RNA–Protein interactions for RNA: ENST00000544996.1

CCDC78-216, Transcript of coiled-coil domain containing 78, humanhuman

TSL 4

Gene CCDC78, Length 551 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC78-216ENST00000544996 RPL37AP8A6NKH3 93 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 ZNF861PO60384 105 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BKO60814 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BJP06899 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BOP23527 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BBP33778 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BDP58876 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BCP62807 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST2H2BEQ16778 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST2H2BFQ5QNW6 126 aaPredicted RBP9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BHQ93079 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BNQ99877 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 HIST1H2BMQ99879 126 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 MAP1LC3CQ9BXW4 147 aa9.55□□□□□ -0.88
CCDC78-216ENST00000544996 DPM2O94777 84 aa9.54□□□□□ -0.88
CCDC78-216ENST00000544996 S100A6P06703 90 aa9.54□□□□□ -0.88
CCDC78-216ENST00000544996 KRTAP10-8P60410 259 aa9.54□□□□□ -0.88
CCDC78-216ENST00000544996 HERV-K104P63124 156 aa9.54□□□□□ -0.88
CCDC78-216ENST00000544996 LINC00587B1AMM8 73 aa9.53□□□□□ -0.88
CCDC78-216ENST00000544996 BCE1O60756 84 aa9.53□□□□□ -0.88
CCDC78-216ENST00000544996 MEIG1Q5JSS6 88 aa9.53□□□□□ -0.88
CCDC78-216ENST00000544996 NDUFA12Q9UI09 145 aa9.53□□□□□ -0.88
CCDC78-216ENST00000544996 A0A0U1RRA0 63 aa9.52□□□□□ -0.89
CCDC78-216ENST00000544996 MYMXA0A1B0GTQ4 84 aa9.52□□□□□ -0.89
CCDC78-216ENST00000544996 IGKCP01834 107 aa9.52□□□□□ -0.89
CCDC78-216ENST00000544996 RPL28P46779 137 aaKnown RBP9.52□□□□□ -0.89
CCDC78-216ENST00000544996 HERVK_113P61574 105 aa9.52□□□□□ -0.89
CCDC78-216ENST00000544996 VPREB1P12018 145 aa9.51□□□□□ -0.89
CCDC78-216ENST00000544996 PLEKHB2Q96CS7 222 aa9.51□□□□□ -0.89
CCDC78-216ENST00000544996 LEPROTO15243 131 aa9.5□□□□□ -0.89
CCDC78-216ENST00000544996 SMIM13P0DJ93 91 aa9.5□□□□□ -0.89
CCDC78-216ENST00000544996 PMCHL2Q9BQD1 86 aa9.5□□□□□ -0.89
CCDC78-216ENST00000544996 IGKV2-28A0A075B6P5 120 aa9.49□□□□□ -0.89
CCDC78-216ENST00000544996 IGKV2D-28P01615 120 aa9.49□□□□□ -0.89
CCDC78-216ENST00000544996 J3QQQ9 107 aa9.48□□□□□ -0.89
CCDC78-216ENST00000544996 SNRPEP62304 92 aaKnown RBP9.48□□□□□ -0.89
CCDC78-216ENST00000544996 PRR26Q8N8Z3 221 aa9.48□□□□□ -0.89
CCDC78-216ENST00000544996 IGLV1-50A0A075B6I6 118 aa9.47□□□□□ -0.89
CCDC78-216ENST00000544996 SYS1-DBNDD2H3BUS1 97 aa9.47□□□□□ -0.89
CCDC78-216ENST00000544996 LGALS3P17931 250 aaKnown RBP9.47□□□□□ -0.89
CCDC78-216ENST00000544996 NMUP48645 174 aa9.47□□□□□ -0.89
CCDC78-216ENST00000544996 UBE2AP49459 152 aa9.47□□□□□ -0.89
CCDC78-216ENST00000544996 MIR7-3HGQ8N6C7 128 aa9.47□□□□□ -0.89
CCDC78-216ENST00000544996 TSPEAR-AS2P59090 65 aa9.46□□□□□ -0.9
CCDC78-216ENST00000544996 KRTAP1-4P0C5Y4 121 aa9.45□□□□□ -0.9
CCDC78-216ENST00000544996 BOD1L2Q8IYS8 172 aa9.45□□□□□ -0.9
CCDC78-216ENST00000544996 Q8NDZ9 215 aa9.45□□□□□ -0.9
CCDC78-216ENST00000544996 TNXBP22105 4242 aa9.45□□□□□ -0.9
CCDC78-216ENST00000544996 M0R378 163 aa9.44□□□□□ -0.9
