RNA–Protein interactions for RNA: ENST00000526977.5

VPS28-207, Transcript of VPS28, ESCRT-I subunit, humanhuman

TSL 5

Gene VPS28, Length 2,036 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS28-207ENST00000526977 CBY1Q9Y3M2 126 aa12.52□□□□□ -0.41
VPS28-207ENST00000526977 SLC25A20O43772 301 aa12.51□□□□□ -0.41
VPS28-207ENST00000526977 NTN5Q8WTR8 489 aaPredicted RBP12.5□□□□□ -0.41
VPS28-207ENST00000526977 M0QXV9 152 aa12.49□□□□□ -0.41
VPS28-207ENST00000526977 TEN1Q86WV5 123 aa12.49□□□□□ -0.41
VPS28-207ENST00000526977 LST1O00453 97 aa12.49□□□□□ -0.41
VPS28-207ENST00000526977 LY6G6CO95867 125 aa12.48□□□□□ -0.41
VPS28-207ENST00000526977 RPL28P46779 137 aaKnown RBP12.47□□□□□ -0.41
VPS28-207ENST00000526977 LINC00476Q8WZB0 136 aa12.47□□□□□ -0.41
VPS28-207ENST00000526977 GVQW2A0A096LPI5 108 aaPredicted RBP12.47□□□□□ -0.41
VPS28-207ENST00000526977 LINC01600Q96MT4 127 aa12.47□□□□□ -0.41
VPS28-207ENST00000526977 DNAH1Q9P2D7 4330 aa12.47□□□□□ -0.41
VPS28-207ENST00000526977 J3QR89 54 aa12.46□□□□□ -0.41
VPS28-207ENST00000526977 ANKRD29Q8N6D5 301 aa12.46□□□□□ -0.41
VPS28-207ENST00000526977 CARD19Q96LW7 228 aa12.46□□□□□ -0.41
VPS28-207ENST00000526977 TRBV10-2A0A0K0K1G8 114 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 PRR3P79522 188 aaKnown RBP12.45□□□□□ -0.42
VPS28-207ENST00000526977 HIGD2BQ4VC39 106 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 C15orf56Q8N910 161 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 VPS13DQ5THJ4 4388 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 ZNF561-AS1K7EIQ3 104 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 SMIM11BQ8TCY0 68 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 C6orf48Q9UBA6 75 aa12.45□□□□□ -0.42
VPS28-207ENST00000526977 NDUFC2O95298 119 aa12.44□□□□□ -0.42
VPS28-207ENST00000526977 OR13C6PQ8NH95 151 aa12.44□□□□□ -0.42
VPS28-207ENST00000526977 PPDPFLQ8WWR9 84 aa12.44□□□□□ -0.42
VPS28-207ENST00000526977 M0R2N4 97 aa12.42□□□□□ -0.42
VPS28-207ENST00000526977 PSCAO43653 123 aa12.42□□□□□ -0.42
VPS28-207ENST00000526977 Q6ZR54 194 aa12.42□□□□□ -0.42
VPS28-207ENST00000526977 Q8NDZ9 215 aa12.42□□□□□ -0.42
VPS28-207ENST00000526977 CAMK2N2Q96S95 79 aa12.41□□□□□ -0.42
VPS28-207ENST00000526977 C2orf48Q96LS8 159 aa12.4□□□□□ -0.42
VPS28-207ENST00000526977 FAM218AQ96MZ4 157 aa12.39□□□□□ -0.43
VPS28-207ENST00000526977 H3BT86 120 aa12.38□□□□□ -0.43
VPS28-207ENST00000526977 Q6ZRU5 148 aa12.38□□□□□ -0.43
VPS28-207ENST00000526977 USP17L23D6RBM5 183 aa12.37□□□□□ -0.43
VPS28-207ENST00000526977 F8WDY8 70 aa12.37□□□□□ -0.43
VPS28-207ENST00000526977 TRACP01848 142 aa12.36□□□□□ -0.43
VPS28-207ENST00000526977 Q6ZRN7 208 aaPredicted RBP12.35□□□□□ -0.43
VPS28-207ENST00000526977 TMEM126AQ9H061 195 aa12.35□□□□□ -0.43
VPS28-207ENST00000526977 H0YGX0 51 aa12.34□□□□□ -0.43
VPS28-207ENST00000526977 NCR3O14931 201 aa12.34□□□□□ -0.43
VPS28-207ENST00000526977 TEX49A0A1B0GTD5 131 aa12.33□□□□□ -0.43
VPS28-207ENST00000526977 XAGE1AQ9HD64 81 aa12.33□□□□□ -0.43
VPS28-207ENST00000526977 C1orf134Q5TEV5 83 aa12.32□□□□□ -0.44
VPS28-207ENST00000526977 C14orf177Q52M58 125 aa12.32□□□□□ -0.44
VPS28-207ENST00000526977 KMT2AQ03164 3969 aa12.31□□□□□ -0.44
VPS28-207ENST00000526977 LECT2O14960 151 aa12.31□□□□□ -0.44
VPS28-207ENST00000526977 SYCNQ0VAF6 134 aa12.31□□□□□ -0.44
VPS28-207ENST00000526977 A0A087WYN8 130 aa12.3□□□□□ -0.44
