RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 PRAC1Q96KF2 57 aa6□□□□□ -1.45
YBX3-208ENST00000540447 OTOGLQ3ZCN5 2332 aa6□□□□□ -1.45
YBX3-208ENST00000540447 PLA2G1BP04054 148 aaKnown RBP6□□□□□ -1.45
YBX3-208ENST00000540447 C9orf129Q5T035 196 aaKnown RBP6□□□□□ -1.45
YBX3-208ENST00000540447 Q75L30 129 aa5.99□□□□□ -1.45
YBX3-208ENST00000540447 ATRXP46100 2492 aa5.99□□□□□ -1.45
YBX3-208ENST00000540447 MOBPQ13875 183 aa5.99□□□□□ -1.45
YBX3-208ENST00000540447 PTPRQQ9UMZ3 2332 aa5.99□□□□□ -1.45
YBX3-208ENST00000540447 C11orf71Q6IPW1 123 aa5.99□□□□□ -1.45
YBX3-208ENST00000540447 CUL9Q8IWT3 2517 aa5.98□□□□□ -1.45
YBX3-208ENST00000540447 LRP4O75096 1905 aa5.98□□□□□ -1.45
YBX3-208ENST00000540447 LINC00313P59037 77 aa5.98□□□□□ -1.45
YBX3-208ENST00000540447 MUC4Q99102 2169 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 OXTP01178 125 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 PLA2G2CQ5R387 149 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 Q6ZRX8 168 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 C1orf134Q5TEV5 83 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 LINC00588Q9Y4M8 146 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 EPM2AB3EWF7 344 aa5.97□□□□□ -1.45
YBX3-208ENST00000540447 ST20-AS1Q8NBB2 130 aa5.96□□□□□ -1.45
YBX3-208ENST00000540447 IGLV6-57P01721 117 aa5.96□□□□□ -1.46
YBX3-208ENST00000540447 LINC00167Q96N53 147 aa5.96□□□□□ -1.46
YBX3-208ENST00000540447 EP400Q96L91 3159 aa5.96□□□□□ -1.46
YBX3-208ENST00000540447 Q6ZRP5 223 aa5.96□□□□□ -1.46
YBX3-208ENST00000540447 CPAMD8Q8IZJ3 1885 aa5.95□□□□□ -1.46
YBX3-208ENST00000540447 A0A1W2PNU3 283 aaPredicted RBP5.95□□□□□ -1.46
YBX3-208ENST00000540447 AVPP01185 164 aa5.95□□□□□ -1.46
YBX3-208ENST00000540447 OCR1Q9BZK8 76 aa5.94□□□□□ -1.46
YBX3-208ENST00000540447 C16orf90A8MZG2 172 aa5.94□□□□□ -1.46
YBX3-208ENST00000540447 LINC01556Q5JQF7 62 aa5.94□□□□□ -1.46
YBX3-208ENST00000540447 MRPL34Q9BQ48 92 aaKnown RBP5.94□□□□□ -1.46
YBX3-208ENST00000540447 OBSCN-AS1Q96MR7 158 aa5.93□□□□□ -1.46
YBX3-208ENST00000540447 GPR179Q6PRD1 2367 aa5.92□□□□□ -1.46
YBX3-208ENST00000540447 Q5VV11 94 aa5.91□□□□□ -1.46
YBX3-208ENST00000540447 IGLV1-51P01701 117 aa5.91□□□□□ -1.46
YBX3-208ENST00000540447 Q8N9P0 234 aaPredicted RBP5.9□□□□□ -1.46
YBX3-208ENST00000540447 CSAG1Q6PB30 78 aa5.9□□□□□ -1.47
YBX3-208ENST00000540447 APLNQ9ULZ1 77 aa5.9□□□□□ -1.47
YBX3-208ENST00000540447 FAM229AH3BQW9 127 aa5.89□□□□□ -1.47
YBX3-208ENST00000540447 LUZP6Q538Z0 58 aa5.89□□□□□ -1.47
YBX3-208ENST00000540447 M0R2N4 97 aa5.89□□□□□ -1.47
YBX3-208ENST00000540447 Q8NA96 180 aa5.89□□□□□ -1.47
YBX3-208ENST00000540447 SPG11Q96JI7 2443 aa5.89□□□□□ -1.47
YBX3-208ENST00000540447 COL4A4P53420 1690 aaPredicted RBP5.89□□□□□ -1.47
YBX3-208ENST00000540447 LINC00528Q8N1L1 170 aa5.88□□□□□ -1.47
YBX3-208ENST00000540447 ZNF462Q96JM2 2506 aa5.88□□□□□ -1.47
YBX3-208ENST00000540447 ANKHD1Q8IWZ3 2542 aaKnown RBP5.87□□□□□ -1.47
YBX3-208ENST00000540447 C8orf17Q9NRJ1 99 aa5.87□□□□□ -1.47
YBX3-208ENST00000540447 RAI1Q7Z5J4 1906 aaPredicted RBP5.87□□□□□ -1.47
