RNA–Protein interactions for RNA: ENST00000531141.1

CD44-233, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 2

Gene CD44, Length 537 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-233ENST00000531141 CASC2Q6XLA1 102 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 ZNF833PQ6ZTB9 187 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 Q6ZUT4 128 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 ACBD7Q8N6N7 88 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 DPH3Q96FX2 82 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 SMIM7Q9BQ49 75 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 WFDC6Q9BQY6 131 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 DPH3P1Q9H4G8 78 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 SCN3BQ9NY72 215 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 COA4Q9NYJ1 87 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 FKBP11Q9NYL4 201 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 TAS2R8Q9NYW2 309 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 ZFP30Q9Y2G7 519 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 LSM2Q9Y333 95 aaKnown RBP0.96□□□□□ -2.26
CD44-233ENST00000531141 IER3IP1Q9Y5U9 82 aa0.96□□□□□ -2.26
CD44-233ENST00000531141 IGKV2-40A0A087WW87 121 aaPredicted RBP0.95□□□□□ -2.26
CD44-233ENST00000531141 SMIM31A0A1B0GVY4 71 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 C2orf70A6NJV1 201 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 A6NN06 94 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 J3QLW9 94 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 DEFB4AO15263 64 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 EDF1O60869 148 aaKnown RBP0.95□□□□□ -2.26
CD44-233ENST00000531141 IGKV2D-40P01614 121 aaPredicted RBP0.95□□□□□ -2.26
CD44-233ENST00000531141 TPPP2P59282 170 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 PKIAP61925 76 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 Q56UQ5 140 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 C1orf137Q5JT78 98 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 C12orf73Q69YU5 71 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 GTF2H5Q6ZYL4 71 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 VSTM2AQ8TAG5 236 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 WFDC10AQ9H1F0 79 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 RPRMQ9NS64 109 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 NOP16Q9Y3C1 178 aaKnown RBP0.95□□□□□ -2.26
CD44-233ENST00000531141 V9GYS6 101 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 MUC12Q9UKN1 5478 aa0.95□□□□□ -2.26
CD44-233ENST00000531141 TRAV14DV4A0A0A6YYC5 116 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 PIGBOS1A0A0B4J2F0 54 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 IGKV3D-7A0A0C4DH55 119 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 IGKV3OR2-268A0A0C4DH90 116 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 C3orf85A0A1B0GTC6 90 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 CCDC179H3BU77 68 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 APOC4-APOC2K7ER74 178 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 IGHV3-33P01772 117 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 APOC2P02655 101 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 CD2P06729 351 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 COX7CP15954 63 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 ADCYAP1P18509 176 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 CNBPP62633 177 aaKnown RBP0.94□□□□□ -2.26
CD44-233ENST00000531141 MINOS1Q5TGZ0 78 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 OR2T2Q6IF00 324 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 TEX261Q6UWH6 196 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 FOXI2Q6ZQN5 318 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 SNX29P2Q8IUI4 249 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 FAM19A2Q8N3H0 131 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 C5orf56Q8N8D9 126 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 MYOZ3Q8TDC0 251 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 DYNLRB2Q8TF09 96 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 PPDPFLQ8WWR9 84 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 AGPAT4-IT1Q9H0P7 198 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 Q9H521 79 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 AP4S1Q9Y587 144 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 SERP1Q9Y6X1 66 aa0.94□□□□□ -2.26
CD44-233ENST00000531141 TRAV30A0A087WSZ9 112 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 LOC100130705A0A1B0GUX0 176 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 TMEM218A2RU14 115 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 M0R143 59 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 PITX3O75364 302 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 NDUFB6O95139 128 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 PIPP12273 146 aaPredicted RBP0.93□□□□□ -2.26
CD44-233ENST00000531141 CAV3P56539 151 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 MIR22HGQ0VDD5 57 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 C10orf55Q5SWW7 151 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 COL5A1-AS1Q5SY13 56 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 Q6AWC8 147 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 UNQ6493/PRO21345Q6UXR8 122 aaPredicted RBP0.93□□□□□ -2.26
CD44-233ENST00000531141 LINC00299Q6ZSB3 139 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 SLC25A26Q70HW3 274 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 CLECL1Q8IZS7 167 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 LINC00052Q96N35 136 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 ORMDL1Q9P0S3 153 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 SCP2D1Q9UJQ7 156 aa0.93□□□□□ -2.26
CD44-233ENST00000531141 IGKV3-7A0A075B6H7 116 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 A0A087WTM6 91 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 LOC107984156A0A0G2JMH3 177 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 IQCF6A8MYZ5 107 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 MCRIP1C9JLW8 97 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 GEMIN2O14893 280 aaKnown RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 MRPS14O60783 128 aaKnown RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 KRTAP2-3P0C7H8 128 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 TRAPPC2P0DI81 140 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 TRAPPC2BP0DI82 140 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 CCL3L1P16619 93 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 POLR2JP52435 117 aaKnown RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 CCL18P55774 89 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 RPL37AP61513 92 aaKnown RBP0.92□□□□□ -2.26
CD44-233ENST00000531141 HSD52Q0P140 79 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 DEFB114Q30KQ6 69 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 FAM74A1Q5RGS3 127 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 SPANXN1Q5VSR9 72 aa0.92□□□□□ -2.26
CD44-233ENST00000531141 MIC13Q5XKP0 118 aa0.92□□□□□ -2.26
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms