RNA–Protein interactions for RNA: ENST00000545694.1

SYNE1-239, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 3

Gene SYNE1, Length 526 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-239ENST00000545694 IGLV10-54A0A075B6I4 117 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 J3QR89 54 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 K7ERU9 68 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 SPAG11BQ08648 103 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 LINC01600Q96MT4 127 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 SND1-IT1Q9HBX3 110 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 CBY1Q9Y3M2 126 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 COL7A1Q02388 2944 aa4.16□□□□□ -1.74
SYNE1-239ENST00000545694 NUPR2A6NF83 97 aa4.15□□□□□ -1.75
SYNE1-239ENST00000545694 H0YGX0 51 aa4.15□□□□□ -1.75
SYNE1-239ENST00000545694 PRB2P02812 416 aaPredicted RBP4.15□□□□□ -1.75
SYNE1-239ENST00000545694 RPL13AP40429 203 aaKnown RBP4.15□□□□□ -1.75
SYNE1-239ENST00000545694 RPL28P46779 137 aaKnown RBP4.15□□□□□ -1.75
SYNE1-239ENST00000545694 SOSTDC1Q6X4U4 206 aa4.15□□□□□ -1.75
SYNE1-239ENST00000545694 DAND5Q8N907 189 aa4.15□□□□□ -1.75
SYNE1-239ENST00000545694 CARD19Q96LW7 228 aa4.15□□□□□ -1.75
SYNE1-239ENST00000545694 NAA38Q9BRA0 125 aaKnown RBP4.15□□□□□ -1.75
SYNE1-239ENST00000545694 DNAH7Q8WXX0 4024 aa4.14□□□□□ -1.75
SYNE1-239ENST00000545694 H3BMG7 143 aa4.14□□□□□ -1.75
SYNE1-239ENST00000545694 PFN2P35080 140 aa4.14□□□□□ -1.75
SYNE1-239ENST00000545694 KRTAP26-1Q6PEX3 210 aa4.14□□□□□ -1.75
SYNE1-239ENST00000545694 LINC00588Q9Y4M8 146 aa4.14□□□□□ -1.75
SYNE1-239ENST00000545694 TRBV10-2A0A0K0K1G8 114 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 A0A0U1RRA0 63 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 A0A1B0GX51 115 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 H3BT86 120 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 TRIAP1O43715 76 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 SNCGO76070 127 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 TCL1BO95988 128 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 TRACP01848 142 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 NPC2P61916 151 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 TMEM126AQ9H061 195 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 PRO0461Q9UI25 63 aa4.13□□□□□ -1.75
SYNE1-239ENST00000545694 IGKV2D-24A0A075B6R9 120 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 H7C2G1 150 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 LST1O00453 97 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 LINC01620Q4KN68 170 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 OCIAD2Q56VL3 154 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 C2orf82Q6UX34 121 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 CAMK2N2Q96S95 79 aa4.12□□□□□ -1.75
SYNE1-239ENST00000545694 PLECQ15149 4684 aaKnown RBP4.12□□□□□ -1.75
SYNE1-239ENST00000545694 IGKV2-28A0A075B6P5 120 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 NDUFC2-KCTD14E9PQ53 114 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 SLC25A20O43772 301 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 IGKV2D-28P01615 120 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 TLX1NBP0CAT3 122 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 TTC32Q5I0X7 151 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 UNQ6190/PRO20217Q6UXQ8 127 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 TEN1Q86WV5 123 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 APLNQ9ULZ1 77 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 PKIGQ9Y2B9 76 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 DNAH1Q9P2D7 4330 aa4.11□□□□□ -1.75
SYNE1-239ENST00000545694 PRKDCP78527 4128 aaKnown RBP4.1□□□□□ -1.75
SYNE1-239ENST00000545694 H3BQ85 93 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 SYCNQ0VAF6 134 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 WFDC2Q14508 124 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 C14orf177Q52M58 125 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 UBE2DNLQ8IWF7 75 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 ANKRD29Q8N6D5 301 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 LINC00337Q8N6G1 96 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 C15orf56Q8N910 161 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 C6orf48Q9UBA6 75 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 DNHD1Q96M86 4753 aa4.1□□□□□ -1.75
SYNE1-239ENST00000545694 C9JAW5 83 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 C10orf25Q5T742 122 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 C6orf223Q8N319 242 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 OR13C6PQ8NH95 151 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 PPDPFLQ8WWR9 84 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 TENM2Q9NT68 2774 aa4.09□□□□□ -1.75
SYNE1-239ENST00000545694 VPS13DQ5THJ4 4388 aa4.09□□□□□ -1.76
SYNE1-239ENST00000545694 TRBV7-6A0A0J9YX20 115 aa4.08□□□□□ -1.76
SYNE1-239ENST00000545694 DNAL4O96015 105 aa4.08□□□□□ -1.76
SYNE1-239ENST00000545694 ETDBQ3ZM63 59 aa4.08□□□□□ -1.76
SYNE1-239ENST00000545694 S100A7L2Q5SY68 101 aa4.08□□□□□ -1.76
SYNE1-239ENST00000545694 SMIM11BQ8TCY0 68 aa4.08□□□□□ -1.76
SYNE1-239ENST00000545694 M0R378 163 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 IGLV6-57P01721 117 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 HIGD2BQ4VC39 106 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 C9orf116Q5BN46 136 aaPredicted RBP4.07□□□□□ -1.76
SYNE1-239ENST00000545694 Q6ZRU5 148 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 Q9HAA7 133 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 CSMD3Q7Z407 3707 aa4.07□□□□□ -1.76
SYNE1-239ENST00000545694 MEGF8Q7Z7M0 2845 aa4.06□□□□□ -1.76
SYNE1-239ENST00000545694 USP17L23D6RBM5 183 aa4.06□□□□□ -1.76
SYNE1-239ENST00000545694 CNBPP62633 177 aaKnown RBP4.06□□□□□ -1.76
SYNE1-239ENST00000545694 C21orf62-AS1Q17RA5 79 aa4.06□□□□□ -1.76
SYNE1-239ENST00000545694 CLEC2BQ92478 149 aa4.06□□□□□ -1.76
SYNE1-239ENST00000545694 IGLV5-37A0A075B6J1 123 aa4.05□□□□□ -1.76
SYNE1-239ENST00000545694 LOC107984640A0A0U1RRK4 108 aa4.05□□□□□ -1.76
SYNE1-239ENST00000545694 PSCAO43653 123 aa4.05□□□□□ -1.76
SYNE1-239ENST00000545694 INAFM2P0DMQ5 153 aa4.05□□□□□ -1.76
SYNE1-239ENST00000545694 DNAH6Q9C0G6 4158 aa4.05□□□□□ -1.76
SYNE1-239ENST00000545694 NBDYA0A0U1RRE5 68 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 FAM240AA0A1B0GVK7 77 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 ACYP1P07311 99 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 BAALC-AS2P0C853 105 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 VPREB1P12018 145 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 DIRC1Q969H9 104 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 LINC00526Q96FQ7 95 aa4.04□□□□□ -1.76
SYNE1-239ENST00000545694 LINC00167Q96N53 147 aa4.04□□□□□ -1.76
Retrieved 100 of 20,778 RNA–protein pairs in 73.5 ms