RNA–Protein interactions for RNA: ENST00000535915.5

LDLR-203, Transcript of low density lipoprotein receptor, humanhuman

TSL 2 BASIC

Gene LDLR, Length 2,768 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-203ENST00000535915 DPH3Q96FX2 82 aa8.94□□□□□ -0.98
LDLR-203ENST00000535915 CYSTM1Q9H1C7 97 aa8.94□□□□□ -0.98
LDLR-203ENST00000535915 ORMDL1Q9P0S3 153 aa8.93□□□□□ -0.98
LDLR-203ENST00000535915 UNQ6190/PRO20217Q6UXQ8 127 aa8.93□□□□□ -0.98
LDLR-203ENST00000535915 NCR3O14931 201 aa8.92□□□□□ -0.98
LDLR-203ENST00000535915 TMEM258P61165 79 aa8.92□□□□□ -0.98
LDLR-203ENST00000535915 C10orf25Q5T742 122 aa8.92□□□□□ -0.98
LDLR-203ENST00000535915 RPL18AQ02543 176 aaKnown RBP8.91□□□□□ -0.98
LDLR-203ENST00000535915 DSCR8Q96T75 97 aa8.91□□□□□ -0.98
LDLR-203ENST00000535915 PRR34Q9NV39 138 aa8.91□□□□□ -0.98
LDLR-203ENST00000535915 HIST1H4AP62805 103 aaKnown RBP8.91□□□□□ -0.98
LDLR-203ENST00000535915 LYPD5Q6UWN5 251 aa8.91□□□□□ -0.98
LDLR-203ENST00000535915 Q8NDZ9 215 aa8.91□□□□□ -0.98
LDLR-203ENST00000535915 OBSCN-AS1Q96MR7 158 aa8.91□□□□□ -0.98
LDLR-203ENST00000535915 CYSRT1A8MQ03 144 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 ENHOQ6UWT2 76 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 BAHCC1Q9P281 2608 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 C4orf26Q17RF5 130 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 S100A7L2Q5SY68 101 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 Q8N814 137 aa8.9□□□□□ -0.98
LDLR-203ENST00000535915 IGKV3D-7A0A0C4DH55 119 aa8.89□□□□□ -0.99
LDLR-203ENST00000535915 C6orf99Q4VX62 202 aa8.89□□□□□ -0.99
LDLR-203ENST00000535915 OXLD1Q5BKU9 147 aa8.89□□□□□ -0.99
LDLR-203ENST00000535915 HRCT1Q6UXD1 115 aa8.89□□□□□ -0.99
LDLR-203ENST00000535915 SERP2Q8N6R1 65 aa8.89□□□□□ -0.99
LDLR-203ENST00000535915 PKD1L1Q8TDX9 2849 aa8.88□□□□□ -0.99
LDLR-203ENST00000535915 RETNQ9HD89 108 aa8.88□□□□□ -0.99
LDLR-203ENST00000535915 A0A0J9YWU9 116 aa8.88□□□□□ -0.99
LDLR-203ENST00000535915 LINC00167Q96N53 147 aa8.88□□□□□ -0.99
LDLR-203ENST00000535915 MUC7Q8TAX7 377 aa8.87□□□□□ -0.99
LDLR-203ENST00000535915 ANK2Q01484 3957 aa8.87□□□□□ -0.99
LDLR-203ENST00000535915 OXTP01178 125 aa8.86□□□□□ -0.99
LDLR-203ENST00000535915 A0A087WVE0 104 aa8.85□□□□□ -0.99
LDLR-203ENST00000535915 KPRPQ5T749 579 aaPredicted RBP8.85□□□□□ -0.99
LDLR-203ENST00000535915 WFDC10BQ8IUB3 73 aa8.85□□□□□ -0.99
LDLR-203ENST00000535915 TMEM256-PLSCR3K7ERE1 68 aa8.85□□□□□ -0.99
LDLR-203ENST00000535915 KRTAP10-11P60412 298 aa8.85□□□□□ -0.99
LDLR-203ENST00000535915 LINC00846Q9NV44 126 aa8.84□□□□□ -0.99
LDLR-203ENST00000535915 FLNBO75369 2602 aaKnown RBP8.84□□□□□ -0.99
LDLR-203ENST00000535915 Q6ZTC4 211 aa8.84□□□□□ -1
LDLR-203ENST00000535915 C6orf48Q9UBA6 75 aa8.84□□□□□ -1
LDLR-203ENST00000535915 USP17L23D6RBM5 183 aa8.83□□□□□ -1
LDLR-203ENST00000535915 JMJD7-PLA2G4BH0Y9G9 81 aa8.83□□□□□ -1
LDLR-203ENST00000535915 UPK3BQ9BT76 320 aa8.83□□□□□ -1
LDLR-203ENST00000535915 GVQW2A0A096LPI5 108 aaPredicted RBP8.83□□□□□ -1
LDLR-203ENST00000535915 Q5XG85 94 aa8.83□□□□□ -1
LDLR-203ENST00000535915 H3BNG1 76 aa8.82□□□□□ -1
LDLR-203ENST00000535915 LINC00575Q6W349 94 aa8.82□□□□□ -1
