RNA–Protein interactions for RNA: ENST00000515562.1

DDX41-217, Transcript of DEAD-box helicase 41, humanhuman

TSL 1 (best)

Gene DDX41, Length 1,184 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX41-217ENST00000515562 YPEL4Q96NS1 127 aa10.29□□□□□ -0.76
DDX41-217ENST00000515562 PRLHP81277 87 aa10.28□□□□□ -0.76
DDX41-217ENST00000515562 TMEM223A0PJW6 202 aa10.27□□□□□ -0.77
DDX41-217ENST00000515562 TMEM238C9JI98 176 aa10.27□□□□□ -0.77
DDX41-217ENST00000515562 LINC00158P58513 81 aa10.27□□□□□ -0.77
DDX41-217ENST00000515562 ANAPC11Q9NYG5 84 aa10.27□□□□□ -0.77
DDX41-217ENST00000515562 M0R378 163 aa10.26□□□□□ -0.77
DDX41-217ENST00000515562 KRTAP13-2Q52LG2 175 aa10.26□□□□□ -0.77
DDX41-217ENST00000515562 Q8NDZ9 215 aa10.26□□□□□ -0.77
DDX41-217ENST00000515562 IGKV2D-26A0A0A0MRZ7 120 aa10.23□□□□□ -0.77
DDX41-217ENST00000515562 HSBP1O75506 76 aa10.23□□□□□ -0.77
DDX41-217ENST00000515562 ATP6V1G1O75348 118 aa10.22□□□□□ -0.77
DDX41-217ENST00000515562 LINC00304Q8N9R0 145 aa10.22□□□□□ -0.77
DDX41-217ENST00000515562 A0A0U1RRA0 63 aa10.21□□□□□ -0.77
DDX41-217ENST00000515562 HERV-K104P63124 156 aa10.21□□□□□ -0.77
DDX41-217ENST00000515562 MEIG1Q5JSS6 88 aa10.21□□□□□ -0.77
DDX41-217ENST00000515562 CBLN2Q8IUK8 224 aa10.21□□□□□ -0.77
DDX41-217ENST00000515562 LINC00587B1AMM8 73 aa10.2□□□□□ -0.78
DDX41-217ENST00000515562 SMIM13P0DJ93 91 aa10.19□□□□□ -0.78
DDX41-217ENST00000515562 FAM19A2Q8N3H0 131 aa10.19□□□□□ -0.78
DDX41-217ENST00000515562 PLEKHB2Q96CS7 222 aa10.19□□□□□ -0.78
DDX41-217ENST00000515562 HIGD2AQ9BW72 106 aa10.19□□□□□ -0.78
DDX41-217ENST00000515562 CTAG1AP78358 180 aa10.18□□□□□ -0.78
DDX41-217ENST00000515562 BOD1L2Q8IYS8 172 aa10.18□□□□□ -0.78
DDX41-217ENST00000515562 PRYO14603 147 aa10.17□□□□□ -0.78
DDX41-217ENST00000515562 MIR7-3HGQ8N6C7 128 aa10.17□□□□□ -0.78
DDX41-217ENST00000515562 MAP1LC3CQ9BXW4 147 aa10.17□□□□□ -0.78
DDX41-217ENST00000515562 NDUFA12Q9UI09 145 aa10.17□□□□□ -0.78
DDX41-217ENST00000515562 MYMXA0A1B0GTQ4 84 aa10.16□□□□□ -0.78
DDX41-217ENST00000515562 H0Y8G0 127 aa10.16□□□□□ -0.78
DDX41-217ENST00000515562 LEPROTL1O95214 131 aa10.15□□□□□ -0.78
DDX41-217ENST00000515562 TRGC2P03986 189 aa10.15□□□□□ -0.78
DDX41-217ENST00000515562 ZNF706Q9Y5V0 76 aaPredicted RBP10.15□□□□□ -0.78
DDX41-217ENST00000515562 NCR3O14931 201 aa10.14□□□□□ -0.79
DDX41-217ENST00000515562 PLNP26678 52 aa10.14□□□□□ -0.79
DDX41-217ENST00000515562 SERF1AO75920 110 aa10.13□□□□□ -0.79
DDX41-217ENST00000515562 LINC00337Q8N6G1 96 aa10.13□□□□□ -0.79
DDX41-217ENST00000515562 SPRR4Q96PI1 79 aa10.13□□□□□ -0.79
DDX41-217ENST00000515562 KCNQ1DNQ9H478 68 aa10.13□□□□□ -0.79
DDX41-217ENST00000515562 MUC2Q02817 5179 aa10.12□□□□□ -0.79
DDX41-217ENST00000515562 SPRR1AP35321 89 aa10.12□□□□□ -0.79
DDX41-217ENST00000515562 S100A12P80511 92 aa10.12□□□□□ -0.79
DDX41-217ENST00000515562 RETNLBQ9BQ08 111 aa10.12□□□□□ -0.79
DDX41-217ENST00000515562 HSPB8Q9UJY1 196 aa10.12□□□□□ -0.79
DDX41-217ENST00000515562 LINC00310P59036 64 aa10.11□□□□□ -0.79
DDX41-217ENST00000515562 C3orf22Q8N5N4 141 aa10.11□□□□□ -0.79
DDX41-217ENST00000515562 ETDCA0A1B0GVM5 59 aa10.1□□□□□ -0.79
DDX41-217ENST00000515562 LEPROTO15243 131 aa10.1□□□□□ -0.79
DDX41-217ENST00000515562 TSPEAR-AS2P59090 65 aa10.1□□□□□ -0.79
DDX41-217ENST00000515562 A0A0U1RQV1 116 aa10.09□□□□□ -0.79
DDX41-217ENST00000515562 HERVK_113P61574 105 aa10.09□□□□□ -0.79
DDX41-217ENST00000515562 SPAG11AQ6PDA7 123 aa10.09□□□□□ -0.79
DDX41-217ENST00000515562 TRBV10-3A0A0K0K1G6 114 aa10.08□□□□□ -0.8
DDX41-217ENST00000515562 KRTAP4-16G5E9R7 235 aaPredicted RBP10.08□□□□□ -0.8
DDX41-217ENST00000515562 J3QQQ9 107 aa10.08□□□□□ -0.8
DDX41-217ENST00000515562 DPM2O94777 84 aa10.08□□□□□ -0.8
DDX41-217ENST00000515562 NMUP48645 174 aa10.08□□□□□ -0.8
DDX41-217ENST00000515562 LOC107984156A0A0G2JMH3 177 aa10.07□□□□□ -0.8
DDX41-217ENST00000515562 TPRXLQ17RH7 258 aa10.07□□□□□ -0.8
DDX41-217ENST00000515562 ARL17AQ8IVW1 177 aa10.07□□□□□ -0.8
DDX41-217ENST00000515562 TRBV10-2A0A0K0K1G8 114 aa10.06□□□□□ -0.8
DDX41-217ENST00000515562 FABP4P15090 132 aa10.06□□□□□ -0.8
DDX41-217ENST00000515562 DAND5Q8N907 189 aa10.06□□□□□ -0.8
DDX41-217ENST00000515562 MIEN1Q9BRT3 115 aa10.06□□□□□ -0.8
DDX41-217ENST00000515562 IGLV7-46A0A075B6I9 117 aa10.05□□□□□ -0.8
DDX41-217ENST00000515562 IGKCP01834 107 aa10.05□□□□□ -0.8
DDX41-217ENST00000515562 LGALS3P17931 250 aaKnown RBP10.05□□□□□ -0.8
DDX41-217ENST00000515562 SMCR5Q8TEV8 140 aa10.05□□□□□ -0.8
DDX41-217ENST00000515562 C4orf48Q5BLP8 95 aa10.04□□□□□ -0.8
DDX41-217ENST00000515562 PMCHL2Q9BQD1 86 aa10.04□□□□□ -0.8
DDX41-217ENST00000515562 CDIP1Q9H305 208 aa10.04□□□□□ -0.8
DDX41-217ENST00000515562 SPANXB1Q9NS25 103 aaPredicted RBP10.04□□□□□ -0.8
DDX41-217ENST00000515562 DDTP30046 118 aa10.03□□□□□ -0.8
DDX41-217ENST00000515562 LINC00483Q53H64 154 aa10.02□□□□□ -0.81
DDX41-217ENST00000515562 COLCA2A8K830 154 aa10.01□□□□□ -0.81
DDX41-217ENST00000515562 B5MCH6 92 aa10.01□□□□□ -0.81
DDX41-217ENST00000515562 NDUFC2O95298 119 aa10.01□□□□□ -0.81
DDX41-217ENST00000515562 Q8NBF4 154 aa10.01□□□□□ -0.81
DDX41-217ENST00000515562 PPDPFQ9H3Y8 114 aa10.01□□□□□ -0.81
DDX41-217ENST00000515562 FP248Q71RG6 208 aaPredicted RBP10□□□□□ -0.81
DDX41-217ENST00000515562 S100A7L2Q5SY68 101 aa9.99□□□□□ -0.81
DDX41-217ENST00000515562 Q6ZRX8 168 aa9.99□□□□□ -0.81
DDX41-217ENST00000515562 SLC7A5P1Q8MH63 180 aa9.99□□□□□ -0.81
DDX41-217ENST00000515562 IGLV6-57P01721 117 aa9.98□□□□□ -0.81
DDX41-217ENST00000515562 GAGE2AQ6NT46 116 aa9.98□□□□□ -0.81
DDX41-217ENST00000515562 E9PLD3 99 aa9.97□□□□□ -0.81
DDX41-217ENST00000515562 SPINK1P00995 79 aa9.97□□□□□ -0.81
DDX41-217ENST00000515562 TRAV23DV6A0A075B6W5 121 aa9.96□□□□□ -0.82
DDX41-217ENST00000515562 A0A0J9YXY3 114 aa9.96□□□□□ -0.82
DDX41-217ENST00000515562 Q9BRP9 147 aa9.96□□□□□ -0.82
DDX41-217ENST00000515562 ERC2-IT1O76042 136 aa9.95□□□□□ -0.82
DDX41-217ENST00000515562 JOSD1Q15040 202 aaPredicted RBP9.95□□□□□ -0.82
DDX41-217ENST00000515562 MOBPQ13875 183 aa9.94□□□□□ -0.82
DDX41-217ENST00000515562 CBY1Q9Y3M2 126 aa9.94□□□□□ -0.82
DDX41-217ENST00000515562 IGLV9-49A0A0B4J1Y8 123 aa9.93□□□□□ -0.82
DDX41-217ENST00000515562 SYS1-DBNDD2H3BUS1 97 aa9.93□□□□□ -0.82
DDX41-217ENST00000515562 SOSTDC1Q6X4U4 206 aa9.93□□□□□ -0.82
DDX41-217ENST00000515562 ZNF73O43830 326 aaPredicted RBP9.92□□□□□ -0.82
DDX41-217ENST00000515562 NPC2P61916 151 aa9.92□□□□□ -0.82
DDX41-217ENST00000515562 RPS29P62273 56 aaKnown RBP9.92□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 95.1 ms