VPS28-207ENST00000526977 NDUFC2-KCTD14E9PQ53 114 aa12.3□□□□□ -0.44
VPS28-207ENST00000526977 ALMS1Q8TCU4 4167 aa12.29□□□□□ -0.44
VPS28-207ENST00000526977 S100A7L2Q5SY68 101 aa12.29□□□□□ -0.44
VPS28-207ENST00000526977 CDIP1Q9H305 208 aa12.29□□□□□ -0.44
VPS28-207ENST00000526977 LRCOL1A6NCL2 159 aa12.28□□□□□ -0.44
VPS28-207ENST00000526977 BAALC-AS2P0C853 105 aa12.28□□□□□ -0.44
VPS28-207ENST00000526977 RPL18AQ02543 176 aaKnown RBP12.28□□□□□ -0.44
VPS28-207ENST00000526977 SLPIP03973 132 aa12.27□□□□□ -0.44
VPS28-207ENST00000526977 IGLV6-57P01721 117 aa12.27□□□□□ -0.45
VPS28-207ENST00000526977 Q6ZRP5 223 aa12.27□□□□□ -0.45
VPS28-207ENST00000526977 PCP4P48539 62 aa12.26□□□□□ -0.45
VPS28-207ENST00000526977 LCE6AA0A183 80 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 GAGE2EQ4V326 116 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 SIGMAR1Q99720 223 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 GAGE2DQ9UEU5 116 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 C22orf24Q9Y442 160 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 DNAH10Q8IVF4 4471 aa12.25□□□□□ -0.45
VPS28-207ENST00000526977 VPREB1P12018 145 aa12.24□□□□□ -0.45
VPS28-207ENST00000526977 C6orf99Q4VX62 202 aa12.23□□□□□ -0.45
VPS28-207ENST00000526977 DNAH6Q9C0G6 4158 aa12.23□□□□□ -0.45
VPS28-207ENST00000526977 CNBPP62633 177 aaKnown RBP12.23□□□□□ -0.45
VPS28-207ENST00000526977 DNAL4O96015 105 aa12.22□□□□□ -0.45
VPS28-207ENST00000526977 A0A087WTM6 91 aa12.21□□□□□ -0.45
VPS28-207ENST00000526977 TRBV10-3A0A0K0K1G6 114 aa12.21□□□□□ -0.46
VPS28-207ENST00000526977 C9orf129Q5T035 196 aaKnown RBP12.2□□□□□ -0.46
VPS28-207ENST00000526977 TLX1NBP0CAT3 122 aa12.2□□□□□ -0.46
VPS28-207ENST00000526977 Q8N814 137 aa12.2□□□□□ -0.46
VPS28-207ENST00000526977 A0A1B0GX51 115 aa12.18□□□□□ -0.46
VPS28-207ENST00000526977 M0R378 163 aa12.18□□□□□ -0.46
VPS28-207ENST00000526977 IGLV2-33A0A075B6J2 118 aaPredicted RBP12.18□□□□□ -0.46
VPS28-207ENST00000526977 LINC00167Q96N53 147 aa12.17□□□□□ -0.46
VPS28-207ENST00000526977 DNAH2Q9P225 4427 aa12.17□□□□□ -0.46
VPS28-207ENST00000526977 TRAV23DV6A0A075B6W5 121 aa12.16□□□□□ -0.46
VPS28-207ENST00000526977 XGP55808 180 aa12.16□□□□□ -0.46
VPS28-207ENST00000526977 LINC00575Q6W349 94 aa12.16□□□□□ -0.46
VPS28-207ENST00000526977 RTL8CO15255 209 aa12.15□□□□□ -0.46
VPS28-207ENST00000526977 MT-ATP8P03928 68 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 ORMDL1Q9P0S3 153 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 HYDINQ4G0P3 5121 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 LOC107984640A0A0U1RRK4 108 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 C21orf62-AS1Q17RA5 79 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 C9orf163Q8N9P6 203 aa12.13□□□□□ -0.47
VPS28-207ENST00000526977 TNP2Q05952 138 aa12.12□□□□□ -0.47
VPS28-207ENST00000526977 SERTAD4-AS1Q5TG53 156 aa12.12□□□□□ -0.47
VPS28-207ENST00000526977 FAM240AA0A1B0GVK7 77 aa12.11□□□□□ -0.47
VPS28-207ENST00000526977 ZNF73O43830 326 aaPredicted RBP12.11□□□□□ -0.47
VPS28-207ENST00000526977 DIRC1Q969H9 104 aa12.11□□□□□ -0.47
VPS28-207ENST00000526977 PKIGQ9Y2B9 76 aa12.11□□□□□ -0.47
VPS28-207ENST00000526977 PLA2G2DQ9UNK4 145 aa12.11□□□□□ -0.47
VPS28-207ENST00000526977 SACSQ9NZJ4 4579 aa12.1□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 70.1 ms