RNA–Protein interactions for RNA: ENST00000506098.5

NUP54-204, Transcript of nucleoporin 54, humanhuman

TSL 4

Gene NUP54, Length 548 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP54-204ENST00000506098 ZNF22P17026 224 aaPredicted RBP4.79□□□□□ -1.64
NUP54-204ENST00000506098 PLNP26678 52 aa4.79□□□□□ -1.64
NUP54-204ENST00000506098 RPL13AP40429 203 aaKnown RBP4.79□□□□□ -1.64
NUP54-204ENST00000506098 HRCT1Q6UXD1 115 aa4.79□□□□□ -1.64
NUP54-204ENST00000506098 Q6ZRN7 208 aaPredicted RBP4.79□□□□□ -1.64
NUP54-204ENST00000506098 CEND1Q8N111 149 aa4.79□□□□□ -1.64
NUP54-204ENST00000506098 CHAC1Q9BUX1 264 aa4.79□□□□□ -1.64
NUP54-204ENST00000506098 Q9HAA7 133 aa4.79□□□□□ -1.64
NUP54-204ENST00000506098 IGKV2D-24A0A075B6R9 120 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 M0R2N4 97 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 PFN2P35080 140 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 XCL1P47992 114 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 C6orf223Q8N319 242 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 CARD19Q96LW7 228 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 CDKN2A-AS1Q9UH64 79 aa4.78□□□□□ -1.64
NUP54-204ENST00000506098 DNAH17Q9UFH2 4485 aa4.78□□□□□ -1.65
NUP54-204ENST00000506098 TMEM223A0PJW6 202 aa4.77□□□□□ -1.65
NUP54-204ENST00000506098 COX7A2LO14548 114 aa4.77□□□□□ -1.65
NUP54-204ENST00000506098 LCE2AQ5TA79 106 aaPredicted RBP4.77□□□□□ -1.65
NUP54-204ENST00000506098 LCE2CQ5TA81 110 aa4.77□□□□□ -1.65
NUP54-204ENST00000506098 C1orf134Q5TEV5 83 aa4.77□□□□□ -1.65
NUP54-204ENST00000506098 MAPKAPK5-AS1Q8N8E1 139 aa4.77□□□□□ -1.65
NUP54-204ENST00000506098 IGLV5-39A0A0G2JS06 123 aa4.76□□□□□ -1.65
NUP54-204ENST00000506098 SMIM1B2RUZ4 78 aa4.76□□□□□ -1.65
NUP54-204ENST00000506098 ATOX1O00244 68 aa4.76□□□□□ -1.65
NUP54-204ENST00000506098 TMEM170BQ5T4T1 132 aa4.76□□□□□ -1.65
NUP54-204ENST00000506098 C5orf38Q86SI9 138 aa4.76□□□□□ -1.65
NUP54-204ENST00000506098 IGHV3-64A0A075B6Q5 118 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 IGHV1-58A0A0C4DH39 117 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 A0A0U1RQV1 116 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 FAM236DA0A1B0GTK5 79 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 LRCOL1A6NCL2 159 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 FAM236CP0DP71 79 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 PMAIP1Q13794 54 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 C15orf56Q8N910 161 aa4.75□□□□□ -1.65
NUP54-204ENST00000506098 SMIM26A0A096LP01 95 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 GVQW2A0A096LPI5 108 aaPredicted RBP4.74□□□□□ -1.65
NUP54-204ENST00000506098 FAM236AA0A1B0GUQ0 79 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 FAM236BA0A1B0GV22 79 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 RTL8CO15255 209 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 PSCAO43653 123 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 KIAA0087Q14695 138 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 Q8IZM0 81 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 PKIGQ9Y2B9 76 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 SERP1Q9Y6X1 66 aa4.74□□□□□ -1.65
NUP54-204ENST00000506098 HECTD4Q9Y4D8 3996 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 FAT2Q9NYQ8 4349 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 USP17L23D6RBM5 183 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 LEPROTO15243 131 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 VPREB1P12018 145 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 HERVK_113P61574 105 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 Q6ZRU5 148 aa4.73□□□□□ -1.65
