□□□□ -1.2
CPSF6-204ENST00000547486 HSPB8Q9UJY1 196 aa7.55□□□□□ -1.2
CPSF6-204ENST00000547486 IGKCP01834 107 aa7.54□□□□□ -1.2
CPSF6-204ENST00000547486 FP248Q71RG6 208 aaPredicted RBP7.54□□□□□ -1.2
CPSF6-204ENST00000547486 LGALS3P17931 250 aaKnown RBP7.53□□□□□ -1.2
CPSF6-204ENST00000547486 KRTAP13-3Q3SY46 172 aa7.53□□□□□ -1.2
CPSF6-204ENST00000547486 ADAMTSL4-AS1Q5T5F5 129 aa7.53□□□□□ -1.2
CPSF6-204ENST00000547486 SOSTDC1Q6X4U4 206 aa7.53□□□□□ -1.2
CPSF6-204ENST00000547486 IGLV9-49A0A0B4J1Y8 123 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 SPINK1P00995 79 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 IGLV6-57P01721 117 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 NMUP48645 174 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 HERVK_113P61574 105 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 S100A12P80511 92 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 MOBPQ13875 183 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 Q6ZRX8 168 aa7.52□□□□□ -1.21
CPSF6-204ENST00000547486 SPANXB1Q9NS25 103 aaPredicted RBP7.52□□□□□ -1.21
CPSF6-204ENST00000547486 A0A0J9YXY3 114 aa7.51□□□□□ -1.21
CPSF6-204ENST00000547486 NDUFC2O95298 119 aa7.51□□□□□ -1.21
Retrieved 100 of 20,778 RNA–protein pairs in 8.1 ms