RNA–Protein interactions for RNA: ENST00000511496.5

LIMCH1-213, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 1 (best) BASIC

Gene LIMCH1, Length 3,439 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-213ENST00000511496 C8orf87E5RJ46 101 aa8.13□□□□□ -1.11
LIMCH1-213ENST00000511496 ST20-AS1Q8NBB2 130 aa8.12□□□□□ -1.11
LIMCH1-213ENST00000511496 DEFB124Q8NES8 71 aa8.12□□□□□ -1.11
LIMCH1-213ENST00000511496 ATP11AUNQ6ZP68 121 aa8.12□□□□□ -1.11
LIMCH1-213ENST00000511496 BSNQ9UPA5 3926 aa8.12□□□□□ -1.11
LIMCH1-213ENST00000511496 SLURP1P55000 103 aa8.11□□□□□ -1.11
LIMCH1-213ENST00000511496 A6NDX4 124 aa8.11□□□□□ -1.11
LIMCH1-213ENST00000511496 C11orf71Q6IPW1 123 aa8.11□□□□□ -1.11
LIMCH1-213ENST00000511496 MAP6D1Q9H9H5 199 aa8.11□□□□□ -1.11
LIMCH1-213ENST00000511496 PLA2G2AP14555 144 aa8.1□□□□□ -1.11
LIMCH1-213ENST00000511496 A0A096LPF7 62 aa8.09□□□□□ -1.11
LIMCH1-213ENST00000511496 ETDCA0A1B0GVM5 59 aa8.09□□□□□ -1.11
LIMCH1-213ENST00000511496 MYO9AB2RTY4 2548 aa8.09□□□□□ -1.11
LIMCH1-213ENST00000511496 Q8N9P0 234 aaPredicted RBP8.09□□□□□ -1.12
LIMCH1-213ENST00000511496 DEFB105AQ8NG35 78 aa8.09□□□□□ -1.12
LIMCH1-213ENST00000511496 CYP4F30PQ9H0H9 118 aa8.09□□□□□ -1.12
LIMCH1-213ENST00000511496 VPS13CQ709C8 3753 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 A6NN06 94 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 H3BQ85 93 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 COX17Q14061 63 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 XAGE1AQ9HD64 81 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 UNQ6190/PRO20217Q6UXQ8 127 aa8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 PHF5AQ7RTV0 110 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 ZCCHC13Q8WW36 166 aaKnown RBP8.08□□□□□ -1.12
LIMCH1-213ENST00000511496 B9D2Q9BPU9 175 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 KIAA0087Q14695 138 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 ATRXP46100 2492 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 CHD6Q8TD26 2715 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 IGLV6-57P01721 117 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 DEFB116Q30KQ4 102 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 LIMD2Q9BT23 127 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 ABCA2Q9BZC7 2435 aa8.07□□□□□ -1.12
LIMCH1-213ENST00000511496 C7orf65Q6ZTY9 151 aa8.06□□□□□ -1.12
LIMCH1-213ENST00000511496 C18orf65Q6ZTR6 163 aa8.06□□□□□ -1.12
LIMCH1-213ENST00000511496 A0A1W2PPR1 153 aa8.05□□□□□ -1.12
LIMCH1-213ENST00000511496 LINC00208Q96KT6 92 aa8.04□□□□□ -1.12
LIMCH1-213ENST00000511496 LCE6AA0A183 80 aa8.03□□□□□ -1.12
LIMCH1-213ENST00000511496 APCP25054 2843 aa8.03□□□□□ -1.12
LIMCH1-213ENST00000511496 ZFYVE26Q68DK2 2539 aa8.03□□□□□ -1.12
LIMCH1-213ENST00000511496 PLA2G2CQ5R387 149 aa8.03□□□□□ -1.12
LIMCH1-213ENST00000511496 SETD2Q9BYW2 2564 aaPredicted RBP8.02□□□□□ -1.12
LIMCH1-213ENST00000511496 DNAJC9-AS1A6NH13 148 aa8.02□□□□□ -1.13
LIMCH1-213ENST00000511496 IGHV4-59P01825 116 aa8.02□□□□□ -1.13
LIMCH1-213ENST00000511496 CHCHD10Q8WYQ3 142 aaPredicted RBP8.02□□□□□ -1.13
LIMCH1-213ENST00000511496 NBEAL2Q6ZNJ1 2754 aa8.02□□□□□ -1.13
LIMCH1-213ENST00000511496 NDUFB1O75438 58 aa8.01□□□□□ -1.13
LIMCH1-213ENST00000511496 CCL24O00175 119 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 DEFB130BP0DP73 79 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 DEFB130AP0DP74 79 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 K7EQZ3 153 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 OTOGLQ3ZCN5 2332 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 IGHV4-30-2A0A087WSY4 118 aa8□□□□□ -1.13
LIMCH1-213ENST00000511496 ANGP03950 147 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 ELOF1P60002 83 aaKnown RBP7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 SPAG11BQ08648 103 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 IGHV4-30-4P0DP06 118 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 MP68P56378 58 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 PRAC1Q96KF2 57 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 MDFIQ99750 246 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 CYSRT1A8MQ03 144 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 MOBPQ13875 183 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 WFDC13Q8IUB5 93 aa7.99□□□□□ -1.13
LIMCH1-213ENST00000511496 FSHBP01225 129 aa7.98□□□□□ -1.13
LIMCH1-213ENST00000511496 GYPEP15421 78 aa7.98□□□□□ -1.13
LIMCH1-213ENST00000511496 ODF3L2Q3SX64 289 aa7.98□□□□□ -1.13
LIMCH1-213ENST00000511496 NKAPP1Q8N9T2 125 aa7.98□□□□□ -1.13
LIMCH1-213ENST00000511496 PTPN13Q12923 2485 aa7.97□□□□□ -1.13
LIMCH1-213ENST00000511496 CEP295Q9C0D2 2601 aa7.97□□□□□ -1.13
LIMCH1-213ENST00000511496 IGHV4-61A0A0C4DH41 118 aa7.97□□□□□ -1.13
LIMCH1-213ENST00000511496 CDC42SE1Q9NRR8 79 aa7.97□□□□□ -1.13
LIMCH1-213ENST00000511496 DEFB114Q30KQ6 69 aa7.96□□□□□ -1.13
LIMCH1-213ENST00000511496 Q75L30 129 aa7.96□□□□□ -1.13
LIMCH1-213ENST00000511496 KPRPQ5T749 579 aaPredicted RBP7.96□□□□□ -1.14
LIMCH1-213ENST00000511496 BDP1A6H8Y1 2624 aa7.96□□□□□ -1.14
LIMCH1-213ENST00000511496 USP9YO00507 2555 aaPredicted RBP7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 NBPF19A0A087WUL8 3843 aa7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 DSCR10P59022 87 aa7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 WFDC10BQ8IUB3 73 aa7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 WFDC10AQ9H1F0 79 aa7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 NF1P21359 2839 aa7.95□□□□□ -1.14
LIMCH1-213ENST00000511496 REG3AQ06141 175 aa7.94□□□□□ -1.14
LIMCH1-213ENST00000511496 NIPBLQ6KC79 2804 aaeCLIP7.94□□□□□ -1.14
LIMCH1-213ENST00000511496 DEFB112Q30KQ8 113 aa7.93□□□□□ -1.14
LIMCH1-213ENST00000511496 A0A1B0GUV1 79 aa7.93□□□□□ -1.14
LIMCH1-213ENST00000511496 F8P00451 2351 aa7.93□□□□□ -1.14
LIMCH1-213ENST00000511496 LOC101927531A0A1B0GV80 90 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 A0A1W2PNM2 257 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 FBXL19-AS1Q494R0 122 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 SPAG11AQ6PDA7 123 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 LINC00528Q8N1L1 170 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 C16orf74Q96GX8 76 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 TEX15Q9BXT5 2789 aa7.92□□□□□ -1.14
LIMCH1-213ENST00000511496 USP9XQ93008 2570 aaPredicted RBP7.91□□□□□ -1.14
LIMCH1-213ENST00000511496 LINC00313P59037 77 aa7.91□□□□□ -1.14
LIMCH1-213ENST00000511496 CELSR2Q9HCU4 2923 aa7.9□□□□□ -1.14
LIMCH1-213ENST00000511496 A0A0J9YWU9 116 aa7.9□□□□□ -1.14
LIMCH1-213ENST00000511496 NCOR2Q9Y618 2525 aa7.9□□□□□ -1.15
LIMCH1-213ENST00000511496 FBN2P35556 2912 aa7.9□□□□□ -1.15
LIMCH1-213ENST00000511496 Q8N377 158 aa7.89□□□□□ -1.15
LIMCH1-213ENST00000511496 ZFHX2Q9C0A1 2572 aaPredicted RBP7.89□□□□□ -1.15
Retrieved 100 of 20,778 RNA–protein pairs in 42.8 ms