RNA–Protein interactions for RNA: ENST00000544750.1

USP28-212, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 5

Gene USP28, Length 542 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-212ENST00000544750 TPRXLQ17RH7 258 aa7.47□□□□□ -1.21
USP28-212ENST00000544750 HIST2H2BFQ5QNW6 126 aaPredicted RBP7.47□□□□□ -1.21
USP28-212ENST00000544750 HIST1H2BHQ93079 126 aa7.47□□□□□ -1.21
USP28-212ENST00000544750 ZNF625Q96I27 306 aaPredicted RBP7.47□□□□□ -1.21
USP28-212ENST00000544750 HIST1H2BNQ99877 126 aa7.47□□□□□ -1.21
USP28-212ENST00000544750 HIST1H2BMQ99879 126 aa7.47□□□□□ -1.21
USP28-212ENST00000544750 CRYGAP11844 174 aa7.46□□□□□ -1.22
USP28-212ENST00000544750 TYMSOSQ8TAI1 123 aa7.46□□□□□ -1.22
USP28-212ENST00000544750 RETNLBQ9BQ08 111 aa7.46□□□□□ -1.22
USP28-212ENST00000544750 KRTAP13-2Q52LG2 175 aa7.45□□□□□ -1.22
USP28-212ENST00000544750 C22orf24Q9Y442 160 aa7.45□□□□□ -1.22
USP28-212ENST00000544750 H0Y8G0 127 aa7.44□□□□□ -1.22
USP28-212ENST00000544750 FABP4P15090 132 aa7.44□□□□□ -1.22
USP28-212ENST00000544750 CDIP1Q9H305 208 aa7.44□□□□□ -1.22
USP28-212ENST00000544750 ERG28Q9UKR5 140 aa7.44□□□□□ -1.22
USP28-212ENST00000544750 PFN2P35080 140 aa7.43□□□□□ -1.22
USP28-212ENST00000544750 TP73-AS1Q9UF72 201 aa7.43□□□□□ -1.22
USP28-212ENST00000544750 CRCT1Q9UGL9 99 aa7.43□□□□□ -1.22
USP28-212ENST00000544750 IGLV5-37A0A075B6J1 123 aa7.42□□□□□ -1.22
USP28-212ENST00000544750 PMCHL2Q9BQD1 86 aa7.42□□□□□ -1.22
USP28-212ENST00000544750 ANAPC11Q9NYG5 84 aa7.42□□□□□ -1.22
USP28-212ENST00000544750 HSPB8Q9UJY1 196 aa7.42□□□□□ -1.22
USP28-212ENST00000544750 BCE1O60756 84 aa7.41□□□□□ -1.22
USP28-212ENST00000544750 RPL28P46779 137 aaKnown RBP7.41□□□□□ -1.22
USP28-212ENST00000544750 COX17Q14061 63 aa7.41□□□□□ -1.22
USP28-212ENST00000544750 SFTA2Q6UW10 78 aa7.41□□□□□ -1.22
USP28-212ENST00000544750 MRPL55Q7Z7F7 128 aaKnown RBP7.41□□□□□ -1.22
USP28-212ENST00000544750 Q8NDZ9 215 aa7.41□□□□□ -1.22
USP28-212ENST00000544750 SND1-IT1Q9HBX3 110 aa7.41□□□□□ -1.22
USP28-212ENST00000544750 IGLV7-46A0A075B6I9 117 aa7.4□□□□□ -1.22
USP28-212ENST00000544750 TSPEAR-AS2P59090 65 aa7.4□□□□□ -1.22
USP28-212ENST00000544750 LBHQ53QV2 105 aaPredicted RBP7.4□□□□□ -1.22
USP28-212ENST00000544750 VPREB1P12018 145 aa7.39□□□□□ -1.23
USP28-212ENST00000544750 PLNP26678 52 aa7.39□□□□□ -1.23
USP28-212ENST00000544750 COA6Q5JTJ3 125 aaKnown RBP7.39□□□□□ -1.23
USP28-212ENST00000544750 KRTAP13-1Q8IUC0 172 aa7.39□□□□□ -1.23
USP28-212ENST00000544750 LINC00304Q8N9R0 145 aa7.39□□□□□ -1.23
USP28-212ENST00000544750 LINC00167Q96N53 147 aa7.39□□□□□ -1.23
USP28-212ENST00000544750 DPM2O94777 84 aa7.38□□□□□ -1.23
USP28-212ENST00000544750 CTAG1AP78358 180 aa7.38□□□□□ -1.23
USP28-212ENST00000544750 FAM229BQ4G0N7 80 aa7.38□□□□□ -1.23
USP28-212ENST00000544750 RPL37AP8A6NKH3 93 aa7.37□□□□□ -1.23
USP28-212ENST00000544750 IGKCP01834 107 aa7.37□□□□□ -1.23
USP28-212ENST00000544750 MAP1LC3CQ9BXW4 147 aa7.37□□□□□ -1.23
USP28-212ENST00000544750 NDUFA12Q9UI09 145 aa7.37□□□□□ -1.23
USP28-212ENST00000544750 GAGE10A6NGK3 116 aa7.36□□□□□ -1.23
USP28-212ENST00000544750 SYS1-DBNDD2H3BUS1 97 aa7.36□□□□□ -1.23
USP28-212ENST00000544750 LEPROTO15243 131 aa7.36□□□□□ -1.23
USP28-212ENST00000544750 SMIM13P0DJ93 91 aa7.36□□□□□ -1.23
USP28-212ENST00000544750 A0A0U1RRA0 63 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 ATP6V1G1O75348 118 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 LINC00158P58513 81 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 HERV-K104P63124 156 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 NKAPP1Q8N9T2 125 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 PPDPFQ9H3Y8 114 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 FSIP2Q5CZC0 6907 aa7.35□□□□□ -1.23
USP28-212ENST00000544750 S100A1P23297 94 aa7.34□□□□□ -1.23
USP28-212ENST00000544750 LINC01545Q5VT33 79 aa7.34□□□□□ -1.23
USP28-212ENST00000544750 PLEKHB2Q96CS7 222 aa7.34□□□□□ -1.23
USP28-212ENST00000544750 KRTAP4-1Q9BYQ7 146 aa7.34□□□□□ -1.23
USP28-212ENST00000544750 MYMXA0A1B0GTQ4 84 aa7.33□□□□□ -1.24
USP28-212ENST00000544750 J3QQQ9 107 aa7.33□□□□□ -1.24
USP28-212ENST00000544750 MEIG1Q5JSS6 88 aa7.33□□□□□ -1.24
USP28-212ENST00000544750 MIR7-3HGQ8N6C7 128 aa7.33□□□□□ -1.24
USP28-212ENST00000544750 IGKV2-28A0A075B6P5 120 aa7.32□□□□□ -1.24
USP28-212ENST00000544750 IGKV2D-28P01615 120 aa7.32□□□□□ -1.24
USP28-212ENST00000544750 C3orf79P0CE67 100 aa7.32□□□□□ -1.24
USP28-212ENST00000544750 HERVK_113P61574 105 aa7.32□□□□□ -1.24
USP28-212ENST00000544750 E9PLD3 99 aa7.31□□□□□ -1.24
USP28-212ENST00000544750 LINC01547P58512 204 aaPredicted RBP7.31□□□□□ -1.24
USP28-212ENST00000544750 RPL24P83731 157 aaKnown RBP7.31□□□□□ -1.24
USP28-212ENST00000544750 ASB16-AS1Q495Z4 193 aa7.31□□□□□ -1.24
USP28-212ENST00000544750 PET117Q6UWS5 81 aa7.31□□□□□ -1.24
USP28-212ENST00000544750 NMUP48645 174 aa7.3□□□□□ -1.24
USP28-212ENST00000544750 IGKV2D-26A0A0A0MRZ7 120 aa7.29□□□□□ -1.24
USP28-212ENST00000544750 TMEM238C9JI98 176 aa7.29□□□□□ -1.24
USP28-212ENST00000544750 LGALS3P17931 250 aaKnown RBP7.29□□□□□ -1.24
USP28-212ENST00000544750 BOD1L2Q8IYS8 172 aa7.29□□□□□ -1.24
USP28-212ENST00000544750 DAND5Q8N907 189 aa7.29□□□□□ -1.24
USP28-212ENST00000544750 LOC107984156A0A0G2JMH3 177 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 LINC00587B1AMM8 73 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 M0R378 163 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 UBE2AP49459 152 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 KRTAP13-3Q3SY46 172 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 ARL17AQ8IVW1 177 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 TMEM126AQ9H061 195 aa7.28□□□□□ -1.24
USP28-212ENST00000544750 A0A0J9YXY3 114 aa7.27□□□□□ -1.25
USP28-212ENST00000544750 KRTDAPP60985 99 aa7.27□□□□□ -1.25
USP28-212ENST00000544750 FP248Q71RG6 208 aaPredicted RBP7.27□□□□□ -1.25
USP28-212ENST00000544750 C3orf22Q8N5N4 141 aa7.27□□□□□ -1.25
USP28-212ENST00000544750 NCR3O14931 201 aa7.26□□□□□ -1.25
USP28-212ENST00000544750 EIF4EBP3O60516 100 aaPredicted RBP7.26□□□□□ -1.25
USP28-212ENST00000544750 PRLHP81277 87 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 ADAMTSL4-AS1Q5T5F5 129 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 SOSTDC1Q6X4U4 206 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 HIST3H2BBQ8N257 126 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 LITAFQ99732 161 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 TTTY13Q9BZ97 58 aa7.25□□□□□ -1.25
USP28-212ENST00000544750 LCE2CQ5TA81 110 aa7.24□□□□□ -1.25
USP28-212ENST00000544750 FAM19A1Q7Z5A9 133 aa7.24□□□□□ -1.25
Retrieved 100 of 20,778 RNA–protein pairs in 34.3 ms