CCDC78-216ENST00000544996 RPL13AP40429 203 aaKnown RBP9.44□□□□□ -0.9
CCDC78-216ENST00000544996 COA6Q5JTJ3 125 aaKnown RBP9.43□□□□□ -0.9
CCDC78-216ENST00000544996 PET117Q6UWS5 81 aa9.43□□□□□ -0.9
CCDC78-216ENST00000544996 TMEM126AQ9H061 195 aa9.43□□□□□ -0.9
CCDC78-216ENST00000544996 TMEM238C9JI98 176 aa9.42□□□□□ -0.9
CCDC78-216ENST00000544996 E9PLD3 99 aa9.42□□□□□ -0.9
CCDC78-216ENST00000544996 FAM19A1Q7Z5A9 133 aa9.42□□□□□ -0.9
CCDC78-216ENST00000544996 IGKV2D-26A0A0A0MRZ7 120 aa9.41□□□□□ -0.9
CCDC78-216ENST00000544996 LINC01545Q5VT33 79 aa9.41□□□□□ -0.9
CCDC78-216ENST00000544996 KRTAP13-1Q8IUC0 172 aa9.41□□□□□ -0.9
CCDC78-216ENST00000544996 PRLHP81277 87 aa9.4□□□□□ -0.9
CCDC78-216ENST00000544996 MIEN1Q9BRT3 115 aa9.4□□□□□ -0.9
CCDC78-216ENST00000544996 DAND5Q8N907 189 aa9.39□□□□□ -0.91
CCDC78-216ENST00000544996 LOC107984156A0A0G2JMH3 177 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 NCR3O14931 201 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 C3orf79P0CE67 100 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 KRTDAPP60985 99 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 ARL17AQ8IVW1 177 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 HMCN2Q8NDA2 5059 aa9.38□□□□□ -0.91
CCDC78-216ENST00000544996 A0A0J9YXY3 114 aa9.36□□□□□ -0.91
CCDC78-216ENST00000544996 C20orf202A1L168 122 aa9.36□□□□□ -0.91
CCDC78-216ENST00000544996 PRYO14603 147 aa9.36□□□□□ -0.91
CCDC78-216ENST00000544996 CRYGAP11844 174 aa9.36□□□□□ -0.91
CCDC78-216ENST00000544996 S100A2P29034 98 aa9.36□□□□□ -0.91
CCDC78-216ENST00000544996 TRBV10-2A0A0K0K1G8 114 aa9.34□□□□□ -0.91
CCDC78-216ENST00000544996 KCNQ1DNQ9H478 68 aa9.34□□□□□ -0.91
CCDC78-216ENST00000544996 TRBV10-3A0A0K0K1G6 114 aa9.33□□□□□ -0.92
CCDC78-216ENST00000544996 PYY3Q5JQD4 70 aa9.33□□□□□ -0.92
CCDC78-216ENST00000544996 HIGD2AQ9BW72 106 aa9.33□□□□□ -0.92
CCDC78-216ENST00000544996 SPANXB1Q9NS25 103 aaPredicted RBP9.33□□□□□ -0.92
CCDC78-216ENST00000544996 A0A087X002 238 aa9.32□□□□□ -0.92
CCDC78-216ENST00000544996 NDUFC2O95298 119 aa9.32□□□□□ -0.92
CCDC78-216ENST00000544996 FAM229BQ4G0N7 80 aa9.32□□□□□ -0.92
CCDC78-216ENST00000544996 LINC00337Q8N6G1 96 aa9.32□□□□□ -0.92
CCDC78-216ENST00000544996 TYMSOSQ8TAI1 123 aa9.32□□□□□ -0.92
CCDC78-216ENST00000544996 ETDCA0A1B0GVM5 59 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 ZNF815PA8K554 130 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 DDTP30046 118 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 ADAMTSL4-AS1Q5T5F5 129 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 HIST3H2BBQ8N257 126 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 ANAPC11Q9NYG5 84 aa9.31□□□□□ -0.92
CCDC78-216ENST00000544996 SPRR1AP35321 89 aa9.3□□□□□ -0.92
CCDC78-216ENST00000544996 NPC2P61916 151 aa9.3□□□□□ -0.92
CCDC78-216ENST00000544996 S100A7L2Q5SY68 101 aa9.3□□□□□ -0.92
CCDC78-216ENST00000544996 TIMM17BO60830 172 aa9.29□□□□□ -0.92
CCDC78-216ENST00000544996 C14orf144Q96I85 54 aa9.29□□□□□ -0.92
CCDC78-216ENST00000544996 TSTD3H0UI37 97 aa9.28□□□□□ -0.92
CCDC78-216ENST00000544996 SOSTDC1Q6X4U4 206 aa9.28□□□□□ -0.92
CCDC78-216ENST00000544996 ZNF706Q9Y5V0 76 aaPredicted RBP9.28□□□□□ -0.92
CCDC78-216ENST00000544996 KRTAP4-16G5E9R7 235 aaPredicted RBP9.26□□□□□ -0.93
CCDC78-216ENST00000544996 JOSD1Q15040 202 aaPredicted RBP9.26□□□□□ -0.93
Retrieved 100 of 20,778 RNA–protein pairs in 37.3 ms