RNA–Protein interactions for RNA: ENST00000546378.1

HOXC11-202, Transcript of homeobox C11, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXC11, Length 3,261 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXC11-202ENST00000546378 Q6ZQY7 126 aa10.15□□□□□ -0.78
HOXC11-202ENST00000546378 CYSRT1A8MQ03 144 aa10.15□□□□□ -0.79
HOXC11-202ENST00000546378 UBL5Q9BZL1 73 aa10.15□□□□□ -0.79
HOXC11-202ENST00000546378 H0YGX0 51 aa10.14□□□□□ -0.79
HOXC11-202ENST00000546378 KRTAP10-3P60369 221 aa10.14□□□□□ -0.79
HOXC11-202ENST00000546378 TRBV6-4A0A1B0GX49 114 aa10.13□□□□□ -0.79
HOXC11-202ENST00000546378 IBA57-AS1B1ANH7 110 aa10.12□□□□□ -0.79
HOXC11-202ENST00000546378 DEFB121Q5J5C9 76 aa10.12□□□□□ -0.79
HOXC11-202ENST00000546378 Q8NDZ9 215 aa10.12□□□□□ -0.79
HOXC11-202ENST00000546378 A0A087WZ39 114 aa10.11□□□□□ -0.79
HOXC11-202ENST00000546378 REG3AQ06141 175 aa10.11□□□□□ -0.79
HOXC11-202ENST00000546378 C16orf95Q9H693 158 aa10.11□□□□□ -0.79
HOXC11-202ENST00000546378 PLAC8L1A1L4L8 177 aa10.1□□□□□ -0.79
HOXC11-202ENST00000546378 SPAG11BQ08648 103 aa10.1□□□□□ -0.79
HOXC11-202ENST00000546378 SERP2Q8N6R1 65 aa10.1□□□□□ -0.79
HOXC11-202ENST00000546378 Q8N814 137 aa10.1□□□□□ -0.79
HOXC11-202ENST00000546378 CSMD3Q7Z407 3707 aa10.1□□□□□ -0.79
HOXC11-202ENST00000546378 IMUPQ9GZP8 106 aa10.09□□□□□ -0.79
HOXC11-202ENST00000546378 C3orf84H3BNL1 204 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 RBM3P98179 157 aaKnown RBP10.08□□□□□ -0.8
HOXC11-202ENST00000546378 SMIM9A6NGZ8 99 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 RMI2Q96E14 147 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 C2orf48Q96LS8 159 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 TENM3Q9P273 2699 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 LRCOL1A6NCL2 159 aa10.08□□□□□ -0.8
HOXC11-202ENST00000546378 TRAV10A0A0B4J240 114 aa10.06□□□□□ -0.8
HOXC11-202ENST00000546378 OVOL2Q9BRP0 275 aa10.06□□□□□ -0.8
HOXC11-202ENST00000546378 OXTP01178 125 aa10.05□□□□□ -0.8
HOXC11-202ENST00000546378 CCKP06307 115 aa10.05□□□□□ -0.8
HOXC11-202ENST00000546378 MPLKIPQ8TAP9 179 aa10.04□□□□□ -0.8
HOXC11-202ENST00000546378 PRO0255Q9UI72 69 aa10.04□□□□□ -0.8
HOXC11-202ENST00000546378 CELA1Q9UNI1 258 aa10.04□□□□□ -0.8
HOXC11-202ENST00000546378 TRBV10-3A0A0K0K1G6 114 aa10.04□□□□□ -0.8
HOXC11-202ENST00000546378 DPH3Q96FX2 82 aa10.04□□□□□ -0.8
HOXC11-202ENST00000546378 TMEM256-PLSCR3K7ERE1 68 aa10.03□□□□□ -0.8
HOXC11-202ENST00000546378 Q6JHZ5 121 aa10.02□□□□□ -0.8
HOXC11-202ENST00000546378 PRR4Q16378 134 aa10.02□□□□□ -0.81
HOXC11-202ENST00000546378 A0A0U1RQV1 116 aa10.01□□□□□ -0.81
HOXC11-202ENST00000546378 NANOS2P60321 138 aaKnown RBP10.01□□□□□ -0.81
HOXC11-202ENST00000546378 IGLV1-51P01701 117 aa10.01□□□□□ -0.81
HOXC11-202ENST00000546378 RETNQ9HD89 108 aa10.01□□□□□ -0.81
HOXC11-202ENST00000546378 PKIGQ9Y2B9 76 aa10□□□□□ -0.81
HOXC11-202ENST00000546378 ZNF561-AS1K7EIQ3 104 aa9.99□□□□□ -0.81
HOXC11-202ENST00000546378 F8WEM9 126 aa9.99□□□□□ -0.81
HOXC11-202ENST00000546378 CRYGAP11844 174 aa9.99□□□□□ -0.81
HOXC11-202ENST00000546378 JMJD7-PLA2G4BH0Y9G9 81 aa9.98□□□□□ -0.81
HOXC11-202ENST00000546378 CAMK2N2Q96S95 79 aa9.98□□□□□ -0.81
HOXC11-202ENST00000546378 Q8IZM0 81 aa9.97□□□□□ -0.81
HOXC11-202ENST00000546378 CSNK1G2-AS1Q8NCQ2 148 aa9.97□□□□□ -0.81
