RNA–Protein interactions for RNA: ENST00000498259.1

SF3A1-210, Transcript of splicing factor 3a subunit 1, humanhuman

TSL 2

Gene SF3A1, Length 875 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SF3A1-210ENST00000498259 C9orf116Q5BN46 136 aaPredicted RBP5.55□□□□□ -1.52
SF3A1-210ENST00000498259 SOSTDC1Q6X4U4 206 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 LINC00476Q8WZB0 136 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 KRTAP1-5Q9BYS1 174 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 LINC00474Q9P2X8 69 aa5.55□□□□□ -1.52
SF3A1-210ENST00000498259 H0YGX0 51 aa5.54□□□□□ -1.52
SF3A1-210ENST00000498259 K7EP34 96 aa5.54□□□□□ -1.52
SF3A1-210ENST00000498259 M0R2N4 97 aa5.54□□□□□ -1.52
SF3A1-210ENST00000498259 RPL18AQ02543 176 aaKnown RBP5.54□□□□□ -1.52
SF3A1-210ENST00000498259 Q6ZR54 194 aa5.54□□□□□ -1.52
SF3A1-210ENST00000498259 FBN3Q75N90 2809 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 LECT2O14960 151 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 RPL28P46779 137 aaKnown RBP5.53□□□□□ -1.52
SF3A1-210ENST00000498259 SMCPP49901 116 aaPredicted RBP5.53□□□□□ -1.52
SF3A1-210ENST00000498259 ATXN8Q156A1 80 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 GAGE2EQ4V326 116 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 LINC00528Q8N1L1 170 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 NKAPP1Q8N9T2 125 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 GAGE2DQ9UEU5 116 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 PLA2G2DQ9UNK4 145 aa5.53□□□□□ -1.52
SF3A1-210ENST00000498259 M0R378 163 aa5.52□□□□□ -1.53
SF3A1-210ENST00000498259 PRKDCP78527 4128 aaKnown RBP5.52□□□□□ -1.53
SF3A1-210ENST00000498259 IGKV2-28A0A075B6P5 120 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 LRCOL1A6NCL2 159 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 C16orf90A8MZG2 172 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 F8W1H4 67 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 EIF4EBP3O60516 100 aaPredicted RBP5.51□□□□□ -1.53
SF3A1-210ENST00000498259 GHRHP01286 108 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 IGKV2D-28P01615 120 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 Q6ZRN7 208 aaPredicted RBP5.51□□□□□ -1.53
SF3A1-210ENST00000498259 Q6ZRP5 223 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 LINC00337Q8N6G1 96 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 Q8N814 137 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 NAA38Q9BRA0 125 aaKnown RBP5.51□□□□□ -1.53
SF3A1-210ENST00000498259 XAGE1AQ9HD64 81 aa5.51□□□□□ -1.53
SF3A1-210ENST00000498259 TRIAP1O43715 76 aa5.5□□□□□ -1.53
SF3A1-210ENST00000498259 GAGE2BQ13066 116 aa5.5□□□□□ -1.53
SF3A1-210ENST00000498259 C9orf163Q8N9P6 203 aa5.5□□□□□ -1.53
SF3A1-210ENST00000498259 IGLV2-33A0A075B6J2 118 aaPredicted RBP5.49□□□□□ -1.53
SF3A1-210ENST00000498259 A0A087WTM6 91 aa5.49□□□□□ -1.53
SF3A1-210ENST00000498259 NCR3O14931 201 aa5.49□□□□□ -1.53
SF3A1-210ENST00000498259 DNAL4O96015 105 aa5.49□□□□□ -1.53
SF3A1-210ENST00000498259 SLPIP03973 132 aa5.49□□□□□ -1.53
SF3A1-210ENST00000498259 SMIM11BQ8TCY0 68 aa5.49□□□□□ -1.53
SF3A1-210ENST00000498259 DYNC2H1Q8NCM8 4307 aaKnown RBP5.48□□□□□ -1.53
SF3A1-210ENST00000498259 IGLV5-37A0A075B6J1 123 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 TRBV7-6A0A0J9YX20 115 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 A0A1B0GX51 115 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 H3BQ85 93 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 SLC25A20O43772 301 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 IGLV6-57P01721 117 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 VPREB1P12018 145 aa5.48□□□□□ -1.53
