RNA–Protein interactions for RNA: ENST00000512340.5

NR1I3-231, Transcript of nuclear receptor subfamily 1 group I member 3, human

TSL 1 (best)

Gene NR1I3, Length 891 nt, Biotype nonsense mediated decay.

RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
NR1I3-231	ENST00000512340	DNAH11	Q96DT5	4516 aa		4.89	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAT2	Q9NYQ8	4349 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	TRBV7-7	A0A0K0K1E9	115 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	IGIP	A6NJ69	53 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	SYCN	Q0VAF6	134 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	HIGD2B	Q4VC39	106 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	C5orf38	Q86SI9	138 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	LINC01561	Q8N1V8	128 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	C9orf163	Q8N9P6	203 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	CAMK2N2	Q96S95	79 aa		4.88	□□□□□ -1.63
NR1I3-231	ENST00000512340	DNAH2	Q9P225	4427 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	IGLV4-69	A0A075B6H9	119 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM236D	A0A1B0GTK5	79 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM229A	H3BQW9	127 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340		J3QQQ9	107 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM236C	P0DP71	79 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	KRTAP10-1	P60331	282 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	SPAG11B	Q08648	103 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	C15orf56	Q8N910	161 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	C2orf48	Q96LS8	159 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	CARD19	Q96LW7	228 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	AMELX	Q99217	191 aa		4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340	OPRPN	Q99935	248 aa	Predicted RBP	4.87	□□□□□ -1.63
NR1I3-231	ENST00000512340		A0A087WZ39	114 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	IGHV3OR16-9	A0A0B4J2B5	98 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	NDUFA1	O15239	70 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	TRAC	P01848	142 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	PFN2	P35080	140 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	UBE2D1	P51668	147 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	LINC00242	Q5T6M2	205 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	LINC01545	Q5VT33	79 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	ANKRD29	Q8N6D5	301 aa		4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	DMBT1	Q9UGM3	2413 aa	Predicted RBP	4.86	□□□□□ -1.63
NR1I3-231	ENST00000512340	DNAH17	Q9UFH2	4485 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	DYNC1H1	Q14204	4646 aa	Known RBP	4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM236A	A0A1B0GUQ0	79 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM236B	A0A1B0GV22	79 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	NDUFC2-KCTD14	E9PQ53	114 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	COX7C	P15954	63 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	FUS	P35637	526 aa	Known RBP eCLIP	4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	LINC01600	Q96MT4	127 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	CHAC1	Q9BUX1	264 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	LAMTOR3	Q9UHA4	124 aa		4.85	□□□□□ -1.63
NR1I3-231	ENST00000512340	PLA2G1B	P04054	148 aa	Known RBP	4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	CXCL5	P42830	114 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	PMAIP1	Q13794	54 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM19A3	Q7Z5A8	133 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	CEND1	Q8N111	149 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340		Q8N1X5	172 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	FAM19A2	Q8N3H0	131 aa		4.84	□□□□□ -1.63
NR1I3-231	ENST00000512340	PKD1	P98161	4303 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	FAM240A	A0A1B0GVK7	77 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	EPM2A	B3EWF7	344 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340		J3QL48	77 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	LEPROTL1	O95214	131 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	RPL13A	P40429	203 aa	Known RBP	4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	SFTA2	Q6UW10	78 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	SDIM1	Q6ZPB5	146 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340		Q6ZSA8	131 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	IFI27L1	Q96BM0	104 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	MRPL35	Q9NZE8	188 aa	Known RBP	4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	TOMM7	Q9P0U1	55 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	HERC1	Q15751	4861 aa		4.83	□□□□□ -1.64
NR1I3-231	ENST00000512340	HSPG2	P98160	4391 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340		A0A0J9YXV3	536 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	TRBV30	A0A0K0K1B3	111 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	SCGB1C2	P0DMR2	95 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	VPREB1	P12018	145 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	SMCP	P49901	116 aa	Predicted RBP	4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	COX6A2	Q02221	97 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	LINC00173	Q6ZV60	143 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340		Q8IZM0	81 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	C7orf33	Q8WU49	177 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	FAM104A	Q969W3	186 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	KRTAP4-5	Q9BYR2	181 aa		4.82	□□□□□ -1.64
NR1I3-231	ENST00000512340	TRAV12-1	A0A0B4J245	112 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340	IGKV2-24	A0A0C4DH68	120 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340	OXT	P01178	125 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340		Q6ZRU5	148 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340	COPS9	Q8WXC6	57 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340	CDKN2A-AS1	Q9UH64	79 aa		4.81	□□□□□ -1.64
NR1I3-231	ENST00000512340	IGLV5-45	A0A087WSX0	123 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340		F8VRH5	84 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	SLPI	P03973	132 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	RPL18A	Q02543	176 aa	Known RBP	4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	TMEM170B	Q5T4T1	132 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	ZC2HC1B	Q5TFG8	222 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	SCX	Q7RTU7	201 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	CIRBP-AS1	Q8TBR5	109 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	COX7B2	Q8TF08	81 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	URB1-AS1	Q96HZ7	61 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340	FAM30A	Q9NZY2	134 aa		4.8	□□□□□ -1.64
NR1I3-231	ENST00000512340		A0A096LNJ9	63 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	ATOX1	O00244	68 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	PLN	P26678	52 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	CIRBP	Q14011	172 aa	Known RBP	4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	LINC00528	Q8N1L1	170 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	SPACA4	Q8TDM5	124 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340	TP73-AS1	Q9UF72	201 aa		4.79	□□□□□ -1.64
NR1I3-231	ENST00000512340		A0A087WYN8	130 aa		4.78	□□□□□ -1.64

Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms