RNA–Protein interactions for RNA: ENST00000542845.3

LIMS1-214, Transcript of LIM zinc finger domain containing 1, humanhuman

TSL 5

Gene LIMS1, Length 727 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-214ENST00000542845 CHTOPQ9Y3Y2 248 aaKnown RBP2.55□□□□□ -2
LIMS1-214ENST00000542845 FXYD6-FXYD2A0A087WZ82 144 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 KRTAP20-1Q3LI63 56 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 Q5BKY6 102 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 AMN1Q8IY45 258 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 FAM104AQ969W3 186 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 BORCS7Q96B45 105 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 GNB1LQ9BYB4 327 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 CNFNQ9BYD5 112 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 BIN3Q9NQY0 253 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 MED9Q9NWA0 146 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 GNG13Q9P2W3 67 aa2.54□□□□□ -2
LIMS1-214ENST00000542845 F8VRH5 84 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 GATCO43716 136 aaKnown RBP2.53□□□□□ -2
LIMS1-214ENST00000542845 CCL20P78556 96 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 MOBPQ13875 183 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 MBD3L1Q8WWY6 194 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 HIST1H4GQ99525 98 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 TIMM17AQ99595 171 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 SPANXA1Q9NS26 97 aa2.53□□□□□ -2
LIMS1-214ENST00000542845 ZNF706Q9Y5V0 76 aaPredicted RBP2.53□□□□□ -2
LIMS1-214ENST00000542845 M0R378 163 aa2.52□□□□□ -2.01
LIMS1-214ENST00000542845 TCAPO15273 167 aa2.52□□□□□ -2.01
LIMS1-214ENST00000542845 IGLV6-57P01721 117 aa2.52□□□□□ -2.01
LIMS1-214ENST00000542845 MRPS36P82909 103 aaKnown RBP2.52□□□□□ -2.01
LIMS1-214ENST00000542845 Q8IZM0 81 aa2.52□□□□□ -2.01
LIMS1-214ENST00000542845 TMEM191AQ9H0A3 160 aa2.52□□□□□ -2.01
LIMS1-214ENST00000542845 A8MWL6 223 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 K7EN84 100 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 PPP1R17O96001 155 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 IFI27P40305 119 aaPredicted RBP2.51□□□□□ -2.01
LIMS1-214ENST00000542845 RAB14P61106 215 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 HRCT1Q6UXD1 115 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 TEX43Q6ZNM6 134 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 FAM231DQ6ZW35 169 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 LINC01551Q86U37 167 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 AKAP14Q86UN6 197 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 SMCR5Q8TEV8 140 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 SMIM12Q96EX1 92 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 MANBALQ9NQG1 85 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 NEBP20929 6669 aa2.51□□□□□ -2.01
LIMS1-214ENST00000542845 A0A1B0GUT8 65 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 HSBP1O75506 76 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 SNAPINO95295 136 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 CKS2P33552 79 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 PFN2P35080 140 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 KRTAP10-10P60014 251 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 KRTAP10-7P60409 375 aaPredicted RBP2.5□□□□□ -2.01
LIMS1-214ENST00000542845 RPS29P62273 56 aaKnown RBP2.5□□□□□ -2.01
LIMS1-214ENST00000542845 Q1RN00 199 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 SSBP3-AS1Q7Z2R9 100 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 TMEM141Q96I45 108 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 C2orf88Q9BSF0 95 aa2.5□□□□□ -2.01
LIMS1-214ENST00000542845 HIGD1CA8MV81 97 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 PDE6DO43924 150 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 MT2AP02795 61 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 RAB5AP20339 215 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 MRPL51Q4U2R6 128 aaKnown RBP2.49□□□□□ -2.01
LIMS1-214ENST00000542845 C9orf153Q5TBE3 101 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 EIF5A2Q9GZV4 153 aaKnown RBP2.49□□□□□ -2.01
LIMS1-214ENST00000542845 CDKN2A-AS1Q9UH64 79 aa2.49□□□□□ -2.01
LIMS1-214ENST00000542845 LOC389332A0A1B0GUA5 103 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 UMAD1C9J7I0 102 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 ARPC5O15511 151 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 SERF1AO75920 110 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 CXCL5P42830 114 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 CEBPGP53567 150 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 IFITM3Q01628 133 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 FAM19A3Q7Z5A8 133 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 COX7B2Q8TF08 81 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 C20orf78Q9BR46 151 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 SMIM2Q9BVW6 85 aa2.48□□□□□ -2.01
LIMS1-214ENST00000542845 MUC12Q9UKN1 5478 aa2.47□□□□□ -2.01
LIMS1-214ENST00000542845 A0A0J9YXY3 114 aa2.47□□□□□ -2.01
LIMS1-214ENST00000542845 MT1FP04733 61 aa2.47□□□□□ -2.01
LIMS1-214ENST00000542845 RPL37P61927 97 aaKnown RBP2.47□□□□□ -2.01
LIMS1-214ENST00000542845 KRTAP19-6Q3LI70 58 aa2.47□□□□□ -2.01
LIMS1-214ENST00000542845 FAM104BQ5XKR9 115 aa2.47□□□□□ -2.01
LIMS1-214ENST00000542845 ETDCA0A1B0GVM5 59 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 LINC00862A6NCI5 91 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 D6R8Y8 96 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 NPYP01303 97 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 LGALS3P17931 250 aaKnown RBP2.46□□□□□ -2.02
LIMS1-214ENST00000542845 HERVK_113P63121 156 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 Q8NDZ9 215 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 S100ZQ8WXG8 99 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 SND1-IT1Q9HBX3 110 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 BATF3Q9NR55 127 aa2.46□□□□□ -2.02
LIMS1-214ENST00000542845 TRBV24-1A0A075B6N3 115 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 C20orf202A1L168 122 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 SMLR1H3BR10 107 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 SPINK8P0C7L1 97 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 LINC00483Q53H64 154 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 ZNF625Q96I27 306 aaPredicted RBP2.45□□□□□ -2.02
LIMS1-214ENST00000542845 AMELXQ99217 191 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 LIMD2Q9BT23 127 aa2.45□□□□□ -2.02
LIMS1-214ENST00000542845 H7C2G1 150 aa2.44□□□□□ -2.02
LIMS1-214ENST00000542845 ERC2-IT1O76042 136 aa2.44□□□□□ -2.02
LIMS1-214ENST00000542845 MT3P25713 68 aa2.44□□□□□ -2.02
LIMS1-214ENST00000542845 SEC11AP67812 179 aa2.44□□□□□ -2.02
Retrieved 100 of 20,778 RNA–protein pairs in 56.6 ms