RNA–Protein interactions for RNA: ENST00000496567.5

C9orf3-222, Transcript of chromosome 9 open reading frame 3, humanhuman

TSL 5

Gene C9orf3, Length 1,575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
C9orf3-222ENST00000496567 CDK2AP2O75956 126 aa13.79□□□□□ -0.2
C9orf3-222ENST00000496567 SCXQ7RTU7 201 aa13.79□□□□□ -0.2
C9orf3-222ENST00000496567 CIRBP-AS1Q8TBR5 109 aa13.79□□□□□ -0.2
C9orf3-222ENST00000496567 CTAG1AP78358 180 aa13.78□□□□□ -0.2
C9orf3-222ENST00000496567 PLAC8Q9NZF1 115 aa13.78□□□□□ -0.2
C9orf3-222ENST00000496567 HIGD1BQ9P298 99 aa13.78□□□□□ -0.2
C9orf3-222ENST00000496567 TMEM238C9JI98 176 aa13.77□□□□□ -0.21
C9orf3-222ENST00000496567 XGP55808 180 aa13.77□□□□□ -0.21
C9orf3-222ENST00000496567 ADAMTSL4-AS1Q5T5F5 129 aa13.76□□□□□ -0.21
C9orf3-222ENST00000496567 DAND5Q8N907 189 aa13.76□□□□□ -0.21
C9orf3-222ENST00000496567 LITAFQ99732 161 aa13.76□□□□□ -0.21
C9orf3-222ENST00000496567 A0A1W2PNN7 141 aa13.75□□□□□ -0.21
C9orf3-222ENST00000496567 FAM168BA1KXE4 195 aa13.75□□□□□ -0.21
C9orf3-222ENST00000496567 HAMPP81172 84 aa13.75□□□□□ -0.21
C9orf3-222ENST00000496567 PLA2G2DQ9UNK4 145 aa13.75□□□□□ -0.21
C9orf3-222ENST00000496567 FAM19A5Q7Z5A7 132 aaPredicted RBP13.74□□□□□ -0.21
C9orf3-222ENST00000496567 EPM2AB3EWF7 344 aa13.73□□□□□ -0.21
C9orf3-222ENST00000496567 LOC107984156A0A0G2JMH3 177 aa13.72□□□□□ -0.21
C9orf3-222ENST00000496567 ARL17AQ8IVW1 177 aa13.72□□□□□ -0.21
C9orf3-222ENST00000496567 RPL24P83731 157 aaKnown RBP13.71□□□□□ -0.21
C9orf3-222ENST00000496567 Q6ZVH6 145 aa13.71□□□□□ -0.21
C9orf3-222ENST00000496567 SPANXDQ9BXN6 97 aa13.71□□□□□ -0.21
C9orf3-222ENST00000496567 SPANXCQ9NY87 97 aa13.71□□□□□ -0.21
C9orf3-222ENST00000496567 APOBP04114 4563 aaKnown RBP13.71□□□□□ -0.22
C9orf3-222ENST00000496567 SERTAD4-AS1Q5TG53 156 aa13.71□□□□□ -0.22
C9orf3-222ENST00000496567 COPS9Q8WXC6 57 aa13.7□□□□□ -0.22
C9orf3-222ENST00000496567 KRTAP7-1Q8IUC3 87 aa13.69□□□□□ -0.22
C9orf3-222ENST00000496567 M0QXV9 152 aa13.68□□□□□ -0.22
C9orf3-222ENST00000496567 NPC2P61916 151 aa13.68□□□□□ -0.22
C9orf3-222ENST00000496567 HSD52Q0P140 79 aa13.68□□□□□ -0.22
C9orf3-222ENST00000496567 LINC00308Q8TCZ7 52 aa13.68□□□□□ -0.22
C9orf3-222ENST00000496567 HIST1H4GQ99525 98 aa13.68□□□□□ -0.22
C9orf3-222ENST00000496567 SPANXB1Q9NS25 103 aaPredicted RBP13.68□□□□□ -0.22
C9orf3-222ENST00000496567 IGLV5-37A0A075B6J1 123 aa13.67□□□□□ -0.22
C9orf3-222ENST00000496567 IFITM1P13164 125 aa13.67□□□□□ -0.22
C9orf3-222ENST00000496567 NKAPP1Q8N9T2 125 aa13.67□□□□□ -0.22
C9orf3-222ENST00000496567 C22orf24Q9Y442 160 aa13.67□□□□□ -0.22
C9orf3-222ENST00000496567 BIRC6Q9NR09 4857 aa13.67□□□□□ -0.22
C9orf3-222ENST00000496567 VPREB1P12018 145 aa13.66□□□□□ -0.22
C9orf3-222ENST00000496567 HINT1P49773 126 aaPredicted RBP13.66□□□□□ -0.22
C9orf3-222ENST00000496567 SRSF9Q13242 221 aaKnown RBP eCLIP13.66□□□□□ -0.22
C9orf3-222ENST00000496567 SOSTDC1Q6X4U4 206 aa13.66□□□□□ -0.22
C9orf3-222ENST00000496567 TAL2Q16559 108 aa13.65□□□□□ -0.22
C9orf3-222ENST00000496567 LBHQ53QV2 105 aaPredicted RBP13.64□□□□□ -0.23
C9orf3-222ENST00000496567 PHF5AQ7RTV0 110 aaKnown RBP13.64□□□□□ -0.23
C9orf3-222ENST00000496567 C7orf33Q8WU49 177 aa13.64□□□□□ -0.23
C9orf3-222ENST00000496567 PPDPFQ9H3Y8 114 aa13.64□□□□□ -0.23
C9orf3-222ENST00000496567 EIF4EBP3O60516 100 aaPredicted RBP13.63□□□□□ -0.23
C9orf3-222ENST00000496567 NDUFC2O95298 119 aa13.63□□□□□ -0.23
C9orf3-222ENST00000496567 MRPL55Q7Z7F7 128 aaKnown RBP13.63□□□□□ -0.23
C9orf3-222ENST00000496567 CEND1Q8N111 149 aa13.63□□□□□ -0.23
C9orf3-222ENST00000496567 Q8NDZ9 215 aa13.63□□□□□ -0.23
C9orf3-222ENST00000496567 BVES-AS1Q5T3Y7 98 aa13.62□□□□□ -0.23
C9orf3-222ENST00000496567 SMR3BP02814 79 aaPredicted RBP13.62□□□□□ -0.23
C9orf3-222ENST00000496567 BATFQ16520 125 aa13.62□□□□□ -0.23
C9orf3-222ENST00000496567 MUSTN1Q8IVN3 82 aa13.62□□□□□ -0.23
C9orf3-222ENST00000496567 SNHG12Q9BXW3 62 aa13.62□□□□□ -0.23
C9orf3-222ENST00000496567 M0R143 59 aa13.61□□□□□ -0.23
C9orf3-222ENST00000496567 RYR1P21817 5038 aa13.6□□□□□ -0.23
C9orf3-222ENST00000496567 KIAA1109Q2LD37 5005 aa13.6□□□□□ -0.23
C9orf3-222ENST00000496567 M0R378 163 aa13.59□□□□□ -0.23
C9orf3-222ENST00000496567 FXYD2P54710 66 aa13.59□□□□□ -0.23
C9orf3-222ENST00000496567 UBE2BP63146 152 aa13.59□□□□□ -0.23
C9orf3-222ENST00000496567 PRR3P79522 188 aaKnown RBP13.58□□□□□ -0.23
C9orf3-222ENST00000496567 LINC00528Q8N1L1 170 aa13.58□□□□□ -0.23
C9orf3-222ENST00000496567 LINC00167Q96N53 147 aa13.58□□□□□ -0.23
C9orf3-222ENST00000496567 TRBV10-2A0A0K0K1G8 114 aa13.58□□□□□ -0.24
C9orf3-222ENST00000496567 NCR3O14931 201 aa13.58□□□□□ -0.24
C9orf3-222ENST00000496567 GAGE10A6NGK3 116 aa13.57□□□□□ -0.24
C9orf3-222ENST00000496567 HSPG2P98160 4391 aa13.55□□□□□ -0.24
C9orf3-222ENST00000496567 FAM229AH3BQW9 127 aa13.54□□□□□ -0.24
C9orf3-222ENST00000496567 RPL37AP8A6NKH3 93 aa13.53□□□□□ -0.24
C9orf3-222ENST00000496567 IGLV1-50A0A075B6I6 118 aa13.51□□□□□ -0.25
C9orf3-222ENST00000496567 A4D1N5 150 aa13.51□□□□□ -0.25
C9orf3-222ENST00000496567 S100A7L2Q5SY68 101 aa13.51□□□□□ -0.25
C9orf3-222ENST00000496567 Q8N1X5 172 aa13.51□□□□□ -0.25
C9orf3-222ENST00000496567 IGKV2-28A0A075B6P5 120 aa13.5□□□□□ -0.25
C9orf3-222ENST00000496567 IGKV2D-28P01615 120 aa13.5□□□□□ -0.25
C9orf3-222ENST00000496567 RPL37AP61513 92 aaKnown RBP13.5□□□□□ -0.25
C9orf3-222ENST00000496567 KRTAP11-1Q8IUC1 163 aa13.49□□□□□ -0.25
C9orf3-222ENST00000496567 NHP2Q9NX24 153 aaKnown RBP13.49□□□□□ -0.25
C9orf3-222ENST00000496567 PSORS1C2Q9UIG4 136 aa13.49□□□□□ -0.25
C9orf3-222ENST00000496567 TMEM238LA0A1B0GVL6 79 aa13.49□□□□□ -0.25
C9orf3-222ENST00000496567 A6NJY4 79 aa13.49□□□□□ -0.25
C9orf3-222ENST00000496567 PLA2G1BP04054 148 aaKnown RBP13.49□□□□□ -0.25
C9orf3-222ENST00000496567 TRBV10-3A0A0K0K1G6 114 aa13.48□□□□□ -0.25
C9orf3-222ENST00000496567 A6NDN8 102 aa13.48□□□□□ -0.25
C9orf3-222ENST00000496567 Q5VSD8 79 aa13.47□□□□□ -0.25
C9orf3-222ENST00000496567 OR13C6PQ8NH95 151 aa13.47□□□□□ -0.25
C9orf3-222ENST00000496567 K7ERJ3 54 aa13.46□□□□□ -0.25
C9orf3-222ENST00000496567 IGLV6-57P01721 117 aa13.46□□□□□ -0.25
C9orf3-222ENST00000496567 TMEM126AQ9H061 195 aa13.46□□□□□ -0.25
C9orf3-222ENST00000496567 LINC00337Q8N6G1 96 aa13.45□□□□□ -0.26
C9orf3-222ENST00000496567 CBY1Q9Y3M2 126 aa13.45□□□□□ -0.26
C9orf3-222ENST00000496567 TRAV13-2A0A0B4J235 113 aa13.45□□□□□ -0.26
C9orf3-222ENST00000496567 C1orf137Q5JT78 98 aa13.45□□□□□ -0.26
C9orf3-222ENST00000496567 COL5A1-AS1Q5SY13 56 aa13.45□□□□□ -0.26
C9orf3-222ENST00000496567 A0A1B0GWB2 263 aa13.44□□□□□ -0.26
C9orf3-222ENST00000496567 CFC1BP0CG36 223 aa13.44□□□□□ -0.26
C9orf3-222ENST00000496567 CFC1P0CG37 223 aa13.44□□□□□ -0.26
Retrieved 100 of 20,778 RNA–protein pairs in 57.7 ms