RNA–Protein interactions for RNA: ENST00000545942.5

CHD4-214, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 1 (best)

Gene CHD4, Length 1,317 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-214ENST00000545942 TMEM238C9JI98 176 aa13.35□□□□□ -0.27
CHD4-214ENST00000545942 FAM229BQ4G0N7 80 aa13.35□□□□□ -0.27
CHD4-214ENST00000545942 IFI27L1Q96BM0 104 aa13.35□□□□□ -0.27
CHD4-214ENST00000545942 YPEL4Q96NS1 127 aa13.35□□□□□ -0.27
CHD4-214ENST00000545942 LINC00158P58513 81 aa13.34□□□□□ -0.27
CHD4-214ENST00000545942 KRTAP13-2Q52LG2 175 aa13.34□□□□□ -0.27
CHD4-214ENST00000545942 Q8NDZ9 215 aa13.34□□□□□ -0.27
CHD4-214ENST00000545942 TMEM223A0PJW6 202 aa13.33□□□□□ -0.28
CHD4-214ENST00000545942 M0R378 163 aa13.33□□□□□ -0.28
CHD4-214ENST00000545942 IGKV2D-26A0A0A0MRZ7 120 aa13.28□□□□□ -0.28
CHD4-214ENST00000545942 A0A0U1RRA0 63 aa13.28□□□□□ -0.28
CHD4-214ENST00000545942 HSBP1O75506 76 aa13.26□□□□□ -0.29
CHD4-214ENST00000545942 LINC00304Q8N9R0 145 aa13.26□□□□□ -0.29
CHD4-214ENST00000545942 ATP6V1G1O75348 118 aa13.25□□□□□ -0.29
CHD4-214ENST00000545942 CBLN2Q8IUK8 224 aa13.25□□□□□ -0.29
CHD4-214ENST00000545942 FAM19A2Q8N3H0 131 aa13.25□□□□□ -0.29
CHD4-214ENST00000545942 PLEKHB2Q96CS7 222 aa13.25□□□□□ -0.29
CHD4-214ENST00000545942 SMIM13P0DJ93 91 aa13.24□□□□□ -0.29
CHD4-214ENST00000545942 HERV-K104P63124 156 aa13.23□□□□□ -0.29
CHD4-214ENST00000545942 MEIG1Q5JSS6 88 aa13.23□□□□□ -0.29
CHD4-214ENST00000545942 HIGD2AQ9BW72 106 aa13.23□□□□□ -0.29
CHD4-214ENST00000545942 BOD1L2Q8IYS8 172 aa13.21□□□□□ -0.29
CHD4-214ENST00000545942 LINC00587B1AMM8 73 aa13.2□□□□□ -0.3
CHD4-214ENST00000545942 MIR7-3HGQ8N6C7 128 aa13.2□□□□□ -0.3
CHD4-214ENST00000545942 NDUFA12Q9UI09 145 aa13.2□□□□□ -0.3
CHD4-214ENST00000545942 H0Y8G0 127 aa13.18□□□□□ -0.3
CHD4-214ENST00000545942 TRGC2P03986 189 aa13.18□□□□□ -0.3
CHD4-214ENST00000545942 CTAG1AP78358 180 aa13.18□□□□□ -0.3
CHD4-214ENST00000545942 MUC2Q02817 5179 aa13.17□□□□□ -0.3
CHD4-214ENST00000545942 MYMXA0A1B0GTQ4 84 aa13.17□□□□□ -0.3
CHD4-214ENST00000545942 PRYO14603 147 aa13.17□□□□□ -0.3
CHD4-214ENST00000545942 RETNLBQ9BQ08 111 aa13.17□□□□□ -0.3
CHD4-214ENST00000545942 NCR3O14931 201 aa13.16□□□□□ -0.3
CHD4-214ENST00000545942 LEPROTL1O95214 131 aa13.16□□□□□ -0.3
CHD4-214ENST00000545942 MAP1LC3CQ9BXW4 147 aa13.16□□□□□ -0.3
CHD4-214ENST00000545942 C3orf22Q8N5N4 141 aa13.15□□□□□ -0.3
CHD4-214ENST00000545942 SPRR4Q96PI1 79 aa13.15□□□□□ -0.3
CHD4-214ENST00000545942 SERF1AO75920 110 aa13.14□□□□□ -0.31
CHD4-214ENST00000545942 KCNQ1DNQ9H478 68 aa13.14□□□□□ -0.31
CHD4-214ENST00000545942 ZNF706Q9Y5V0 76 aaPredicted RBP13.14□□□□□ -0.31
CHD4-214ENST00000545942 LINC00310P59036 64 aa13.13□□□□□ -0.31
CHD4-214ENST00000545942 LINC00337Q8N6G1 96 aa13.13□□□□□ -0.31
CHD4-214ENST00000545942 PLNP26678 52 aa13.13□□□□□ -0.31
CHD4-214ENST00000545942 SPRR1AP35321 89 aa13.13□□□□□ -0.31
CHD4-214ENST00000545942 LEPROTO15243 131 aa13.12□□□□□ -0.31
CHD4-214ENST00000545942 TSPEAR-AS2P59090 65 aa13.12□□□□□ -0.31
CHD4-214ENST00000545942 HSPB8Q9UJY1 196 aa13.11□□□□□ -0.31
CHD4-214ENST00000545942 TRBV10-3A0A0K0K1G6 114 aa13.1□□□□□ -0.31
CHD4-214ENST00000545942 ETDCA0A1B0GVM5 59 aa13.1□□□□□ -0.31
CHD4-214ENST00000545942 SPAG11AQ6PDA7 123 aa13.09□□□□□ -0.31
