RNA–Protein interactions for RNA: ENST00000543744.1

PTPN6-222, Transcript of protein tyrosine phosphatase, non-receptor type 6, human

TSL 1 (best)

Gene PTPN6, Length 2,043 nt, Biotype retained intron.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
PTPN6-222	ENST00000543744	LINC00167	Q96N53	147 aa		11.94	□□□□□ -0.5
PTPN6-222	ENST00000543744	STAB1	Q9NY15	2570 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	ESRG	Q1W209	222 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	SMCR5	Q8TEV8	140 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	C14orf132	Q9NPU4	83 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	C6orf48	Q9UBA6	75 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	PKD1L1	Q8TDX9	2849 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	TRBV7-7	A0A0K0K1E9	115 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	C6orf99	Q4VX62	202 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	LINC00643	Q86TS7	51 aa		11.93	□□□□□ -0.5
PTPN6-222	ENST00000543744	C11orf45	Q8TAV5	145 aa		11.92	□□□□□ -0.5
PTPN6-222	ENST00000543744	DEFB131B	A0A096LNP1	70 aa		11.91	□□□□□ -0.5
PTPN6-222	ENST00000543744	ZNF561-AS1	K7EIQ3	104 aa		11.91	□□□□□ -0.5
PTPN6-222	ENST00000543744	SDIM1	Q6ZPB5	146 aa		11.91	□□□□□ -0.5
PTPN6-222	ENST00000543744	ANK2	Q01484	3957 aa		11.91	□□□□□ -0.5
PTPN6-222	ENST00000543744	FBN1	P35555	2871 aa	Known RBP	11.91	□□□□□ -0.5
PTPN6-222	ENST00000543744	CMYA5	Q8N3K9	4069 aa		11.9	□□□□□ -0.5
PTPN6-222	ENST00000543744	KRTAP26-1	Q6PEX3	210 aa		11.9	□□□□□ -0.5
PTPN6-222	ENST00000543744	RPL18A	Q02543	176 aa	Known RBP	11.89	□□□□□ -0.51
PTPN6-222	ENST00000543744	HIGD2B	Q4VC39	106 aa		11.89	□□□□□ -0.51
PTPN6-222	ENST00000543744	CAMK2N2	Q96S95	79 aa		11.89	□□□□□ -0.51
PTPN6-222	ENST00000543744	IGLV6-57	P01721	117 aa		11.88	□□□□□ -0.51
PTPN6-222	ENST00000543744	NHLRC4	P0CG21	123 aa	Predicted RBP	11.88	□□□□□ -0.51
PTPN6-222	ENST00000543744	TMEM256-PLSCR3	K7ERE1	68 aa		11.87	□□□□□ -0.51
PTPN6-222	ENST00000543744	IMUP	Q9GZP8	106 aa		11.87	□□□□□ -0.51
PTPN6-222	ENST00000543744	XAGE1A	Q9HD64	81 aa		11.87	□□□□□ -0.51
PTPN6-222	ENST00000543744	TENM3	Q9P273	2699 aa		11.87	□□□□□ -0.51
PTPN6-222	ENST00000543744	LINC01556	Q5JQF7	62 aa		11.86	□□□□□ -0.51
PTPN6-222	ENST00000543744	LINC00575	Q6W349	94 aa		11.86	□□□□□ -0.51
PTPN6-222	ENST00000543744	MAST4	O15021	2626 aa		11.86	□□□□□ -0.51
PTPN6-222	ENST00000543744	C1orf43	Q9BWL3	253 aa		11.86	□□□□□ -0.51
PTPN6-222	ENST00000543744	JMJD7-PLA2G4B	H0Y9G9	81 aa		11.84	□□□□□ -0.51
PTPN6-222	ENST00000543744	C15orf56	Q8N910	161 aa		11.84	□□□□□ -0.51
PTPN6-222	ENST00000543744	TRBV10-3	A0A0K0K1G6	114 aa		11.82	□□□□□ -0.52
PTPN6-222	ENST00000543744	hADV29S1	A0JD25	119 aa		11.82	□□□□□ -0.52
PTPN6-222	ENST00000543744		Q6ZRU5	148 aa		11.82	□□□□□ -0.52
PTPN6-222	ENST00000543744	C2orf48	Q96LS8	159 aa		11.82	□□□□□ -0.52
PTPN6-222	ENST00000543744	IGKV2D-24	A0A075B6R9	120 aa		11.82	□□□□□ -0.52
PTPN6-222	ENST00000543744	TRAV23DV6	A0A075B6W5	121 aa		11.81	□□□□□ -0.52
PTPN6-222	ENST00000543744	DNAH3	Q8TD57	4116 aa		11.81	□□□□□ -0.52
PTPN6-222	ENST00000543744	CCK	P06307	115 aa		11.8	□□□□□ -0.52
PTPN6-222	ENST00000543744	LINC00846	Q9NV44	126 aa		11.8	□□□□□ -0.52
PTPN6-222	ENST00000543744	NDUFC2-KCTD14	E9PQ53	114 aa		11.79	□□□□□ -0.52
PTPN6-222	ENST00000543744	DIRC1	Q969H9	104 aa		11.78	□□□□□ -0.52
PTPN6-222	ENST00000543744	NOTCH1	P46531	2555 aa		11.78	□□□□□ -0.52
PTPN6-222	ENST00000543744	FAM236A	A0A1B0GUQ0	79 aa		11.77	□□□□□ -0.52
PTPN6-222	ENST00000543744	FAM236B	A0A1B0GV22	79 aa		11.77	□□□□□ -0.52
PTPN6-222	ENST00000543744	DNAH10OS	P0CZ25	163 aa		11.77	□□□□□ -0.52
PTPN6-222	ENST00000543744	VPREB1	P12018	145 aa		11.77	□□□□□ -0.52