NUP54-204ENST00000506098 KMT2CQ8NEZ4 4911 aaKnown RBP4.72□□□□□ -1.65
NUP54-204ENST00000506098 MYMXA0A1B0GTQ4 84 aa4.72□□□□□ -1.65
NUP54-204ENST00000506098 FXYD2P54710 66 aa4.72□□□□□ -1.65
NUP54-204ENST00000506098 SRSF9Q13242 221 aaKnown RBP eCLIP4.72□□□□□ -1.65
NUP54-204ENST00000506098 C14orf177Q52M58 125 aa4.72□□□□□ -1.65
NUP54-204ENST00000506098 COX7B2Q8TF08 81 aa4.72□□□□□ -1.65
NUP54-204ENST00000506098 NTN5Q8WTR8 489 aaPredicted RBP4.72□□□□□ -1.65
NUP54-204ENST00000506098 C2orf48Q96LS8 159 aa4.72□□□□□ -1.65
NUP54-204ENST00000506098 NHP2Q9NX24 153 aaKnown RBP4.72□□□□□ -1.65
NUP54-204ENST00000506098 PKD1P98161 4303 aa4.71□□□□□ -1.65
NUP54-204ENST00000506098 A0A087WTM6 91 aa4.71□□□□□ -1.66
NUP54-204ENST00000506098 IGKV2D-26A0A0A0MRZ7 120 aa4.71□□□□□ -1.66
NUP54-204ENST00000506098 GHRHP01286 108 aa4.71□□□□□ -1.66
NUP54-204ENST00000506098 HIST1H4AP62805 103 aaKnown RBP4.71□□□□□ -1.66
NUP54-204ENST00000506098 SPAG11BQ08648 103 aa4.71□□□□□ -1.66
NUP54-204ENST00000506098 LINC00643Q86TS7 51 aa4.71□□□□□ -1.66
NUP54-204ENST00000506098 PRSS2P07478 247 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 ATP5EP56381 51 aaPredicted RBP4.7□□□□□ -1.66
NUP54-204ENST00000506098 TSPEAR-AS2P59090 65 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 CNBPP62633 177 aaKnown RBP4.7□□□□□ -1.66
NUP54-204ENST00000506098 HIGD2BQ4VC39 106 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 SFTA2Q6UW10 78 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 PRR15Q8IV56 129 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 Q8N814 137 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 ZNF625Q96I27 306 aaPredicted RBP4.7□□□□□ -1.66
NUP54-204ENST00000506098 TOMM7Q9P0U1 55 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 RYR2Q92736 4967 aa4.7□□□□□ -1.66
NUP54-204ENST00000506098 TRBV7-6A0A0J9YX20 115 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 LECT2O14960 151 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 NDUFA1O15239 70 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 SLPIP03973 132 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 LGALS3P17931 250 aaKnown RBP4.69□□□□□ -1.66
NUP54-204ENST00000506098 NPC2P61916 151 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 MRPL55Q7Z7F7 128 aaKnown RBP4.69□□□□□ -1.66
NUP54-204ENST00000506098 NDUFA12Q9UI09 145 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 DNAH11Q96DT5 4516 aa4.69□□□□□ -1.66
NUP54-204ENST00000506098 TRBV30A0A0K0K1B3 111 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 H3BT86 120 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 SLC25A20O43772 301 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 SYCNQ0VAF6 134 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 C2orf82Q6UX34 121 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 UNQ6190/PRO20217Q6UXQ8 127 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 SDIM1Q6ZPB5 146 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 PCP2Q8IVA1 136 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 SERP2Q8N6R1 65 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 CAMK2N2Q96S95 79 aa4.68□□□□□ -1.66
NUP54-204ENST00000506098 TRAV16A0A0A6YYK6 109 aaPredicted RBP4.67□□□□□ -1.66
NUP54-204ENST00000506098 BCE1O60756 84 aa4.67□□□□□ -1.66
Retrieved 100 of 20,778 RNA–protein pairs in 108.8 ms