LDLR-203ENST00000535915 XAGE1AQ9HD64 81 aa8.82□□□□□ -1
LDLR-203ENST00000535915 F8P00451 2351 aa8.82□□□□□ -1
LDLR-203ENST00000535915 CCKP06307 115 aa8.82□□□□□ -1
LDLR-203ENST00000535915 CMYA5Q8N3K9 4069 aa8.82□□□□□ -1
LDLR-203ENST00000535915 ZNF561-AS1K7EIQ3 104 aa8.81□□□□□ -1
LDLR-203ENST00000535915 IGLV6-57P01721 117 aa8.81□□□□□ -1
LDLR-203ENST00000535915 HIGD2BQ4VC39 106 aa8.81□□□□□ -1
LDLR-203ENST00000535915 Q6JHZ5 121 aa8.81□□□□□ -1
LDLR-203ENST00000535915 TENM3Q9P273 2699 aa8.8□□□□□ -1
LDLR-203ENST00000535915 MRAPQ8TCY5 172 aa8.79□□□□□ -1
LDLR-203ENST00000535915 CAMK2N2Q96S95 79 aa8.79□□□□□ -1
LDLR-203ENST00000535915 STAB1Q9NY15 2570 aa8.79□□□□□ -1
LDLR-203ENST00000535915 TRBV10-3A0A0K0K1G6 114 aa8.78□□□□□ -1
LDLR-203ENST00000535915 ESRGQ1W209 222 aa8.78□□□□□ -1
LDLR-203ENST00000535915 TRAV23DV6A0A075B6W5 121 aa8.77□□□□□ -1.01
LDLR-203ENST00000535915 EGFEM1PQ0D2K5 195 aa8.77□□□□□ -1.01
LDLR-203ENST00000535915 KRTAP26-1Q6PEX3 210 aa8.77□□□□□ -1.01
LDLR-203ENST00000535915 FBN1P35555 2871 aaKnown RBP8.76□□□□□ -1.01
LDLR-203ENST00000535915 KRTAP24-1Q3LI83 254 aa8.76□□□□□ -1.01
LDLR-203ENST00000535915 DIRC1Q969H9 104 aa8.76□□□□□ -1.01
LDLR-203ENST00000535915 Q6ZRU5 148 aa8.75□□□□□ -1.01
LDLR-203ENST00000535915 LAMTOR3Q9UHA4 124 aa8.75□□□□□ -1.01
LDLR-203ENST00000535915 C15orf56Q8N910 161 aa8.75□□□□□ -1.01
LDLR-203ENST00000535915 DEFB131BA0A096LNP1 70 aa8.74□□□□□ -1.01
LDLR-203ENST00000535915 Q6ZQY7 126 aa8.74□□□□□ -1.01
LDLR-203ENST00000535915 C1orf43Q9BWL3 253 aa8.74□□□□□ -1.01
LDLR-203ENST00000535915 GHRHP01286 108 aa8.74□□□□□ -1.01
LDLR-203ENST00000535915 RBM3P98179 157 aaKnown RBP8.74□□□□□ -1.01
LDLR-203ENST00000535915 C11orf45Q8TAV5 145 aa8.74□□□□□ -1.01
LDLR-203ENST00000535915 IGKV2D-24A0A075B6R9 120 aa8.73□□□□□ -1.01
LDLR-203ENST00000535915 ZNF73O43830 326 aaPredicted RBP8.73□□□□□ -1.01
LDLR-203ENST00000535915 VPREB1P12018 145 aa8.72□□□□□ -1.01
LDLR-203ENST00000535915 C20orf197Q8N268 126 aa8.72□□□□□ -1.01
LDLR-203ENST00000535915 MAST4O15021 2626 aa8.72□□□□□ -1.01
LDLR-203ENST00000535915 NDUFC2-KCTD14E9PQ53 114 aa8.72□□□□□ -1.01
LDLR-203ENST00000535915 LINC01556Q5JQF7 62 aa8.72□□□□□ -1.01
LDLR-203ENST00000535915 FAM236DA0A1B0GTK5 79 aa8.71□□□□□ -1.02
LDLR-203ENST00000535915 FAM236CP0DP71 79 aa8.71□□□□□ -1.02
LDLR-203ENST00000535915 COX7BP24311 80 aa8.71□□□□□ -1.02
LDLR-203ENST00000535915 Q6ZQT0 140 aa8.71□□□□□ -1.02
LDLR-203ENST00000535915 DNAH3Q8TD57 4116 aa8.7□□□□□ -1.02
LDLR-203ENST00000535915 PRO0628Q9UI54 55 aa8.7□□□□□ -1.02
LDLR-203ENST00000535915 UBL5Q9BZL1 73 aa8.7□□□□□ -1.02
LDLR-203ENST00000535915 M0R378 163 aa8.69□□□□□ -1.02
LDLR-203ENST00000535915 NOTCH1P46531 2555 aa8.69□□□□□ -1.02
LDLR-203ENST00000535915 LOC110117498A0A087WWA1 95 aa8.69□□□□□ -1.02
LDLR-203ENST00000535915 ELOF1P60002 83 aaKnown RBP8.69□□□□□ -1.02
LDLR-203ENST00000535915 H3BQ85 93 aa8.68□□□□□ -1.02
LDLR-203ENST00000535915 LINC00336Q6ZUF6 198 aa8.68□□□□□ -1.02
LDLR-203ENST00000535915 Q6ZRP5 223 aa8.68□□□□□ -1.02
LDLR-203ENST00000535915 ATP5EP2Q5VTU8 51 aa8.67□□□□□ -1.02
LDLR-203ENST00000535915 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP8.67□□□□□ -1.02
Retrieved 100 of 20,778 RNA–protein pairs in 101.1 ms