RNA–Protein interactions for RNA: ENST00000538686.6

USP3-203, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 1 (best)

Gene USP3, Length 2,077 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-203ENST00000538686 WFDC10AQ9H1F0 79 aa8.23□□□□□ -1.09
USP3-203ENST00000538686 ANKHD1Q8IWZ3 2542 aaKnown RBP8.22□□□□□ -1.09
USP3-203ENST00000538686 SPAG11BQ08648 103 aa8.22□□□□□ -1.09
USP3-203ENST00000538686 ADGRG4Q8IZF6 3080 aa8.22□□□□□ -1.09
USP3-203ENST00000538686 SLURP1P55000 103 aa8.21□□□□□ -1.1
USP3-203ENST00000538686 DSCR10P59022 87 aa8.21□□□□□ -1.1
USP3-203ENST00000538686 CLPSL2Q6UWE3 100 aa8.21□□□□□ -1.1
USP3-203ENST00000538686 PRB2P02812 416 aaPredicted RBP8.2□□□□□ -1.1
USP3-203ENST00000538686 DSCR9P59020 149 aa8.2□□□□□ -1.1
USP3-203ENST00000538686 KHDC1LQ5JSQ8 128 aa8.2□□□□□ -1.1
USP3-203ENST00000538686 UNQ6190/PRO20217Q6UXQ8 127 aa8.2□□□□□ -1.1
USP3-203ENST00000538686 ODF3L2Q3SX64 289 aa8.19□□□□□ -1.1
USP3-203ENST00000538686 CYSRT1A8MQ03 144 aa8.18□□□□□ -1.1
USP3-203ENST00000538686 K7EQZ3 153 aa8.18□□□□□ -1.1
USP3-203ENST00000538686 Q8NBF4 154 aa8.18□□□□□ -1.1
USP3-203ENST00000538686 SPRR4Q96PI1 79 aa8.18□□□□□ -1.1
USP3-203ENST00000538686 LINC01558Q9Y6Z2 57 aa8.18□□□□□ -1.1
USP3-203ENST00000538686 ASB16-AS1Q495Z4 193 aa8.17□□□□□ -1.1
USP3-203ENST00000538686 CASC2Q6XLA1 102 aa8.17□□□□□ -1.1
USP3-203ENST00000538686 DEFB124Q8NES8 71 aa8.17□□□□□ -1.1
USP3-203ENST00000538686 ASPMQ8IZT6 3477 aa8.17□□□□□ -1.1
USP3-203ENST00000538686 REG3AQ06141 175 aa8.17□□□□□ -1.1
USP3-203ENST00000538686 AKAP6Q13023 2319 aa8.16□□□□□ -1.1
USP3-203ENST00000538686 CMC4P56277 68 aaPredicted RBP8.16□□□□□ -1.1
USP3-203ENST00000538686 A0A1W2PNM2 257 aa8.15□□□□□ -1.1
USP3-203ENST00000538686 LINC01554Q52M75 96 aa8.15□□□□□ -1.1
USP3-203ENST00000538686 COA5Q86WW8 74 aa8.15□□□□□ -1.1
USP3-203ENST00000538686 EP300Q09472 2414 aaPredicted RBP8.15□□□□□ -1.1
USP3-203ENST00000538686 GYPEP15421 78 aa8.15□□□□□ -1.11
USP3-203ENST00000538686 PLAC8Q9NZF1 115 aa8.15□□□□□ -1.11
USP3-203ENST00000538686 ZDBF2Q9HCK1 2354 aa8.14□□□□□ -1.11
USP3-203ENST00000538686 C1orf137Q5JT78 98 aa8.14□□□□□ -1.11
USP3-203ENST00000538686 Q8N377 158 aa8.14□□□□□ -1.11
USP3-203ENST00000538686 A0A087X002 238 aa8.13□□□□□ -1.11
USP3-203ENST00000538686 H0Y9P7 68 aa8.13□□□□□ -1.11
USP3-203ENST00000538686 ANGP03950 147 aaKnown RBP8.13□□□□□ -1.11
USP3-203ENST00000538686 WNK1Q9H4A3 2382 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 DCHS2Q6V1P9 2916 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 C9orf163Q8N9P6 203 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 C4orf3Q8WVX3 66 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 IGLV10-54A0A075B6I4 117 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 LINC00313P59037 77 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 CSNK1G2-AS1Q8NCQ2 148 aa8.12□□□□□ -1.11
USP3-203ENST00000538686 AKAP13Q12802 2813 aa8.11□□□□□ -1.11
USP3-203ENST00000538686 IGKV2D-24A0A075B6R9 120 aa8.11□□□□□ -1.11
USP3-203ENST00000538686 DEFB136Q30KP8 78 aa8.11□□□□□ -1.11
USP3-203ENST00000538686 XAGE1AQ9HD64 81 aa8.11□□□□□ -1.11
USP3-203ENST00000538686 IGLV7-46A0A075B6I9 117 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 A0A1W2PPR1 153 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 TNP2Q05952 138 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 C6orf48Q9UBA6 75 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 BOD1L1Q8NFC6 3051 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 MSMBP08118 114 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 DHRS4-AS1Q9P1J3 65 aa8.1□□□□□ -1.11
USP3-203ENST00000538686 CNBPP62633 177 aaKnown RBP8.09□□□□□ -1.11
USP3-203ENST00000538686 CR1P17927 2039 aa8.09□□□□□ -1.11
USP3-203ENST00000538686 ZNF702PQ9H963 129 aa8.09□□□□□ -1.11
USP3-203ENST00000538686 PRPF8Q6P2Q9 2335 aaKnown RBP eCLIP8.08□□□□□ -1.121e-6■■■■□ 20.3
USP3-203ENST00000538686 PLA2G1BP04054 148 aaKnown RBP8.08□□□□□ -1.12
USP3-203ENST00000538686 GIG44P09565 113 aaPredicted RBP8.08□□□□□ -1.12
USP3-203ENST00000538686 PRR26Q8N8Z3 221 aa8.08□□□□□ -1.12
USP3-203ENST00000538686 DEFB105AQ8NG35 78 aa8.08□□□□□ -1.12
USP3-203ENST00000538686 PRO0255Q9UI72 69 aa8.08□□□□□ -1.12
USP3-203ENST00000538686 DEFB112Q30KQ8 113 aa8.07□□□□□ -1.12
USP3-203ENST00000538686 NCOR1O75376 2440 aa8.07□□□□□ -1.12
USP3-203ENST00000538686 LRBAP50851 2863 aa8.07□□□□□ -1.12
USP3-203ENST00000538686 EGFEM1PQ0D2K5 195 aa8.06□□□□□ -1.12
USP3-203ENST00000538686 C18orf65Q6ZTR6 163 aa8.06□□□□□ -1.12
USP3-203ENST00000538686 ABCA2Q9BZC7 2435 aa8.05□□□□□ -1.12
USP3-203ENST00000538686 C2CD3Q4AC94 2353 aa8.05□□□□□ -1.12
USP3-203ENST00000538686 KRTAP29-1A8MX34 341 aaPredicted RBP8.04□□□□□ -1.12
USP3-203ENST00000538686 WFDC13Q8IUB5 93 aa8.04□□□□□ -1.12
USP3-203ENST00000538686 MDFIQ99750 246 aa8.04□□□□□ -1.12
USP3-203ENST00000538686 B4DSR2 109 aa8.03□□□□□ -1.12
USP3-203ENST00000538686 CREBBPQ92793 2442 aa8.02□□□□□ -1.12
USP3-203ENST00000538686 DEFB130BP0DP73 79 aa8.02□□□□□ -1.12
USP3-203ENST00000538686 DEFB130AP0DP74 79 aa8.02□□□□□ -1.12
USP3-203ENST00000538686 SPINK7P58062 85 aa8.02□□□□□ -1.13
USP3-203ENST00000538686 SVEP1Q4LDE5 3571 aa8.02□□□□□ -1.13
USP3-203ENST00000538686 DMXL1Q9Y485 3027 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 FSHBP01225 129 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 SPAG11AQ6PDA7 123 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 WFDC10BQ8IUB3 73 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 SERTAD4-AS1Q5TG53 156 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 PRR34Q9NV39 138 aa8.01□□□□□ -1.13
USP3-203ENST00000538686 SPTAN1Q13813 2472 aaKnown RBP8.01□□□□□ -1.13
USP3-203ENST00000538686 BSNQ9UPA5 3926 aa8□□□□□ -1.13
USP3-203ENST00000538686 DNAJC9-AS1A6NH13 148 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 C7orf33Q8WU49 177 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 CAMK2N2Q96S95 79 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 RELNP78509 3460 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 HRNRQ86YZ3 2850 aaPredicted RBP7.99□□□□□ -1.13
USP3-203ENST00000538686 Q6ZRX8 168 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 PRAC1Q96KF2 57 aa7.99□□□□□ -1.13
USP3-203ENST00000538686 A0A096LPF7 62 aa7.98□□□□□ -1.13
USP3-203ENST00000538686 DEFB116Q30KQ4 102 aa7.97□□□□□ -1.13
USP3-203ENST00000538686 Q6YL49 198 aa7.96□□□□□ -1.14
USP3-203ENST00000538686 SPTA1P02549 2419 aa7.95□□□□□ -1.14
USP3-203ENST00000538686 ACACAQ13085 2346 aa7.95□□□□□ -1.14
USP3-203ENST00000538686 LELP1Q5T871 98 aa7.94□□□□□ -1.14
Retrieved 100 of 20,778 RNA–protein pairs in 80.1 ms