RNA–Protein interactions for RNA: ENST00000507906.5

USP53-204, Transcript of ubiquitin specific peptidase 53, humanhuman

TSL 4

Gene USP53, Length 546 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP53-204ENST00000507906 TMEM263Q8WUH6 116 aaKnown RBP1.06□□□□□ -2.24
USP53-204ENST00000507906 AMELXQ99217 191 aa1.06□□□□□ -2.24
USP53-204ENST00000507906 MRPL35Q9NZE8 188 aaKnown RBP1.06□□□□□ -2.24
USP53-204ENST00000507906 TIMM8BQ9Y5J9 83 aaPredicted RBP1.06□□□□□ -2.24
USP53-204ENST00000507906 URB1O60287 2271 aaKnown RBP1.05□□□□□ -2.24
USP53-204ENST00000507906 DOPEY2Q9Y3R5 2298 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 PLCE1Q9P212 2302 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 TRBV30A0A0K0K1B3 111 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 ZNF815PA8K554 130 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 ACYP1P07311 99 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 PDE6GP18545 87 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 PLNP26678 52 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 CKS2P33552 79 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 RPL37AP61513 92 aaKnown RBP1.05□□□□□ -2.24
USP53-204ENST00000507906 UBE2L3P68036 154 aaKnown RBP1.05□□□□□ -2.24
USP53-204ENST00000507906 CCL8P80075 99 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 ATXN8Q156A1 80 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 Q6JHZ5 121 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 Q8N6K4 173 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 NXT2Q9NPJ8 142 aaKnown RBP1.05□□□□□ -2.24
USP53-204ENST00000507906 PRO1854Q9UHT4 67 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 A0A0C4DFX4 3053 aa1.05□□□□□ -2.24
USP53-204ENST00000507906 FAM223BA6NKX1 122 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 IQCF6A8MYZ5 107 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 F8VRH5 84 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 H7BZZ5 65 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 CD52P31358 61 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 CRIP1P50238 77 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 NPC2P61916 151 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 LYPD5Q6UWN5 251 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 SPTSSAQ969W0 71 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 CNFNQ9BYD5 112 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 TMEM14BQ9NUH8 114 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 MRPL36Q9P0J6 103 aaKnown RBP1.04□□□□□ -2.24
USP53-204ENST00000507906 LINC00474Q9P2X8 69 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 PCNTO95613 3336 aa1.04□□□□□ -2.24
USP53-204ENST00000507906 FBN3Q75N90 2809 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 TMEM30CPA0ZSE6 113 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 IGIPA6NJ69 53 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 BCE1O60756 84 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 NDUFA3O95167 84 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 PRB4P10163 310 aaPredicted RBP1.03□□□□□ -2.24
USP53-204ENST00000507906 PRCDQ00LT1 54 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 RHOHQ15669 191 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 C10orf113Q5VZT2 155 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 FAM223AQ8IWN6 122 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 UBE2D4Q9Y2X8 147 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 Q9Y3F1 56 aa1.03□□□□□ -2.24
USP53-204ENST00000507906 ABCA4P78363 2273 aa1.03□□□□□ -2.25
USP53-204ENST00000507906 A0A087WVE0 104 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 FAM186AA6NE01 2351 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 NUPR2A6NF83 97 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 I3L3M4 83 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 CCKP06307 115 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 CENPFP49454 3210 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 ATP5EP56381 51 aaPredicted RBP1.02□□□□□ -2.25
USP53-204ENST00000507906 KLKP1Q107X0 134 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 DEFB110Q30KQ9 67 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 RPL39P5Q59GN2 51 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 MUSTN1Q8IVN3 82 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 SMIM2Q9BVW6 85 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 DYNLRB1Q9NP97 96 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 NDUFA4L2Q9NRX3 87 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 WNK2Q9Y3S1 2297 aa1.02□□□□□ -2.25
USP53-204ENST00000507906 CACNA1EQ15878 2313 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 AHCTF1Q8WYP5 2266 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 TRAV13-2A0A0B4J235 113 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 DEFB108AA8MXU0 73 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 C10orf142B7Z368 130 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 F8WEM9 126 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 M0R1W7 72 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 M0R3E3 92 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 TFF1P04155 84 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 PLGLAQ15195 96 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 VMO1Q7Z5L0 202 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 C20orf197Q8N268 126 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 COPS9Q8WXC6 57 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 BPESC1Q9GZL8 116 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 LINC00846Q9NV44 126 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 SPTBN2O15020 2390 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 COL6A3P12111 3177 aa1.01□□□□□ -2.25
USP53-204ENST00000507906 SPTBN1Q01082 2364 aaKnown RBP1□□□□□ -2.25
USP53-204ENST00000507906 TRBV7-4A0A0J9YYF1 115 aa1□□□□□ -2.25
USP53-204ENST00000507906 TRBV10-3A0A0K0K1G6 114 aa1□□□□□ -2.25
USP53-204ENST00000507906 NDUFC1O43677 76 aa1□□□□□ -2.25
USP53-204ENST00000507906 COX6CP09669 75 aa1□□□□□ -2.25
USP53-204ENST00000507906 SAA2P0DJI9 122 aaPredicted RBP1□□□□□ -2.25
USP53-204ENST00000507906 RPL39P62891 51 aaKnown RBP1□□□□□ -2.25
USP53-204ENST00000507906 RBM3P98179 157 aaKnown RBP1□□□□□ -2.25
USP53-204ENST00000507906 PRB3Q04118 309 aaPredicted RBP1□□□□□ -2.25
USP53-204ENST00000507906 WT1-ASQ06250 92 aa1□□□□□ -2.25
USP53-204ENST00000507906 ASB16-AS1Q495Z4 193 aa1□□□□□ -2.25
USP53-204ENST00000507906 ATP5EP2Q5VTU8 51 aa1□□□□□ -2.25
USP53-204ENST00000507906 TMEM167AQ8TBQ9 72 aa1□□□□□ -2.25
USP53-204ENST00000507906 RPL39LQ96EH5 51 aaKnown RBP1□□□□□ -2.25
USP53-204ENST00000507906 TMEM141Q96I45 108 aa1□□□□□ -2.25
USP53-204ENST00000507906 GOLGB1Q14789 3259 aaKnown RBP1□□□□□ -2.25
USP53-204ENST00000507906 PCNX1Q96RV3 2341 aa0.99□□□□□ -2.25
USP53-204ENST00000507906 PKDREJQ9NTG1 2253 aa0.99□□□□□ -2.25
USP53-204ENST00000507906 IGKV2D-29A0A075B6S2 120 aaPredicted RBP0.99□□□□□ -2.25
Retrieved 100 of 20,778 RNA–protein pairs in 49.5 ms