RNA–Protein interactions for RNA: ENST00000542274.5

CDH3-203, Transcript of cadherin 3, humanhuman

TSL 2

Gene CDH3, Length 2,746 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDH3-203ENST00000542274 MAST4O15021 2626 aa7.77□□□□□ -1.17
CDH3-203ENST00000542274 HCG22E2RYF7 251 aa7.77□□□□□ -1.17
CDH3-203ENST00000542274 RPL39P62891 51 aaKnown RBP7.77□□□□□ -1.17
CDH3-203ENST00000542274 NDUFA12Q9UI09 145 aa7.77□□□□□ -1.17
CDH3-203ENST00000542274 LINC00315P59091 139 aa7.76□□□□□ -1.17
CDH3-203ENST00000542274 Q5VV11 94 aa7.76□□□□□ -1.17
CDH3-203ENST00000542274 TENM1Q9UKZ4 2725 aa7.76□□□□□ -1.17
CDH3-203ENST00000542274 C4orf3Q8WVX3 66 aa7.76□□□□□ -1.17
CDH3-203ENST00000542274 IGHV1OR15-1A0A075B7D0 117 aa7.75□□□□□ -1.17
CDH3-203ENST00000542274 LINC01554Q52M75 96 aa7.75□□□□□ -1.17
CDH3-203ENST00000542274 UBL5Q9BZL1 73 aa7.75□□□□□ -1.17
CDH3-203ENST00000542274 KIF25-AS1Q9Y6Z4 181 aa7.75□□□□□ -1.17
CDH3-203ENST00000542274 IGHV3-16A0A0C4DH30 117 aa7.74□□□□□ -1.17
CDH3-203ENST00000542274 ATRQ13535 2644 aa7.74□□□□□ -1.17
CDH3-203ENST00000542274 F5H697 171 aa7.74□□□□□ -1.17
CDH3-203ENST00000542274 LINC00337Q8N6G1 96 aa7.74□□□□□ -1.17
CDH3-203ENST00000542274 IGHV3-73A0A0B4J1V6 119 aa7.73□□□□□ -1.17
CDH3-203ENST00000542274 CHKB-CPT1BH3BT56 60 aa7.73□□□□□ -1.17
CDH3-203ENST00000542274 RNASE13Q5GAN3 156 aaKnown RBP7.73□□□□□ -1.17
CDH3-203ENST00000542274 SUMO4Q6EEV6 95 aa7.73□□□□□ -1.17
CDH3-203ENST00000542274 NREPQ16612 68 aa7.73□□□□□ -1.17
CDH3-203ENST00000542274 C1orf64Q8NEQ6 169 aa7.73□□□□□ -1.17
CDH3-203ENST00000542274 C11orf72Q8NBR9 251 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 VWFP04275 2813 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 PROK1P58294 105 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 KRTAP10-3P60369 221 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 MIR7-3HGQ8N6C7 128 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 MED14OSP0DP75 135 aa7.72□□□□□ -1.17
CDH3-203ENST00000542274 MP68P56378 58 aa7.71□□□□□ -1.18
CDH3-203ENST00000542274 MAP6D1Q9H9H5 199 aa7.71□□□□□ -1.18
CDH3-203ENST00000542274 A0A0J9YXV3 536 aa7.71□□□□□ -1.18
CDH3-203ENST00000542274 DEFB114Q30KQ6 69 aa7.71□□□□□ -1.18
CDH3-203ENST00000542274 A0A087WYN8 130 aa7.7□□□□□ -1.18
CDH3-203ENST00000542274 Q8N3U1 123 aa7.7□□□□□ -1.18
CDH3-203ENST00000542274 ERC2-IT1O76042 136 aa7.7□□□□□ -1.18
CDH3-203ENST00000542274 TRRAPQ9Y4A5 3859 aa7.69□□□□□ -1.18
CDH3-203ENST00000542274 WFDC10AQ9H1F0 79 aa7.69□□□□□ -1.18
CDH3-203ENST00000542274 ODF3L2Q3SX64 289 aa7.68□□□□□ -1.18
CDH3-203ENST00000542274 LINC00308Q8TCZ7 52 aa7.68□□□□□ -1.18
CDH3-203ENST00000542274 IGHV3OR16-12A0A075B7B8 117 aa7.68□□□□□ -1.18
CDH3-203ENST00000542274 POLR2KP53803 58 aaKnown RBP7.67□□□□□ -1.18
CDH3-203ENST00000542274 M0QY20 66 aa7.67□□□□□ -1.18
CDH3-203ENST00000542274 LINC01547P58512 204 aaPredicted RBP7.67□□□□□ -1.18
CDH3-203ENST00000542274 ZNF706Q9Y5V0 76 aaPredicted RBP7.67□□□□□ -1.18
CDH3-203ENST00000542274 PSCAO43653 123 aa7.66□□□□□ -1.18
CDH3-203ENST00000542274 CXCL6P80162 114 aa7.66□□□□□ -1.18
CDH3-203ENST00000542274 HAMPP81172 84 aa7.66□□□□□ -1.18
CDH3-203ENST00000542274 Q6ZSN1 163 aa7.66□□□□□ -1.18
CDH3-203ENST00000542274 PRAC1Q96KF2 57 aa7.65□□□□□ -1.18
CDH3-203ENST00000542274 Q6ZTI0 123 aa7.65□□□□□ -1.19