CHD4-214ENST00000545942 LOC107984156A0A0G2JMH3 177 aa13.08□□□□□ -0.32
CHD4-214ENST00000545942 KRTAP4-16G5E9R7 235 aaPredicted RBP13.08□□□□□ -0.32
CHD4-214ENST00000545942 S100A12P80511 92 aa13.08□□□□□ -0.32
CHD4-214ENST00000545942 ARL17AQ8IVW1 177 aa13.08□□□□□ -0.32
CHD4-214ENST00000545942 IGLV7-46A0A075B6I9 117 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 J3QQQ9 107 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 DPM2O94777 84 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 FABP4P15090 132 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 HERVK_113P61574 105 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 TPRXLQ17RH7 258 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 DAND5Q8N907 189 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 SMCR5Q8TEV8 140 aa13.07□□□□□ -0.32
CHD4-214ENST00000545942 A0A0U1RQV1 116 aa13.06□□□□□ -0.32
CHD4-214ENST00000545942 NMUP48645 174 aa13.05□□□□□ -0.32
CHD4-214ENST00000545942 PMCHL2Q9BQD1 86 aa13.05□□□□□ -0.32
CHD4-214ENST00000545942 IGKCP01834 107 aa13.04□□□□□ -0.32
CHD4-214ENST00000545942 CDIP1Q9H305 208 aa13.04□□□□□ -0.32
CHD4-214ENST00000545942 TRBV10-2A0A0K0K1G8 114 aa13.03□□□□□ -0.32
CHD4-214ENST00000545942 LGALS3P17931 250 aaKnown RBP13.03□□□□□ -0.32
CHD4-214ENST00000545942 DDTP30046 118 aa13.03□□□□□ -0.32
CHD4-214ENST00000545942 C4orf48Q5BLP8 95 aa13.03□□□□□ -0.32
CHD4-214ENST00000545942 MIEN1Q9BRT3 115 aa13.02□□□□□ -0.33
CHD4-214ENST00000545942 PPDPFQ9H3Y8 114 aa13.02□□□□□ -0.33
CHD4-214ENST00000545942 COLCA2A8K830 154 aa13.01□□□□□ -0.33
CHD4-214ENST00000545942 SPANXB1Q9NS25 103 aaPredicted RBP13.01□□□□□ -0.33
CHD4-214ENST00000545942 B5MCH6 92 aa13□□□□□ -0.33
CHD4-214ENST00000545942 SLC7A5P1Q8MH63 180 aa13□□□□□ -0.33
CHD4-214ENST00000545942 Q8NBF4 154 aa13□□□□□ -0.33
CHD4-214ENST00000545942 LINC00483Q53H64 154 aa12.99□□□□□ -0.33
CHD4-214ENST00000545942 NDUFC2O95298 119 aa12.97□□□□□ -0.33
CHD4-214ENST00000545942 GAGE2AQ6NT46 116 aa12.96□□□□□ -0.33
CHD4-214ENST00000545942 S100A7L2Q5SY68 101 aa12.95□□□□□ -0.34
CHD4-214ENST00000545942 Q6ZRX8 168 aa12.95□□□□□ -0.34
CHD4-214ENST00000545942 FP248Q71RG6 208 aaPredicted RBP12.95□□□□□ -0.34
CHD4-214ENST00000545942 ERC2-IT1O76042 136 aa12.94□□□□□ -0.34
CHD4-214ENST00000545942 IGLV6-57P01721 117 aa12.94□□□□□ -0.34
CHD4-214ENST00000545942 Q9BRP9 147 aa12.94□□□□□ -0.34
CHD4-214ENST00000545942 E9PLD3 99 aa12.93□□□□□ -0.34
CHD4-214ENST00000545942 SPINK1P00995 79 aa12.93□□□□□ -0.34
CHD4-214ENST00000545942 A0A0J9YXY3 114 aa12.92□□□□□ -0.34
CHD4-214ENST00000545942 TRAV23DV6A0A075B6W5 121 aa12.9□□□□□ -0.34
CHD4-214ENST00000545942 NPC2P61916 151 aa12.9□□□□□ -0.34
CHD4-214ENST00000545942 ADAMTSL4-AS1Q5T5F5 129 aa12.9□□□□□ -0.34
CHD4-214ENST00000545942 SOSTDC1Q6X4U4 206 aa12.9□□□□□ -0.34
CHD4-214ENST00000545942 IGLV9-49A0A0B4J1Y8 123 aa12.89□□□□□ -0.35
CHD4-214ENST00000545942 MOBPQ13875 183 aa12.89□□□□□ -0.35
CHD4-214ENST00000545942 JOSD1Q15040 202 aaPredicted RBP12.89□□□□□ -0.35
CHD4-214ENST00000545942 EIF4EBP3O60516 100 aaPredicted RBP12.88□□□□□ -0.35
CHD4-214ENST00000545942 SYS1-DBNDD2H3BUS1 97 aa12.88□□□□□ -0.35
CHD4-214ENST00000545942 SSBP3-AS1Q7Z2R9 100 aa12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 119.9 ms