RNA–Protein interactions for RNA: ENST00000527680.1

TRAPPC4-208, Transcript of trafficking protein particle complex 4, humanhuman

TSL 2

Gene TRAPPC4, Length 569 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRAPPC4-208ENST00000527680 URB1-AS1Q96HZ7 61 aa13□□□□□ -0.33
TRAPPC4-208ENST00000527680 M0R378 163 aa12.99□□□□□ -0.33
TRAPPC4-208ENST00000527680 SFTA2Q6UW10 78 aa12.99□□□□□ -0.33
TRAPPC4-208ENST00000527680 PLEKHB2Q96CS7 222 aa12.98□□□□□ -0.33
TRAPPC4-208ENST00000527680 HIGD2AQ9BW72 106 aa12.98□□□□□ -0.33
TRAPPC4-208ENST00000527680 C10orf91Q5T1B1 145 aa12.97□□□□□ -0.33
TRAPPC4-208ENST00000527680 CDIP1Q9H305 208 aa12.97□□□□□ -0.33
TRAPPC4-208ENST00000527680 A0A0U1RRA0 63 aa12.96□□□□□ -0.33
TRAPPC4-208ENST00000527680 Q8NDZ9 215 aa12.96□□□□□ -0.33
TRAPPC4-208ENST00000527680 IGLV7-46A0A075B6I9 117 aa12.95□□□□□ -0.34
TRAPPC4-208ENST00000527680 ATP6V1G1O75348 118 aa12.95□□□□□ -0.34
TRAPPC4-208ENST00000527680 CHTOPQ9Y3Y2 248 aaKnown RBP12.95□□□□□ -0.34
TRAPPC4-208ENST00000527680 C3orf22Q8N5N4 141 aa12.93□□□□□ -0.34
TRAPPC4-208ENST00000527680 CTAG1AP78358 180 aa12.91□□□□□ -0.34
TRAPPC4-208ENST00000527680 TPRXLQ17RH7 258 aa12.89□□□□□ -0.35
TRAPPC4-208ENST00000527680 C4orf48Q5BLP8 95 aa12.89□□□□□ -0.35
TRAPPC4-208ENST00000527680 TMEM223A0PJW6 202 aa12.87□□□□□ -0.35
TRAPPC4-208ENST00000527680 APOC3P02656 99 aa12.87□□□□□ -0.35
TRAPPC4-208ENST00000527680 SMIM13P0DJ93 91 aa12.87□□□□□ -0.35
TRAPPC4-208ENST00000527680 MEIG1Q5JSS6 88 aa12.87□□□□□ -0.35
TRAPPC4-208ENST00000527680 SPAG11AQ6PDA7 123 aa12.87□□□□□ -0.35
TRAPPC4-208ENST00000527680 BOD1L2Q8IYS8 172 aa12.86□□□□□ -0.35
TRAPPC4-208ENST00000527680 IFI27L1Q96BM0 104 aa12.86□□□□□ -0.35
TRAPPC4-208ENST00000527680 SPRR4Q96PI1 79 aa12.86□□□□□ -0.35
TRAPPC4-208ENST00000527680 PPDPFQ9H3Y8 114 aa12.86□□□□□ -0.35
TRAPPC4-208ENST00000527680 ZNF706Q9Y5V0 76 aaPredicted RBP12.86□□□□□ -0.35
TRAPPC4-208ENST00000527680 TRAV12-1A0A0B4J245 112 aa12.83□□□□□ -0.36
TRAPPC4-208ENST00000527680 NCR3O14931 201 aa12.83□□□□□ -0.36
TRAPPC4-208ENST00000527680 PRYO14603 147 aa12.82□□□□□ -0.36
TRAPPC4-208ENST00000527680 SNAPINO95295 136 aa12.82□□□□□ -0.36
TRAPPC4-208ENST00000527680 NDUFA5Q16718 116 aa12.82□□□□□ -0.36
TRAPPC4-208ENST00000527680 MIR7-3HGQ8N6C7 128 aa12.82□□□□□ -0.36