CDH3-203ENST00000542274 HIGD2AQ9BW72 106 aa7.65□□□□□ -1.19
CDH3-203ENST00000542274 NBEAL2Q6ZNJ1 2754 aa7.64□□□□□ -1.19
CDH3-203ENST00000542274 ORMDL1Q9P0S3 153 aa7.64□□□□□ -1.19
CDH3-203ENST00000542274 SLPIP03973 132 aa7.64□□□□□ -1.19
CDH3-203ENST00000542274 IGKV2-29A2NJV5 120 aaPredicted RBP7.63□□□□□ -1.19
CDH3-203ENST00000542274 A8MTW9 85 aa7.63□□□□□ -1.19
CDH3-203ENST00000542274 LECT2O14960 151 aa7.63□□□□□ -1.19
CDH3-203ENST00000542274 H0Y9J4 135 aa7.63□□□□□ -1.19
CDH3-203ENST00000542274 PPP1R17O96001 155 aa7.63□□□□□ -1.19
CDH3-203ENST00000542274 BPY2O14599 106 aa7.62□□□□□ -1.19
CDH3-203ENST00000542274 STAB1Q9NY15 2570 aa7.62□□□□□ -1.19
CDH3-203ENST00000542274 IGHV3-38A0A0C4DH36 116 aa7.61□□□□□ -1.19
CDH3-203ENST00000542274 A6NED7 52 aa7.61□□□□□ -1.19
CDH3-203ENST00000542274 NANOS2P60321 138 aaKnown RBP7.61□□□□□ -1.19
CDH3-203ENST00000542274 JMJD7-PLA2G4BH0Y9G9 81 aa7.61□□□□□ -1.19
CDH3-203ENST00000542274 TRBV6-8A0A0A6YYG3 113 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 TRBV6-5A0A0K0K1A5 114 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 TRBV10-1A0A0K0K1A3 114 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 INSP01308 110 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 IGHV3-53P01767 116 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 MOBPQ13875 183 aa7.6□□□□□ -1.19
CDH3-203ENST00000542274 FBN1P35555 2871 aaKnown RBP7.6□□□□□ -1.19
CDH3-203ENST00000542274 PRR15LQ9BU68 103 aa7.58□□□□□ -1.2
CDH3-203ENST00000542274 PRB2P02812 416 aaPredicted RBP7.58□□□□□ -1.2
CDH3-203ENST00000542274 GIG44P09565 113 aaPredicted RBP7.58□□□□□ -1.2
CDH3-203ENST00000542274 C6orf99Q4VX62 202 aa7.58□□□□□ -1.2
CDH3-203ENST00000542274 CDC42SE1Q9NRR8 79 aa7.58□□□□□ -1.2
CDH3-203ENST00000542274 IGLV4-3A0A075B6K6 122 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 TRGV1A0A0A0MS02 117 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 H0YGX0 51 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 IGLV1-51P01701 117 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 C9orf116Q5BN46 136 aaPredicted RBP7.57□□□□□ -1.2
CDH3-203ENST00000542274 C20orf203Q8NBC4 194 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 FAM104AQ969W3 186 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 CYP4F30PQ9H0H9 118 aa7.57□□□□□ -1.2
CDH3-203ENST00000542274 IGKV2D-29A0A075B6S2 120 aaPredicted RBP7.56□□□□□ -1.2
CDH3-203ENST00000542274 NDUFA1O15239 70 aa7.56□□□□□ -1.2
CDH3-203ENST00000542274 CRPP02741 224 aa7.56□□□□□ -1.2
CDH3-203ENST00000542274 C19orf73Q9NVV2 129 aa7.56□□□□□ -1.2
CDH3-203ENST00000542274 RPL36AP83881 106 aaKnown RBP7.56□□□□□ -1.2
CDH3-203ENST00000542274 SMIM11BQ8TCY0 68 aa7.56□□□□□ -1.2
CDH3-203ENST00000542274 RPL36ALQ969Q0 106 aaKnown RBP7.56□□□□□ -1.2
CDH3-203ENST00000542274 KRTAP24-1Q3LI83 254 aa7.55□□□□□ -1.2
CDH3-203ENST00000542274 LIMD2Q9BT23 127 aa7.55□□□□□ -1.2
CDH3-203ENST00000542274 OCR1Q9BZK8 76 aa7.55□□□□□ -1.2
CDH3-203ENST00000542274 LOC100131303A0A0U1RQF7 123 aa7.55□□□□□ -1.2
CDH3-203ENST00000542274 COL6A5A8TX70 2615 aa7.55□□□□□ -1.2
CDH3-203ENST00000542274 SCXQ7RTU7 201 aa7.54□□□□□ -1.2
CDH3-203ENST00000542274 NOP10Q9NPE3 64 aaKnown RBP7.54□□□□□ -1.2
CDH3-203ENST00000542274 KIAA0087Q14695 138 aa7.53□□□□□ -1.2
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms