RNA–Protein interactions for RNA: ENST00000540925.5

USP28-209, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 4

Gene USP28, Length 561 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-209ENST00000540925 HIST1H2BOP23527 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BBP33778 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BDP58876 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BCP62807 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST2H2BEQ16778 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST2H2BFQ5QNW6 126 aaPredicted RBP8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BHQ93079 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BNQ99877 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 HIST1H2BMQ99879 126 aa8.49□□□□□ -1.05
USP28-209ENST00000540925 FABP4P15090 132 aa8.48□□□□□ -1.05
USP28-209ENST00000540925 PLNP26678 52 aa8.48□□□□□ -1.05
USP28-209ENST00000540925 TSPEAR-AS2P59090 65 aa8.48□□□□□ -1.05
USP28-209ENST00000540925 H0Y8G0 127 aa8.47□□□□□ -1.05
USP28-209ENST00000540925 RPL28P46779 137 aaKnown RBP8.47□□□□□ -1.05
USP28-209ENST00000540925 HERV-K104P63124 156 aa8.47□□□□□ -1.05
USP28-209ENST00000540925 RPL24P83731 157 aaKnown RBP8.47□□□□□ -1.05
USP28-209ENST00000540925 IGKV2-28A0A075B6P5 120 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 DPM2O94777 84 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 IGKV2D-28P01615 120 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 SMIM13P0DJ93 91 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 LINC00158P58513 81 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 NDUFA12Q9UI09 145 aa8.46□□□□□ -1.06
USP28-209ENST00000540925 LEPROTO15243 131 aa8.45□□□□□ -1.06
USP28-209ENST00000540925 PMCHL2Q9BQD1 86 aa8.45□□□□□ -1.06
USP28-209ENST00000540925 A0A0U1RRA0 63 aa8.44□□□□□ -1.06
USP28-209ENST00000540925 M0R378 163 aa8.44□□□□□ -1.06
USP28-209ENST00000540925 IGKCP01834 107 aa8.44□□□□□ -1.06
USP28-209ENST00000540925 TMEM126AQ9H061 195 aa8.44□□□□□ -1.06
USP28-209ENST00000540925 LPAP08519 4548 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 LOC107984156A0A0G2JMH3 177 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 MYMXA0A1B0GTQ4 84 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 TMEM238C9JI98 176 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 ARL17AQ8IVW1 177 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 MIR7-3HGQ8N6C7 128 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 PLEKHB2Q96CS7 222 aa8.43□□□□□ -1.06
USP28-209ENST00000540925 LINC00587B1AMM8 73 aa8.42□□□□□ -1.06
USP28-209ENST00000540925 J3QQQ9 107 aa8.42□□□□□ -1.06
USP28-209ENST00000540925 RPL13AP40429 203 aaKnown RBP8.42□□□□□ -1.06
USP28-209ENST00000540925 COA6Q5JTJ3 125 aaKnown RBP8.42□□□□□ -1.06
USP28-209ENST00000540925 MAP1LC3CQ9BXW4 147 aa8.42□□□□□ -1.06
USP28-209ENST00000540925 A0A087X002 238 aa8.41□□□□□ -1.06
USP28-209ENST00000540925 SYS1-DBNDD2H3BUS1 97 aa8.41□□□□□ -1.06
USP28-209ENST00000540925 MEIG1Q5JSS6 88 aa8.41□□□□□ -1.06
USP28-209ENST00000540925 NMUP48645 174 aa8.4□□□□□ -1.06
USP28-209ENST00000540925 UBE2AP49459 152 aa8.4□□□□□ -1.06
USP28-209ENST00000540925 HERVK_113P61574 105 aa8.39□□□□□ -1.07
USP28-209ENST00000540925 LINC01545Q5VT33 79 aa8.39□□□□□ -1.07