TRAPPC4-208ENST00000527680 CHCHD1Q96BP2 118 aaKnown RBP12.82□□□□□ -0.36
TRAPPC4-208ENST00000527680 SMCR5Q8TEV8 140 aa12.81□□□□□ -0.36
TRAPPC4-208ENST00000527680 ETDCA0A1B0GVM5 59 aa12.8□□□□□ -0.36
TRAPPC4-208ENST00000527680 LINC00587B1AMM8 73 aa12.8□□□□□ -0.36
TRAPPC4-208ENST00000527680 HERV-K104P63124 156 aa12.8□□□□□ -0.36
TRAPPC4-208ENST00000527680 SVBPQ8N300 66 aa12.8□□□□□ -0.36
TRAPPC4-208ENST00000527680 DAND5Q8N907 189 aa12.79□□□□□ -0.36
TRAPPC4-208ENST00000527680 S100A12P80511 92 aa12.78□□□□□ -0.36
TRAPPC4-208ENST00000527680 LINC00337Q8N6G1 96 aa12.78□□□□□ -0.36
TRAPPC4-208ENST00000527680 KCNQ1DNQ9H478 68 aa12.78□□□□□ -0.36
TRAPPC4-208ENST00000527680 Q8NBF4 154 aa12.77□□□□□ -0.37
TRAPPC4-208ENST00000527680 MAP1LC3CQ9BXW4 147 aa12.77□□□□□ -0.37
TRAPPC4-208ENST00000527680 NDUFA12Q9UI09 145 aa12.77□□□□□ -0.37
TRAPPC4-208ENST00000527680 MYMXA0A1B0GTQ4 84 aa12.76□□□□□ -0.37
TRAPPC4-208ENST00000527680 H0Y8G0 127 aa12.76□□□□□ -0.37
TRAPPC4-208ENST00000527680 HSBP1O75506 76 aa12.75□□□□□ -0.37
TRAPPC4-208ENST00000527680 FP248Q71RG6 208 aaPredicted RBP12.75□□□□□ -0.37
TRAPPC4-208ENST00000527680 FAM19A2Q8N3H0 131 aa12.75□□□□□ -0.37
TRAPPC4-208ENST00000527680 KRTAP9-2Q9BYQ4 174 aa12.75□□□□□ -0.37
TRAPPC4-208ENST00000527680 TRBV10-3A0A0K0K1G6 114 aa12.74□□□□□ -0.37
TRAPPC4-208ENST00000527680 SPRR1AP35321 89 aa12.74□□□□□ -0.37
TRAPPC4-208ENST00000527680 LCE2AQ5TA79 106 aaPredicted RBP12.74□□□□□ -0.37
TRAPPC4-208ENST00000527680 GAGE2AQ6NT46 116 aa12.72□□□□□ -0.37
TRAPPC4-208ENST00000527680 FAT4Q6V0I7 4981 aa12.7□□□□□ -0.38
TRAPPC4-208ENST00000527680 KRTAP4-16G5E9R7 235 aaPredicted RBP12.7□□□□□ -0.38
TRAPPC4-208ENST00000527680 SPINK1P00995 79 aa12.7□□□□□ -0.38
TRAPPC4-208ENST00000527680 MUC17Q685J3 4493 aa12.69□□□□□ -0.38
TRAPPC4-208ENST00000527680 YPEL4Q96NS1 127 aa12.68□□□□□ -0.38
TRAPPC4-208ENST00000527680 IGLV9-49A0A0B4J1Y8 123 aa12.67□□□□□ -0.38
TRAPPC4-208ENST00000527680 DDTP30046 118 aa12.67□□□□□ -0.38
TRAPPC4-208ENST00000527680 B5MCH6 92 aa12.66□□□□□ -0.38
TRAPPC4-208ENST00000527680 LEPROTO15243 131 aa12.66□□□□□ -0.38
TRAPPC4-208ENST00000527680 LEPROTL1O95214 131 aa12.65□□□□□ -0.38
TRAPPC4-208ENST00000527680 LINC00483Q53H64 154 aa12.65□□□□□ -0.38
TRAPPC4-208ENST00000527680 MIEN1Q9BRT3 115 aa12.65□□□□□ -0.38
TRAPPC4-208ENST00000527680 ERC2-IT1O76042 136 aa12.64□□□□□ -0.39
TRAPPC4-208ENST00000527680 TSPEAR-AS2P59090 65 aa12.64□□□□□ -0.39
TRAPPC4-208ENST00000527680 MOBPQ13875 183 aa12.64□□□□□ -0.39
TRAPPC4-208ENST00000527680 KRTAP13-3Q3SY46 172 aa12.63□□□□□ -0.39
TRAPPC4-208ENST00000527680 TRBV10-2A0A0K0K1G8 114 aa12.62□□□□□ -0.39
TRAPPC4-208ENST00000527680 PLNP26678 52 aa12.62□□□□□ -0.39
TRAPPC4-208ENST00000527680 S100A7L2Q5SY68 101 aa12.62□□□□□ -0.39
TRAPPC4-208ENST00000527680 SSBP3-AS1Q7Z2R9 100 aa12.62□□□□□ -0.39
TRAPPC4-208ENST00000527680 LOC107984156A0A0G2JMH3 177 aa12.61□□□□□ -0.39
TRAPPC4-208ENST00000527680 J3QQQ9 107 aa12.61□□□□□ -0.39
TRAPPC4-208ENST00000527680 TRGC2P03986 189 aa12.61□□□□□ -0.39
TRAPPC4-208ENST00000527680 HERVK_113P61574 105 aa12.61□□□□□ -0.39
TRAPPC4-208ENST00000527680 ARL17AQ8IVW1 177 aa12.61□□□□□ -0.39
TRAPPC4-208ENST00000527680 LGALS3P17931 250 aaKnown RBP12.6□□□□□ -0.39
TRAPPC4-208ENST00000527680 SERF1AO75920 110 aa12.59□□□□□ -0.39
TRAPPC4-208ENST00000527680 FABP4P15090 132 aa12.59□□□□□ -0.39
TRAPPC4-208ENST00000527680 Q9BRP9 147 aa12.59□□□□□ -0.39
TRAPPC4-208ENST00000527680 SPANXB1Q9NS25 103 aaPredicted RBP12.59□□□□□ -0.39
TRAPPC4-208ENST00000527680 DPM2O94777 84 aa12.58□□□□□ -0.4
TRAPPC4-208ENST00000527680 Q6ZRX8 168 aa12.58□□□□□ -0.4
TRAPPC4-208ENST00000527680 PMCHL2Q9BQD1 86 aa12.58□□□□□ -0.4
TRAPPC4-208ENST00000527680 HSPB8Q9UJY1 196 aa12.58□□□□□ -0.4
TRAPPC4-208ENST00000527680 NMUP48645 174 aa12.57□□□□□ -0.4
TRAPPC4-208ENST00000527680 ASB16-AS1Q495Z4 193 aa12.57□□□□□ -0.4
TRAPPC4-208ENST00000527680 SEC61BP60468 96 aaKnown RBP12.56□□□□□ -0.4
TRAPPC4-208ENST00000527680 JOSD1Q15040 202 aaPredicted RBP12.56□□□□□ -0.4
TRAPPC4-208ENST00000527680 IGKCP01834 107 aa12.55□□□□□ -0.4
TRAPPC4-208ENST00000527680 SLC25A20O43772 301 aa12.54□□□□□ -0.4
TRAPPC4-208ENST00000527680 NDUFC2O95298 119 aa12.54□□□□□ -0.4
TRAPPC4-208ENST00000527680 NPC2P61916 151 aa12.54□□□□□ -0.4
TRAPPC4-208ENST00000527680 RPS29P62273 56 aaKnown RBP12.54□□□□□ -0.4
TRAPPC4-208ENST00000527680 C9orf153Q5TBE3 101 aa12.54□□□□□ -0.4
TRAPPC4-208ENST00000527680 Q8N377 158 aa12.54□□□□□ -0.4
Retrieved 100 of 20,778 RNA–protein pairs in 136.7 ms