YBX3-208ENST00000540447 LINC01558Q9Y6Z2 57 aa5.86□□□□□ -1.47
YBX3-208ENST00000540447 GVQW2A0A096LPI5 108 aaPredicted RBP5.86□□□□□ -1.47
YBX3-208ENST00000540447 C9orf163Q8N9P6 203 aa5.86□□□□□ -1.47
YBX3-208ENST00000540447 IGFL1Q6UW32 110 aa5.85□□□□□ -1.47
YBX3-208ENST00000540447 A0A0A0MQY5 61 aa5.85□□□□□ -1.47
YBX3-208ENST00000540447 PHF5AQ7RTV0 110 aaKnown RBP5.84□□□□□ -1.47
YBX3-208ENST00000540447 PRR26Q8N8Z3 221 aa5.84□□□□□ -1.47
YBX3-208ENST00000540447 Q8N377 158 aa5.84□□□□□ -1.47
YBX3-208ENST00000540447 PRO3102Q9H379 93 aa5.84□□□□□ -1.47
YBX3-208ENST00000540447 KCNQ1DNQ9H478 68 aa5.83□□□□□ -1.48
YBX3-208ENST00000540447 RIF1Q5UIP0 2472 aaKnown RBP5.82□□□□□ -1.48
YBX3-208ENST00000540447 IGLV7-46A0A075B6I9 117 aa5.82□□□□□ -1.48
YBX3-208ENST00000540447 FAM104AQ969W3 186 aa5.82□□□□□ -1.48
YBX3-208ENST00000540447 SPACA4Q8TDM5 124 aa5.82□□□□□ -1.48
YBX3-208ENST00000540447 DMAC1Q96GE9 116 aa5.81□□□□□ -1.48
YBX3-208ENST00000540447 A0A1B0GVX0 72 aa5.8□□□□□ -1.48
YBX3-208ENST00000540447 SPINK7P58062 85 aa5.8□□□□□ -1.48
YBX3-208ENST00000540447 A0A1W2PNM2 257 aa5.79□□□□□ -1.48
YBX3-208ENST00000540447 PTPN13Q12923 2485 aa5.78□□□□□ -1.48
YBX3-208ENST00000540447 KRTAP16-1A8MUX0 517 aa5.78□□□□□ -1.48
YBX3-208ENST00000540447 IGLV1-50A0A075B6I6 118 aa5.77□□□□□ -1.49
YBX3-208ENST00000540447 J3QKU1 62 aa5.77□□□□□ -1.49
YBX3-208ENST00000540447 C16orf95Q9H693 158 aa5.77□□□□□ -1.49
YBX3-208ENST00000540447 A0A0G2JQZ4 141 aa5.77□□□□□ -1.49
YBX3-208ENST00000540447 A0A1W2PNN7 141 aa5.77□□□□□ -1.49
YBX3-208ENST00000540447 IGLV5-52A0A0A0MRZ9 124 aa5.76□□□□□ -1.49
YBX3-208ENST00000540447 NUPR2A6NF83 97 aa5.76□□□□□ -1.49
YBX3-208ENST00000540447 Q96NJ1 140 aa5.76□□□□□ -1.49
YBX3-208ENST00000540447 SONP18583 2426 aaKnown RBP5.76□□□□□ -1.49
YBX3-208ENST00000540447 FAM208BQ5VWN6 2430 aa5.76□□□□□ -1.49
YBX3-208ENST00000540447 Q8NAQ8 132 aa5.75□□□□□ -1.49
YBX3-208ENST00000540447 FAM168BA1KXE4 195 aa5.75□□□□□ -1.49
YBX3-208ENST00000540447 A0A0D9SG42 100 aa5.74□□□□□ -1.49
YBX3-208ENST00000540447 DSCR10P59022 87 aa5.74□□□□□ -1.49
YBX3-208ENST00000540447 MUC22E2RYF6 1773 aaPredicted RBP5.74□□□□□ -1.49
YBX3-208ENST00000540447 PCNTO95613 3336 aa5.74□□□□□ -1.49
YBX3-208ENST00000540447 ASB16-AS1Q495Z4 193 aa5.73□□□□□ -1.49
YBX3-208ENST00000540447 PCSK5Q92824 1860 aa5.73□□□□□ -1.49
YBX3-208ENST00000540447 IGLV5-48A0A075B6I7 105 aa5.73□□□□□ -1.49
YBX3-208ENST00000540447 CHTF8P0CG12 524 aa5.72□□□□□ -1.49
YBX3-208ENST00000540447 HIVEP2P31629 2446 aa5.72□□□□□ -1.49
YBX3-208ENST00000540447 A0A1B0GU33 70 aa5.69□□□□□ -1.5
YBX3-208ENST00000540447 C15orf56Q8N910 161 aa5.69□□□□□ -1.5
YBX3-208ENST00000540447 RTL8CO15255 209 aa5.69□□□□□ -1.5
YBX3-208ENST00000540447 HRES1P13985 223 aa5.69□□□□□ -1.5
YBX3-208ENST00000540447 A6NN06 94 aa5.68□□□□□ -1.5
YBX3-208ENST00000540447 TLX1NBP0CAT3 122 aa5.68□□□□□ -1.5
YBX3-208ENST00000540447 KLK9Q2XQG4 91 aa5.67□□□□□ -1.5
YBX3-208ENST00000540447 H3BNG1 76 aa5.67□□□□□ -1.5
YBX3-208ENST00000540447 A0A096LNT2 108 aa5.66□□□□□ -1.5
YBX3-208ENST00000540447 SPRR4Q96PI1 79 aa5.66□□□□□ -1.5
Retrieved 100 of 20,778 RNA–protein pairs in 69.5 ms