RNA–Protein interactions for RNA: ENST00000498143.5

USP54-216, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 1 (best)

Gene USP54, Length 4,313 nt, Biotype retained intron, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-216ENST00000498143 RNASE4P34096 147 aaKnown RBP3.67□□□□□ -1.82
USP54-216ENST00000498143 LINC00313P59037 77 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 HIGD2BQ4VC39 106 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 LINC00322Q6ZN03 302 aaPredicted RBP3.67□□□□□ -1.82
USP54-216ENST00000498143 NDUFA4L2Q9NRX3 87 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 KIAA1549LQ6ZVL6 1849 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 LECT2O14960 151 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 IGHV3-30P01768 117 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 IGHV3-30-5P0DP03 117 aa3.67□□□□□ -1.82
USP54-216ENST00000498143 LCE2BO14633 110 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 PHF5AQ7RTV0 110 aaKnown RBP3.66□□□□□ -1.82
USP54-216ENST00000498143 HIGD2AQ9BW72 106 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 G3V318 75 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 LUZP6Q538Z0 58 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 C10orf99Q6UWK7 81 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 MSRB1Q9NZV6 116 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 UBE2D4Q9Y2X8 147 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 P0C879 139 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 DEFB131AP59861 70 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 PATE2Q6UY27 113 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 LINC00588Q9Y4M8 146 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 IGLV2-11P01706 119 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 CDC42SE1Q9NRR8 79 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 KAAG1Q9UBP8 84 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 KLK9Q9UKQ9 250 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 S4R3C0 116 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 DSCAML1Q8TD84 2053 aa3.66□□□□□ -1.82
USP54-216ENST00000498143 IGHV3-74A0A0B4J1X5 117 aa3.65□□□□□ -1.82
USP54-216ENST00000498143 H7BZZ5 65 aa3.65□□□□□ -1.82
USP54-216ENST00000498143 TRAV22A0A0B4J277 110 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 IGKV1-16P04430 117 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 ELOF1P60002 83 aaKnown RBP3.65□□□□□ -1.83
USP54-216ENST00000498143 Q8N3U1 123 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 CTSZQ9UBR2 303 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 IGLV2-14P01704 120 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 IGHV3-30-3P0DP02 117 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 Q1T7F1 81 aa3.65□□□□□ -1.83
USP54-216ENST00000498143 IGKV1OR2-108A0A075B7D4 117 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 IGHV3-66A0A0C4DH42 116 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 H3BRN7 92 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 C18orf65Q6ZTR6 163 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 Q8N9L7 120 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 TMEM263Q8WUH6 116 aaKnown RBP3.64□□□□□ -1.83
USP54-216ENST00000498143 IGHV7-4-1A0A0J9YVY3 117 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 LOC101927531A0A1B0GV80 90 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 IGHV3OR16-8A0A075B7F1 116 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 TRBV10-1A0A0K0K1A3 114 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 INSP01308 110 aa3.64□□□□□ -1.83
USP54-216ENST00000498143 RAI1Q7Z5J4 1906 aaPredicted RBP3.64□□□□□ -1.83
USP54-216ENST00000498143 IGHV3-23P01764 117 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 WT1-ASQ06250 92 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 IGKV3OR2-268A0A0C4DH90 116 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 IGFL4Q6B9Z1 124 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 C11orf72Q8NBR9 251 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 CPAMD8Q8IZJ3 1885 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 UNQ9165/PRO28630Q6UXU0 137 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 IGLV2-33A0A075B6J2 118 aaPredicted RBP3.63□□□□□ -1.83
USP54-216ENST00000498143 A0A096LNJ9 63 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 SYCNQ0VAF6 134 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 Q75L30 129 aa3.63□□□□□ -1.83
USP54-216ENST00000498143 Q8N7P7 452 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 TRGV4A0A0C4DH28 118 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 Q6ZTC4 211 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 ZNF491Q8N8L2 437 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 RPL39LQ96EH5 51 aaKnown RBP3.62□□□□□ -1.83
USP54-216ENST00000498143 TANC2Q9HCD6 1990 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 CHTF8P0CG12 524 aa3.62□□□□□ -1.83
USP54-216ENST00000498143 SND1-IT1Q9HBX3 110 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 VWFP04275 2813 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 CRIP3Q6Q6R5 217 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 LINC00337Q8N6G1 96 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 NBDYA0A0U1RRE5 68 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 NDUFA4O00483 81 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 FP248Q71RG6 208 aaPredicted RBP3.61□□□□□ -1.83
USP54-216ENST00000498143 Q8N2B8 174 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 RNF5Q99942 180 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 MSMPQ1L6U9 139 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 LINC00846Q9NV44 126 aa3.61□□□□□ -1.83
USP54-216ENST00000498143 ASPMQ8IZT6 3477 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 RPL39P62891 51 aaKnown RBP3.6□□□□□ -1.83
USP54-216ENST00000498143 COX7B2Q8TF08 81 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 RNF185Q96GF1 192 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 M0R2T5 61 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 NCR3O14931 201 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 IGLV1-51P01701 117 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 LINC01547P58512 204 aaPredicted RBP3.6□□□□□ -1.83
USP54-216ENST00000498143 RPL37AP61513 92 aaKnown RBP3.6□□□□□ -1.83
USP54-216ENST00000498143 ASB16-AS1Q495Z4 193 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 CAMK2N1Q7Z7J9 78 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 IGKV1D-17A0A075B6S4 117 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 C14orf177Q52M58 125 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 C19orf73Q9NVV2 129 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 LENEPQ9Y5L5 61 aa3.6□□□□□ -1.83
USP54-216ENST00000498143 ETDCA0A1B0GVM5 59 aa3.59□□□□□ -1.83
USP54-216ENST00000498143 IGHV4-28A0A0C4DH34 117 aa3.59□□□□□ -1.83
USP54-216ENST00000498143 BRWD1-AS2P59051 145 aa3.59□□□□□ -1.83
USP54-216ENST00000498143 CELSR1Q9NYQ6 3014 aa3.59□□□□□ -1.83
USP54-216ENST00000498143 PCNX3Q9H6A9 2034 aa3.59□□□□□ -1.84
USP54-216ENST00000498143 Q6ZQY7 126 aa3.59□□□□□ -1.84
USP54-216ENST00000498143 ZNF833PQ6ZTB9 187 aa3.59□□□□□ -1.84
Retrieved 100 of 20,778 RNA–protein pairs in 30.7 ms