RNA–Protein interactions for RNA: ENST00000532339.1

CD44-235, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 589 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-235ENST00000532339 IGKV3OR2-268A0A0C4DH90 116 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 EDF1O60869 148 aaKnown RBP1.46□□□□□ -2.18
CD44-235ENST00000532339 ATP5HO75947 161 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 CST7O76096 145 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 MT1BP07438 61 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 DEFA1P59665 94 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 LINC00305Q7Z4B0 112 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 EXOC3-AS1Q8N2X6 119 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 ANKRD29Q8N6D5 301 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 OR5A1Q8NGJ0 315 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 LENEPQ9Y5L5 61 aa1.46□□□□□ -2.18
CD44-235ENST00000532339 TRBV6-1A0A0K0K1D8 114 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 PPBPP02775 128 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 SULT1A3P0DMM9 295 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 SULT1A4P0DMN0 295 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 IAH1Q2TAA2 248 aaPredicted RBP1.45□□□□□ -2.18
CD44-235ENST00000532339 FAM74A4Q5TZK3 123 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 PATE2Q6UY27 113 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 CYP2G1PQ6ZSU1 146 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 CROCCP2Q86T23 111 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 BORCS7Q96B45 105 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 FXYD6Q9H0Q3 95 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 ATG5Q9H1Y0 275 aa1.45□□□□□ -2.18
CD44-235ENST00000532339 TRBV19A0A075B6N1 114 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 FABP5P3A8MUU1 101 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 RNASE3P12724 160 aaKnown RBP1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BOP23527 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BBP33778 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BDP58876 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 TMEM258P61165 79 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H4AP62805 103 aaKnown RBP1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BCP62807 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 SLC38A11Q08AI6 406 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 PDE6HQ13956 83 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST2H2BEQ16778 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST2H2BFQ5QNW6 126 aaPredicted RBP1.44□□□□□ -2.18
CD44-235ENST00000532339 Q5VV11 94 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 KTN1-AS1Q86SY8 53 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BHQ93079 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BNQ99877 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 HIST1H2BMQ99879 126 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 RNASE7Q9H1E1 156 aaKnown RBP1.44□□□□□ -2.18
CD44-235ENST00000532339 MRPL35Q9NZE8 188 aaKnown RBP1.44□□□□□ -2.18
CD44-235ENST00000532339 C22orf24Q9Y442 160 aa1.44□□□□□ -2.18
CD44-235ENST00000532339 ATP11AUNQ6ZP68 121 aa1.43□□□□□ -2.18
CD44-235ENST00000532339 C12orf45Q8N5I9 185 aaPredicted RBP1.43□□□□□ -2.18
CD44-235ENST00000532339 CANT1Q8WVQ1 401 aa1.43□□□□□ -2.18
CD44-235ENST00000532339 TOMM6Q96B49 74 aa1.43□□□□□ -2.18
CD44-235ENST00000532339 PLEKHB2Q96CS7 222 aa1.43□□□□□ -2.18
CD44-235ENST00000532339 TP53RKQ96S44 253 aa1.43□□□□□ -2.18
CD44-235ENST00000532339 TRBV10-2A0A0K0K1G8 114 aa1.42□□□□□ -2.18
CD44-235ENST00000532339 IRGMA1A4Y4 181 aa1.42□□□□□ -2.18
CD44-235ENST00000532339 CCL25O15444 150 aa1.42□□□□□ -2.18
CD44-235ENST00000532339 AQP4P55087 323 aa1.42□□□□□ -2.18
CD44-235ENST00000532339 IZUMO2Q6UXV1 221 aa1.42□□□□□ -2.18
CD44-235ENST00000532339 TRAV9-1A0A075B6T8 112 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 C3orf85A0A1B0GTC6 90 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 HMSDA8MTL9 139 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 TCRAP04437 139 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 ZNF80P51504 273 aaPredicted RBP1.41□□□□□ -2.18
CD44-235ENST00000532339 FXYD2P54710 66 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 RAB4BP61018 213 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 C10orf113Q5VZT2 155 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 TERB2Q8NHR7 220 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 SIGMAR1Q99720 223 aa1.41□□□□□ -2.18
CD44-235ENST00000532339 SLC25A21Q9BQT8 299 aaPredicted RBP1.41□□□□□ -2.18
CD44-235ENST00000532339 LINC00959A0A1B0GUT2 108 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 IFITM5A6NNB3 132 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 F6UZH7 168 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 PDE6DO43924 150 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 S100A4P26447 101 aaKnown RBP1.4□□□□□ -2.19
CD44-235ENST00000532339 PRLHP81277 87 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 SPAG11BQ08648 103 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 SSBP3-AS1Q7Z2R9 100 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 DEFB107AQ8IZN7 70 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 BTF3L4Q96K17 158 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 SPRR4Q96PI1 79 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 IMUPQ9GZP8 106 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 TMEM14CQ9P0S9 112 aa1.4□□□□□ -2.19
CD44-235ENST00000532339 PAIP2BQ9ULR5 123 aaKnown RBP1.4□□□□□ -2.19
CD44-235ENST00000532339 EFCAB10A6NFE3 127 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 NDUFA1O15239 70 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 PMP2P02689 132 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 TRGC1P0CF51 173 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 RBM3P98179 157 aaKnown RBP1.39□□□□□ -2.19
CD44-235ENST00000532339 ZNF56Q15929 161 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 KRTAP19-8Q3LI54 63 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 MCFD2Q8NI22 146 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 ZNF625Q96I27 306 aaPredicted RBP1.39□□□□□ -2.19
CD44-235ENST00000532339 C6orf48Q9UBA6 75 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 CYSLTR1Q9Y271 337 aa1.39□□□□□ -2.19
CD44-235ENST00000532339 SCGB3A1Q96QR1 104 aa1.38□□□□□ -2.19
CD44-235ENST00000532339 LIMD2Q9BT23 127 aa1.38□□□□□ -2.19
CD44-235ENST00000532339 CCDC32Q9BV29 185 aa1.38□□□□□ -2.19
CD44-235ENST00000532339 SCN3BQ9NY72 215 aa1.38□□□□□ -2.19
CD44-235ENST00000532339 H3BVH4 76 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 PDCD5O14737 125 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 PYYP10082 97 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 FGF7P21781 194 aa1.37□□□□□ -2.19
CD44-235ENST00000532339 SMCO1Q147U7 214 aa1.37□□□□□ -2.19
Retrieved 100 of 20,778 RNA–protein pairs in 41 ms