RNA–Protein interactions for RNA: ENST00000539204.5

YBX3-207, Transcript of Y-box binding protein 3, humanhuman

TSL 3

Gene YBX3, Length 649 nt, Biotype processed transcript, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-207ENST00000539204 PLNP26678 52 aa6.97□□□□□ -1.29
YBX3-207ENST00000539204 KRTAP9-7A8MTY7 169 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 F8VRH5 84 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 DLEU1O43261 78 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 COX8AP10176 69 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 PMVKQ15126 192 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 PAPPA-AS1Q5QFB9 102 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 SLC25A34Q6PIV7 304 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 LINC00304Q8N9R0 145 aa6.96□□□□□ -1.3
YBX3-207ENST00000539204 TRAV13-1A0A0B4J241 112 aa6.95□□□□□ -1.3
YBX3-207ENST00000539204 NDUFA1O15239 70 aa6.95□□□□□ -1.3
YBX3-207ENST00000539204 RPL39P62891 51 aaKnown RBP6.95□□□□□ -1.3
YBX3-207ENST00000539204 CTAG1AP78358 180 aa6.95□□□□□ -1.3
YBX3-207ENST00000539204 LINC00337Q8N6G1 96 aa6.95□□□□□ -1.3
YBX3-207ENST00000539204 TIMM21Q9BVV7 248 aa6.95□□□□□ -1.3
YBX3-207ENST00000539204 CHTOPQ9Y3Y2 248 aaKnown RBP6.95□□□□□ -1.3
YBX3-207ENST00000539204 M0R143 59 aa6.94□□□□□ -1.3
YBX3-207ENST00000539204 ASB16-AS1Q495Z4 193 aa6.94□□□□□ -1.3
YBX3-207ENST00000539204 ANKRD39Q53RE8 183 aa6.94□□□□□ -1.3
YBX3-207ENST00000539204 C10orf25Q5T742 122 aa6.94□□□□□ -1.3
YBX3-207ENST00000539204 CST9LQ9H4G1 147 aa6.94□□□□□ -1.3
YBX3-207ENST00000539204 RPL28P46779 137 aaKnown RBP6.93□□□□□ -1.3
YBX3-207ENST00000539204 UNQ6190/PRO20217Q6UXQ8 127 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 BOD1L2Q8IYS8 172 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 ORAOV1Q8WV07 137 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 C2orf88Q9BSF0 95 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 KRTAP4-1Q9BYQ7 146 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 SPANXA1Q9NS26 97 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 ANAPC11Q9NYG5 84 aa6.93□□□□□ -1.3
YBX3-207ENST00000539204 KRTAP13-2Q52LG2 175 aa6.92□□□□□ -1.3
YBX3-207ENST00000539204 ZC2HC1BQ5TFG8 222 aa6.92□□□□□ -1.3
YBX3-207ENST00000539204 AMELXQ99217 191 aa6.92□□□□□ -1.3
YBX3-207ENST00000539204 SNHG12Q9BXW3 62 aa6.92□□□□□ -1.3
YBX3-207ENST00000539204 C6orf48Q9UBA6 75 aa6.92□□□□□ -1.3
YBX3-207ENST00000539204 IGLV4-3A0A075B6K6 122 aa6.91□□□□□ -1.3
YBX3-207ENST00000539204 MRPS36P82909 103 aaKnown RBP6.91□□□□□ -1.3
YBX3-207ENST00000539204 SMAGPQ0VAQ4 97 aa6.91□□□□□ -1.3
YBX3-207ENST00000539204 RNASE13Q5GAN3 156 aaKnown RBP6.91□□□□□ -1.3
YBX3-207ENST00000539204 FAM104AQ969W3 186 aa6.91□□□□□ -1.3
YBX3-207ENST00000539204 CSDC2Q9Y534 153 aaKnown RBP6.91□□□□□ -1.3
YBX3-207ENST00000539204 SEC61BP60468 96 aaKnown RBP6.9□□□□□ -1.3
YBX3-207ENST00000539204 C9orf129Q5T035 196 aaKnown RBP6.9□□□□□ -1.3
YBX3-207ENST00000539204 VCX2Q9H322 139 aa6.9□□□□□ -1.3
YBX3-207ENST00000539204 UBE2D4Q9Y2X8 147 aa6.9□□□□□ -1.3
YBX3-207ENST00000539204 C11orf86A6NJI1 115 aa6.89□□□□□ -1.31
YBX3-207ENST00000539204 E9PLD3 99 aa6.89□□□□□ -1.31
YBX3-207ENST00000539204 CFC1BP0CG36 223 aa6.89□□□□□ -1.31
YBX3-207ENST00000539204 HIGD1BQ9P298 99 aa6.89□□□□□ -1.31
YBX3-207ENST00000539204 C22orf24Q9Y442 160 aa6.89□□□□□ -1.31