HOXC11-202ENST00000546378 SRRM2Q9UQ35 2752 aaKnown RBP9.97□□□□□ -0.81
HOXC11-202ENST00000546378 KRTAP24-1Q3LI83 254 aa9.97□□□□□ -0.81
HOXC11-202ENST00000546378 CD164L2Q6UWJ8 174 aa9.97□□□□□ -0.81
HOXC11-202ENST00000546378 OXLD1Q5BKU9 147 aa9.96□□□□□ -0.81
HOXC11-202ENST00000546378 IL17DQ8TAD2 202 aa9.96□□□□□ -0.81
HOXC11-202ENST00000546378 MRAPQ8TCY5 172 aa9.96□□□□□ -0.81
HOXC11-202ENST00000546378 TM2D3Q9BRN9 247 aa9.96□□□□□ -0.81
HOXC11-202ENST00000546378 RPL37AP8A6NKH3 93 aa9.96□□□□□ -0.82
HOXC11-202ENST00000546378 Q6ZVQ6 151 aa9.96□□□□□ -0.82
HOXC11-202ENST00000546378 LINC01547P58512 204 aaPredicted RBP9.95□□□□□ -0.82
HOXC11-202ENST00000546378 C1orf43Q9BWL3 253 aa9.95□□□□□ -0.82
HOXC11-202ENST00000546378 C19orf73Q9NVV2 129 aa9.95□□□□□ -0.82
HOXC11-202ENST00000546378 IGKV2D-24A0A075B6R9 120 aa9.95□□□□□ -0.82
HOXC11-202ENST00000546378 BPY2O14599 106 aa9.95□□□□□ -0.82
HOXC11-202ENST00000546378 TENM2Q9NT68 2774 aa9.95□□□□□ -0.82
HOXC11-202ENST00000546378 A0A0G2JQZ4 141 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 FAM236DA0A1B0GTK5 79 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 A0A1W2PNN7 141 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 FAM236CP0DP71 79 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 C5orf47Q569G3 176 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 LINC00474Q9P2X8 69 aa9.94□□□□□ -0.82
HOXC11-202ENST00000546378 DEFB116Q30KQ4 102 aa9.93□□□□□ -0.82
HOXC11-202ENST00000546378 TMEM258P61165 79 aa9.93□□□□□ -0.82
HOXC11-202ENST00000546378 LINC00575Q6W349 94 aa9.93□□□□□ -0.82
HOXC11-202ENST00000546378 KIAA0087Q14695 138 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 C9orf66Q5T8R8 295 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 WFDC10BQ8IUB3 73 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 LINC01600Q96MT4 127 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 X6R8D5 127 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 DIRC1Q969H9 104 aa9.92□□□□□ -0.82
HOXC11-202ENST00000546378 BRK1Q8WUW1 75 aa9.9□□□□□ -0.83
HOXC11-202ENST00000546378 ZNF73O43830 326 aaPredicted RBP9.88□□□□□ -0.83
HOXC11-202ENST00000546378 CMC4P56277 68 aaPredicted RBP9.88□□□□□ -0.83
HOXC11-202ENST00000546378 COL7A1Q02388 2944 aa9.88□□□□□ -0.83
HOXC11-202ENST00000546378 COX7BP24311 80 aa9.88□□□□□ -0.83
HOXC11-202ENST00000546378 Q6ZQT0 140 aa9.88□□□□□ -0.83
HOXC11-202ENST00000546378 C6orf48Q9UBA6 75 aa9.88□□□□□ -0.83
HOXC11-202ENST00000546378 FAM30AQ9NZY2 134 aa9.87□□□□□ -0.83
HOXC11-202ENST00000546378 MUC7Q8TAX7 377 aa9.86□□□□□ -0.83
HOXC11-202ENST00000546378 A0A096LNI7 61 aa9.86□□□□□ -0.83
HOXC11-202ENST00000546378 NREPQ16612 68 aa9.86□□□□□ -0.83
HOXC11-202ENST00000546378 FAM19A3Q7Z5A8 133 aa9.86□□□□□ -0.83
HOXC11-202ENST00000546378 Q6ZRU5 148 aa9.85□□□□□ -0.83
HOXC11-202ENST00000546378 A0A1B0GUV1 79 aa9.82□□□□□ -0.84
HOXC11-202ENST00000546378 SPART-AS1P0CW21 52 aa9.82□□□□□ -0.84
HOXC11-202ENST00000546378 NKAPP1Q8N9T2 125 aa9.82□□□□□ -0.84
HOXC11-202ENST00000546378 LINC00336Q6ZUF6 198 aa9.81□□□□□ -0.84
HOXC11-202ENST00000546378 OBSCN-AS1Q96MR7 158 aa9.81□□□□□ -0.84
HOXC11-202ENST00000546378 STAB2Q8WWQ8 2551 aa9.81□□□□□ -0.84
HOXC11-202ENST00000546378 Q6ZTC4 211 aa9.8□□□□□ -0.84
HOXC11-202ENST00000546378 HIGD2AQ9BW72 106 aa9.8□□□□□ -0.84
Retrieved 100 of 20,778 RNA–protein pairs in 32.4 ms