USP28-209ENST00000540925 BOD1L2Q8IYS8 172 aa8.39□□□□□ -1.07
USP28-209ENST00000540925 IGKV2D-26A0A0A0MRZ7 120 aa8.38□□□□□ -1.07
USP28-209ENST00000540925 E9PLD3 99 aa8.38□□□□□ -1.07
USP28-209ENST00000540925 PRLHP81277 87 aa8.38□□□□□ -1.07
USP28-209ENST00000540925 ATP6V1G1O75348 118 aa8.37□□□□□ -1.07
USP28-209ENST00000540925 SPRR1AP35321 89 aa8.37□□□□□ -1.07
USP28-209ENST00000540925 FAM19A1Q7Z5A9 133 aa8.37□□□□□ -1.07
USP28-209ENST00000540925 DAND5Q8N907 189 aa8.37□□□□□ -1.07
USP28-209ENST00000540925 KCNQ1DNQ9H478 68 aa8.37□□□□□ -1.07
USP28-209ENST00000540925 KRTAP4-16G5E9R7 235 aaPredicted RBP8.36□□□□□ -1.07
USP28-209ENST00000540925 LGALS3P17931 250 aaKnown RBP8.36□□□□□ -1.07
USP28-209ENST00000540925 FAM229BQ4G0N7 80 aa8.36□□□□□ -1.07
USP28-209ENST00000540925 KRTAP13-2Q52LG2 175 aa8.36□□□□□ -1.07
USP28-209ENST00000540925 PET117Q6UWS5 81 aa8.36□□□□□ -1.07
USP28-209ENST00000540925 ANAPC11Q9NYG5 84 aa8.36□□□□□ -1.07
USP28-209ENST00000540925 PRYO14603 147 aa8.35□□□□□ -1.07
USP28-209ENST00000540925 NCR3O14931 201 aa8.35□□□□□ -1.07
USP28-209ENST00000540925 CRYGAP11844 174 aa8.35□□□□□ -1.07
USP28-209ENST00000540925 A0A0J9YXY3 114 aa8.34□□□□□ -1.07
USP28-209ENST00000540925 C3orf79P0CE67 100 aa8.34□□□□□ -1.07
USP28-209ENST00000540925 TRBV10-3A0A0K0K1G6 114 aa8.33□□□□□ -1.08
USP28-209ENST00000540925 TRBV10-2A0A0K0K1G8 114 aa8.33□□□□□ -1.08
USP28-209ENST00000540925 EIF4EBP3O60516 100 aaPredicted RBP8.33□□□□□ -1.08
USP28-209ENST00000540925 ADAMTSL4-AS1Q5T5F5 129 aa8.33□□□□□ -1.08
USP28-209ENST00000540925 LINC00337Q8N6G1 96 aa8.33□□□□□ -1.08
USP28-209ENST00000540925 NDUFC2O95298 119 aa8.32□□□□□ -1.08
USP28-209ENST00000540925 SOSTDC1Q6X4U4 206 aa8.32□□□□□ -1.08
USP28-209ENST00000540925 LITAFQ99732 161 aa8.32□□□□□ -1.08
USP28-209ENST00000540925 TYMSOSQ8TAI1 123 aa8.31□□□□□ -1.08
USP28-209ENST00000540925 SPANXB1Q9NS25 103 aaPredicted RBP8.3□□□□□ -1.08
USP28-209ENST00000540925 IGLV6-57P01721 117 aa8.29□□□□□ -1.08
USP28-209ENST00000540925 HIGD2AQ9BW72 106 aa8.29□□□□□ -1.08
USP28-209ENST00000540925 TIMM17BO60830 172 aa8.28□□□□□ -1.08
USP28-209ENST00000540925 SMCR5Q8TEV8 140 aa8.28□□□□□ -1.08
USP28-209ENST00000540925 SPRR4Q96PI1 79 aa8.28□□□□□ -1.08
USP28-209ENST00000540925 B5MCH6 92 aa8.27□□□□□ -1.09
USP28-209ENST00000540925 DDTP30046 118 aa8.27□□□□□ -1.09
USP28-209ENST00000540925 KRTDAPP60985 99 aa8.27□□□□□ -1.09
USP28-209ENST00000540925 TTTY13Q9BZ97 58 aa8.27□□□□□ -1.09
USP28-209ENST00000540925 MIEN1Q9BRT3 115 aa8.26□□□□□ -1.09
USP28-209ENST00000540925 ETDCA0A1B0GVM5 59 aa8.25□□□□□ -1.09
USP28-209ENST00000540925 S100A1P23297 94 aa8.25□□□□□ -1.09
USP28-209ENST00000540925 ZNF815PA8K554 130 aa8.24□□□□□ -1.09
USP28-209ENST00000540925 NPC2P61916 151 aa8.24□□□□□ -1.09
USP28-209ENST00000540925 C3orf22Q8N5N4 141 aa8.24□□□□□ -1.09
USP28-209ENST00000540925 LINC00308Q8TCZ7 52 aa8.24□□□□□ -1.09
USP28-209ENST00000540925 Q9BRP9 147 aa8.24□□□□□ -1.09
USP28-209ENST00000540925 TSPAN13O95857 204 aa8.23□□□□□ -1.09
USP28-209ENST00000540925 CTAG1AP78358 180 aa8.23□□□□□ -1.09
USP28-209ENST00000540925 LINC00483Q53H64 154 aa8.23□□□□□ -1.09
USP28-209ENST00000540925 ANKRD39Q53RE8 183 aa8.23□□□□□ -1.09
USP28-209ENST00000540925 Q6ZRX8 168 aa8.23□□□□□ -1.09
USP28-209ENST00000540925 LINC00304Q8N9R0 145 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 93.9 ms