PTPN6-222	ENST00000543744	TRAV10	A0A0B4J240	114 aa		11.77	□□□□□ -0.53
PTPN6-222	ENST00000543744	PRB2	P02812	416 aa	Predicted RBP	11.77	□□□□□ -0.53
PTPN6-222	ENST00000543744		F8WDY8	70 aa		11.76	□□□□□ -0.53
PTPN6-222	ENST00000543744	ZNF73	O43830	326 aa	Predicted RBP	11.76	□□□□□ -0.53
PTPN6-222	ENST00000543744	BAHCC1	Q9P281	2608 aa		11.74	□□□□□ -0.53
PTPN6-222	ENST00000543744		M0R378	163 aa		11.74	□□□□□ -0.53
PTPN6-222	ENST00000543744	SYCN	Q0VAF6	134 aa		11.74	□□□□□ -0.53
PTPN6-222	ENST00000543744		Q6ZQY7	126 aa		11.74	□□□□□ -0.53
PTPN6-222	ENST00000543744	CCDC179	H3BU77	68 aa		11.73	□□□□□ -0.53
PTPN6-222	ENST00000543744	COX7B	P24311	80 aa		11.73	□□□□□ -0.53
PTPN6-222	ENST00000543744		Q6JHZ5	121 aa		11.73	□□□□□ -0.53
PTPN6-222	ENST00000543744	TM2D3	Q9BRN9	247 aa		11.73	□□□□□ -0.53
PTPN6-222	ENST00000543744	COL6A5	A8TX70	2615 aa		11.73	□□□□□ -0.53
PTPN6-222	ENST00000543744		Q6ZRP5	223 aa		11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744		H3BQ85	93 aa		11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744	RBM3	P98179	157 aa	Known RBP	11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744	MRAP	Q8TCY5	172 aa		11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744	LAMTOR3	Q9UHA4	124 aa		11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744	LINC00588	Q9Y4M8	146 aa		11.72	□□□□□ -0.53
PTPN6-222	ENST00000543744	TRBV7-6	A0A0J9YX20	115 aa		11.71	□□□□□ -0.53
PTPN6-222	ENST00000543744	ELOF1	P60002	83 aa	Known RBP	11.7	□□□□□ -0.54
PTPN6-222	ENST00000543744	IGKV3D-7	A0A0C4DH55	119 aa		11.7	□□□□□ -0.54
PTPN6-222	ENST00000543744		B5MCH6	92 aa		11.69	□□□□□ -0.54
PTPN6-222	ENST00000543744		K7EIL1	84 aa		11.69	□□□□□ -0.54
PTPN6-222	ENST00000543744	NBEAL1	Q6ZS30	2694 aa		11.68	□□□□□ -0.54
PTPN6-222	ENST00000543744	UNQ6493/PRO21345	Q6UXR8	122 aa	Predicted RBP	11.68	□□□□□ -0.54
PTPN6-222	ENST00000543744	LOC110117498	A0A087WWA1	95 aa		11.67	□□□□□ -0.54
PTPN6-222	ENST00000543744	GHRH	P01286	108 aa		11.66	□□□□□ -0.54
PTPN6-222	ENST00000543744		Q6ZQT0	140 aa		11.66	□□□□□ -0.54
PTPN6-222	ENST00000543744	DSCR8	Q96T75	97 aa		11.64	□□□□□ -0.55
PTPN6-222	ENST00000543744	NKAPP1	Q8N9T2	125 aa		11.63	□□□□□ -0.55
PTPN6-222	ENST00000543744	USP17L23	D6RBM5	183 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	HIST1H4A	P62805	103 aa	Known RBP	11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	LINC00528	Q8N1L1	170 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	RMI2	Q96E14	147 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	UBL5	Q9BZL1	73 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	TLX1NB	P0CAT3	122 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	PDE6G	P18545	87 aa		11.62	□□□□□ -0.55
PTPN6-222	ENST00000543744	CASC10	Q5T4H9	136 aa		11.61	□□□□□ -0.55
PTPN6-222	ENST00000543744	ATP5EP2	Q5VTU8	51 aa		11.61	□□□□□ -0.55
PTPN6-222	ENST00000543744	SERTAD4-AS1	Q5TG53	156 aa		11.6	□□□□□ -0.55
PTPN6-222	ENST00000543744	ATOX1	O00244	68 aa		11.59	□□□□□ -0.55
PTPN6-222	ENST00000543744		A0A087WVE0	104 aa		11.59	□□□□□ -0.55
PTPN6-222	ENST00000543744	C7orf33	Q8WU49	177 aa		11.59	□□□□□ -0.55
PTPN6-222	ENST00000543744	UPK3B	Q9BT76	320 aa		11.59	□□□□□ -0.55
PTPN6-222	ENST00000543744	KCNQ1DN	Q9H478	68 aa		11.59	□□□□□ -0.55
PTPN6-222	ENST00000543744	SS18L2	Q9UHA2	77 aa		11.57	□□□□□ -0.56
PTPN6-222	ENST00000543744	PLA2G2D	Q9UNK4	145 aa		11.57	□□□□□ -0.56
PTPN6-222	ENST00000543744		M0R2N4	97 aa		11.56	□□□□□ -0.56
PTPN6-222	ENST00000543744	HUWE1	Q7Z6Z7	4374 aa	Known RBP	11.56	□□□□□ -0.56
PTPN6-222	ENST00000543744	C3orf22	Q8N5N4	141 aa		11.55	□□□□□ -0.56

Retrieved 100 of 20,778 RNA–protein pairs in 101.4 ms