YBX3-207ENST00000539204 IGKV2D-26A0A0A0MRZ7 120 aa6.88□□□□□ -1.31
YBX3-207ENST00000539204 NDUFC2-KCTD14E9PQ53 114 aa6.88□□□□□ -1.31
YBX3-207ENST00000539204 C2orf91Q6ZV80 131 aa6.88□□□□□ -1.31
YBX3-207ENST00000539204 KRTAP9-1A8MXZ3 250 aaPredicted RBP6.87□□□□□ -1.31
YBX3-207ENST00000539204 BCE1O60756 84 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 NMUP48645 174 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 HERVK_113P61574 105 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 FAM229BQ4G0N7 80 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 LINC00242Q5T6M2 205 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 FAM19A3Q7Z5A8 133 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 PCP2Q8IVA1 136 aa6.87□□□□□ -1.31
YBX3-207ENST00000539204 IGHV3OR16-9A0A0B4J2B5 98 aa6.86□□□□□ -1.31
YBX3-207ENST00000539204 TRBV30A0A0K0K1B3 111 aa6.86□□□□□ -1.31
YBX3-207ENST00000539204 COL5A1-AS1Q5SY13 56 aa6.86□□□□□ -1.31
YBX3-207ENST00000539204 LCE2CQ5TA81 110 aa6.86□□□□□ -1.31
YBX3-207ENST00000539204 TINCRA0A1B0GVN0 87 aa6.85□□□□□ -1.31
YBX3-207ENST00000539204 FP248Q71RG6 208 aaPredicted RBP6.85□□□□□ -1.31
YBX3-207ENST00000539204 TMEM223A0PJW6 202 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 ZNF22P17026 224 aaPredicted RBP6.84□□□□□ -1.31
YBX3-207ENST00000539204 HINT1P49773 126 aaPredicted RBP6.84□□□□□ -1.31
YBX3-207ENST00000539204 HSD52Q0P140 79 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 TAL2Q16559 108 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 KRTAP13-3Q3SY46 172 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 BVES-AS1Q5T3Y7 98 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 Q6ZUT4 128 aa6.84□□□□□ -1.31
YBX3-207ENST00000539204 MYMXA0A1B0GTQ4 84 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 LEPROTO15243 131 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 SEC11AP67812 179 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 KIAA0087Q14695 138 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 TMEM170BQ5T4T1 132 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 TP73-AS1Q9UF72 201 aa6.83□□□□□ -1.32
YBX3-207ENST00000539204 IGLV5-45A0A087WSX0 123 aa6.82□□□□□ -1.32
YBX3-207ENST00000539204 MT1HP80294 61 aa6.82□□□□□ -1.32
YBX3-207ENST00000539204 PLEKHB2Q96CS7 222 aa6.82□□□□□ -1.32
YBX3-207ENST00000539204 SPAG11AQ6PDA7 123 aa6.81□□□□□ -1.32
YBX3-207ENST00000539204 C2orf82Q6UX34 121 aa6.81□□□□□ -1.32
YBX3-207ENST00000539204 MRPL55Q7Z7F7 128 aaKnown RBP6.81□□□□□ -1.32
YBX3-207ENST00000539204 TTTY13Q9BZ97 58 aa6.81□□□□□ -1.32
YBX3-207ENST00000539204 J3QQQ9 107 aa6.8□□□□□ -1.32
YBX3-207ENST00000539204 LORP23490 312 aaPredicted RBP6.8□□□□□ -1.32
YBX3-207ENST00000539204 HERVK_113P63121 156 aa6.8□□□□□ -1.32
YBX3-207ENST00000539204 BATFQ16520 125 aa6.8□□□□□ -1.32
YBX3-207ENST00000539204 LINC00469Q8N7U9 141 aa6.8□□□□□ -1.32
YBX3-207ENST00000539204 A0A1B0GV90 55 aa6.79□□□□□ -1.32
YBX3-207ENST00000539204 ZNF815PA8K554 130 aa6.79□□□□□ -1.32
YBX3-207ENST00000539204 H3BRM9 83 aa6.79□□□□□ -1.32
YBX3-207ENST00000539204 UBE2AP49459 152 aa6.79□□□□□ -1.32
YBX3-207ENST00000539204 GEMIN7Q9H840 131 aaKnown RBP6.79□□□□□ -1.32
YBX3-207ENST00000539204 XAGE1AQ9HD64 81 aa6.79□□□□□ -1.32
YBX3-207ENST00000539204 A6NDN8 102 aa6.78□□□□□ -1.32
YBX3-207ENST00000539204 RPL37AP8A6NKH3 93 aa6.78□□□□□ -1.32
Retrieved 100 of 20,778 RNA–protein pairs in 31.3 ms