SF3A1-210ENST00000498259 DNAH7Q8WXX0 4024 aa5.47□□□□□ -1.53
SF3A1-210ENST00000498259 TRAV23DV6A0A075B6W5 121 aa5.47□□□□□ -1.53
SF3A1-210ENST00000498259 H3BMG7 143 aa5.47□□□□□ -1.53
SF3A1-210ENST00000498259 TRACP01848 142 aa5.47□□□□□ -1.53
SF3A1-210ENST00000498259 DPH3Q96FX2 82 aa5.47□□□□□ -1.53
SF3A1-210ENST00000498259 LST1O00453 97 aa5.46□□□□□ -1.54
SF3A1-210ENST00000498259 TCL1BO95988 128 aa5.46□□□□□ -1.54
SF3A1-210ENST00000498259 PRR3P79522 188 aaKnown RBP5.46□□□□□ -1.54
SF3A1-210ENST00000498259 WFDC2Q14508 124 aa5.46□□□□□ -1.54
SF3A1-210ENST00000498259 C9orf129Q5T035 196 aaKnown RBP5.46□□□□□ -1.54
SF3A1-210ENST00000498259 DIRC1Q969H9 104 aa5.46□□□□□ -1.54
SF3A1-210ENST00000498259 TENM2Q9NT68 2774 aa5.45□□□□□ -1.54
SF3A1-210ENST00000498259 M0QXV9 152 aa5.45□□□□□ -1.54
SF3A1-210ENST00000498259 ZNF73O43830 326 aaPredicted RBP5.45□□□□□ -1.54
SF3A1-210ENST00000498259 MRPL55Q7Z7F7 128 aaKnown RBP5.45□□□□□ -1.54
SF3A1-210ENST00000498259 IGLV5-52A0A0A0MRZ9 124 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 IGKV2-24A0A0C4DH68 120 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 TRBV10-3A0A0K0K1G6 114 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 PRYO14603 147 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 LINC01620Q4KN68 170 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 C6orf99Q4VX62 202 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 KCNQ1DNQ9H478 68 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 C22orf24Q9Y442 160 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 CSMD3Q7Z407 3707 aa5.44□□□□□ -1.54
SF3A1-210ENST00000498259 A0A096LNI7 61 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 LCE6AA0A183 80 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 C9JAW5 83 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 H3BT86 120 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 J3QR89 54 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 RTL8CO15255 209 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 OCIAD2Q56VL3 154 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 SDIM1Q6ZPB5 146 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 LINC00336Q6ZUF6 198 aa5.43□□□□□ -1.54
SF3A1-210ENST00000498259 INAFM2P0DMQ5 153 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 COX7BP24311 80 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 FAM19A5Q7Z5A7 132 aaPredicted RBP5.42□□□□□ -1.54
SF3A1-210ENST00000498259 ANKRD29Q8N6D5 301 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 C7orf33Q8WU49 177 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 CLEC2BQ92478 149 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 TGP01266 2768 aa5.42□□□□□ -1.54
SF3A1-210ENST00000498259 IGLV1-50A0A075B6I6 118 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 ETDCA0A1B0GVM5 59 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 hADV29S1A0JD25 119 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 TMEM256-PLSCR3K7ERE1 68 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 SERTAD4-AS1Q5TG53 156 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 Q8NDZ9 215 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 ORMDL1Q9P0S3 153 aa5.41□□□□□ -1.54
SF3A1-210ENST00000498259 DHRS4-AS1Q9P1J3 65 aa5.41□□□□□ -1.54
Retrieved 100 of 20,778 RNA–protein pairs in 77.8 ms